LOC122345662 (ralgps1,LOC107666038,LOC107557582,LOC107725136,LOC107654291)


Basic Information

Item Value
gene id LOC122345662
gene name ralgps1,LOC107666038,LOC107557582,LOC107725136,LOC107654291
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 31759936 ~ 31857602 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239997.1
CTGTCCGTTAGATCAAAGGACCCTACCTGACACTTCCTGCCCGTGAATGTTTCGCTTGTTTTGGCAGTGTGTGATATCTGTGTATCCCTGCCATGTTTGTGTACATCTCTCGCAAACGTCTTTACGTTCGTAAACGCGTAACATAGCTCTGACGCTCTGGAATAATAACCCGACGCGCTGTTTTGGATTATATGCGCGGTTGAGCCCGTTTAATGGATGACTGGAGGCAAAACGTGATTGTTTCTTCTCATTGATCCAGGATCATACGGTGCGGAGATATAAGGTATGGATGATTTGTCATATGTGGGGTCTGGCTGAGGGCCACTGTTGCCCGGGCGACTGCACCCCATTGGCTGATTTTCCAGCATGTACCGTAGAAACGGCCTATCGGATGGCACCAGCATTAGCTCCGCCTCCTCTGAGGGAAGCAACAGCTCCGTGTCTGTGGACGGGCCGAGCGCTGACTACGCCAAGAGCTACGATGCTGTCGTGTTTGATGTGCTCAAAGTGACGCCGGAGGAGTTCGCAAGCCAAATCACCCTGATGGACGCCCCTGTGTTTAAGGCCATACAGCCAGAGGAGCTTGCTAGCTGTGGCTGGAACAAAAAGGAGAAGCACATACTGGCTCCTAATGTGGTTGCTTTCACGCGGAGGTTCAATCAGGTGAGCTTCTGGTTGGTACGAGAAATCCTGACCGCTCAAACCCTGAAGATCCGAGCAGAGATCCTGAGCCACTTCATCAAGATTGCCAAGAAACTCCTAGAGCTGAATAACCTTCATTCTATGGTGTCGGTGGTGTCGGCGTTGCAAAGCGCTCCCATCTTTAGACTGAGCAAGACCTGGGCGCTGATCAGCCGGAAGGACAAGGCCACGTTTGAGAAGCTGGACTATCTGACCTCCAAAGAGGAGAACTATGCCAGGATGAGAGAGTACATCCGCTCCCTCAAGATGGTGCCCTGCATCCCTTACCTGGGGATCTACCTGCTTGACATGATTTACATCGACTCAGCCTATCCTGCGTCTGACAGCATCATTGAGACTGAGCAGAGAACCAATCAGATGAACAACATCCTGCGGGTGATCTCTGACCTCCAGATGTCCTGCACATACGATCACCTCGTGACCCTCCCGCATGTGCAGAAGTACTTGATGTCTGTCCGCTACATCGAGGAGCTTCAGAAGTTCGTGGAAGATGACAATTTCAAACTGTCTCTGAAAATTGAACCCGGGAACAGCTCGCCACGCATGGCCACATCCAAAGAAGATCTTGCAGGTCCGTCTGAGTTGTCTCTATCGGTCAGGTATAATCGACGGCCCACATGTCCGGACGCCACCGTGGGGGTTCATATCCCCACCCCGCCGCCCTCACGCCACCGGAAGAGCCACAGCCTCGAAACGCGTCACATGATGTGGCATTTCGGGGTGGTGGAGAGCAAAAGTGCGACGTTTCCCATCGAGAAACCACGTCACCTGCTGGACGACAGCTTCCTGGAGTCTCAGAGTCCAGCGAGAAACAACCCGCACAGCTCTTCTGTGTCCAACGGCGTCTCTATAGgcAGCAGTCAGAGCTCGTTCTGTGAGGATCTTTCTCCGGGGGTCGAGAGGGGCCGCATGTACGCCACTCTGGGCCCTAACTGGAGGGTCCCTCTCCGCAGCTCCCCCAGAGGCCGCAGCCATGCCCACAGTCCTTCGGTAGCAGAGTCCAGTCTGGCTCATGGAGAGTCCGGTGGAGTCGTGATGGAGGGGCCACTGAAGAGGAAGACCCTACTGAAGGAGGGAAGGAAACCCAAGctgGCCTCCTGGACGCGGTACTGGATCACACTGTGTGGTTCCACTCTCTTATTCTACGGATCCAAAGCTCTGCGAGCCGCAGAACGGAAACATTACAAGTCTTCACCTAAGAAGGTGTGTGTTCTGGGCTGGATGGCGGTGCTCGGACGATCCGCTCAACCCAACATCTTCCAGCTCAACGATCCTGACAAAGGGAATGTTTACAAGTTTCAGACGAGCGCACGCTTCACTGCGATCATGTGGCACAAACACCTGGAGGAGGCTTGTCGCAGAAGAAGACCGCAGGTATCACAAACATGAGCAAAACCTCCTTTTATTCCACTATAAATGTCACTGGACCAGTaccttttcctttttcattgATAGCAATCTGGGTAACACTTTgaggtgtcataatacagatGAATTACCTCATTTGGTACTTAGTagtgcatgaaataaaatcaaactaagTTATGTAAT

Function

symbol description
ralgps1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in cytoplasm and plasma membrane. Orthologous to human RALGPS1 (Ral GEF with PH domain and SH3 binding motif 1).

NR:

description
PREDICTED: ras-specific guanine nucleotide-releasing factor RalGPS1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239997.1 True 2253 mRNA 0.52 22 31759936 31857602

Neighbor

gene id symbol gene type direction distance location
zgc:153704 zgc:153704,LOC107591480,LOC107562205,LOC107725160,LOC107665866,LOC107654290 coding downstream 23985 31733458 ~ 31735951 (-)
srrt srrt,LOC107665251,LOC107591506,LOC107725089,LOC107734366 coding downstream 76356 31674315 ~ 31683580 (-)
LOC122345089 NA coding downstream 88328 31668017 ~ 31671608 (-)
si:ch211-283g2.2 NA coding downstream 92321 31661478 ~ 31667615 (-)
si:ch211-283g2.1 si:ch211-283g2.1,LOC107734371,LOC107591505,LOC107654320,LOC107562197,LOC107667012,LOC108437645 coding downstream 100274 31651505 ~ 31659662 (-)
zbtb43 zbtb43,LOC107715540,LOC107668077,LOC107725105,LOC107654302 coding upstream 2294 31859896 ~ 31864890 (-)
lmx1ba lmx1b,lmx1ba,LOC107591520,LOC107668223,LOC107725103,LOC107654328,LOC107557569,LOC105902565 coding upstream 38201 31895803 ~ 31934473 (-)
mvb12ba mvb12ba,mvb12b,LOC107591487,LOC107666228,LOC107654329,LOC107725155,LOC107557586 coding upstream 86253 31943855 ~ 31960848 (-)
pbx3a pbx3a,LOC107668307,LOC107591489,LOC107725095,LOC107654303,LOC107715538,LOC107550583 coding upstream 122285 31979887 ~ 32016468 (-)
ajm1 zmp:0000000794,cunh9orf172,LOC107725135,LOC107666534,LOC107557588,LOC107715543,LOC107654331 coding upstream 192050 32049652 ~ 32067214 (-)
G41037 NA non-coding downstream 27677 31712351 ~ 31732259 (-)
G41023 NA non-coding downstream 58118 31655583 ~ 31701818 (-)
G41018 LOC107734365 non-coding downstream 64148 31691866 ~ 31695788 (-)
G41019 prdx4,LOC107665442,LOC107591478,LOC107734341,LOC107654298 non-coding downstream 75100 31683968 ~ 31684836 (-)
G41034 NA non-coding downstream 111324 31646858 ~ 31648612 (-)
G41064 NA non-coding upstream 118334 31975936 ~ 31977051 (-)
G41065 NA non-coding upstream 120112 31977714 ~ 31978466 (-)
G41177 NA non-coding upstream 528525 32386127 ~ 32386472 (-)
G41198 NA non-coding upstream 581017 32438619 ~ 32439145 (-)
G41191 NA non-coding upstream 586680 32444282 ~ 32445281 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other downstream 37030 31721270 ~ 31722906 (-)
apooa apoo other downstream 48199 31702453 ~ 31711737 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other downstream 409487 31331349 ~ 31350449 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other downstream 933578 30817732 ~ 30826358 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other downstream 967217 30789633 ~ 30792719 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other upstream 256294 32113896 ~ 32174064 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other upstream 356429 32214031 ~ 32293782 (-)
LOC122346085 LOC107748069,LOC107679343,LOC107594586 other upstream 425935 32283537 ~ 32314631 (-)
LOC122345737 egflam,LOC107704151,LOC107667876,LOC107725173,LOC107725080,LOC107564362 other upstream 880815 32738417 ~ 32757869 (-)

Expression


Co-expression Network