serinc5 (serinc5,LOC107756307,LOC107699732,LOC107555497,LOC107703261)


Basic Information

Item Value
gene id serinc5
gene name serinc5,LOC107756307,LOC107699732,LOC107555497,LOC107703261
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19196018 ~ 19216739 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240053.1
CGTCACAGCCTATTGTTAGCGGGGGCGCGCGGCGCGTGCAGGGAGAATCACTGGAGTAACGAACGCGCGAGCCCACGGTCGCGTTATCAGAACCTCACGAGCTCAACGGCTGAACCGGATCGGTGTGACTAAGGAGGATTTGCTTCGCTGCCATCATGTGTGCACCGTGTTGTTTGTCTCAGCTGGCCTGCTGCTGTGGATCGGCGGCCTGCTCCCTGTGCTGCGGCTGCTGTCCCAAGATCAAACAGTCCACCTCCACGCGCTTCATGTACGCCCTCTTCTTCATGTTGTTCACGGTGACCTGTGTCATCATGATGTCCCCTACTGTGGAGGCGGCAATGAGAGAACATATTCCTTTCTACACTGAAATGTGTAATAAGCTGAATGCGGGGGAGAACTGCAGTACTCTCGTGGGCTATTCGGCCGTGTATAAAGTCTGTTTCGGCATGGCCTGCTTTTTCTTCTTATTCTCTGTGTTCACTATTCGTGTGCGAACCAGCACAGGATGCCGGGCAGCTGTTCACAACGGGTTTTGGTTCTTTAAGTTTGTGGCTTTGCTGGCCTGCTGCGCAGGCGGATTTTTTCTCCCAAATCAAGAAAAGTTTCTAGAAGtcTGGCGTTATGTGGGGGCTGCTGGAGGTTTTCttttcatcatcatccagtTGATGCTTCTCGTTCAGTTTGCCCACAGATGGAATCAAAACTGGAGCTCAGGAGTCAAGTATAATAAAATCTGGTATGCAGCGCTGGCTCTGGTCACTCTGGTGCTGTTCTCTGTGGCAGTGGGAGCCTTGGTGTTTATGATCATGTTCTACACGGACCCAGAGGCCTGCTTCTTCAACAAGCTCTTCCTGGGTGTCAACGGCGGCCTGTGCTTCATCGTGTCTCTGCTGGCTATCTCGCCCTGCATTCAGACCTTCCAGCCCACCTCAGGTCTGCTTCAGTCCGCGGTCATCTCCGTCTACGTCATGTACCTCACCTTCTCGGCACTCGCCAGCAAGCCCGTTGAAATGGTGGAGCGAAACGGGAAAAATGTCACCGTCTGCGTCTTTCCTTACAAATCAGGACTGCAGAGCGACAAGAACATAGTGACGGGCGTTGGAACGGTCATACTGTTTGGCTGTATACTCTATTCTTGTTTGATCTCTACCACCAAGAGGAGCTCAACGGCTTTGCAGGTGTACAGGAACGATATGCCTGAAAACGAGAGAGCACGCTGCTGCTTCTGCTGTGTAGACGATACGGaGGACTATGATGATGAGAAGATTGCTGGAGGGCAGAATGTGAAATATGATGAGAGAGACGGCACAATCTACAGCTACTGCtatttccattttgttttctttctcggCTCTCTCTACGTCATGATGACTGTAACAAACTGGTTTAATTATGAGAACGCAAAGATCGAGAGGCTGCTGGAGGGGAGCTGGTCAGTGTTCTGGATCAAGATGGCATCCTGCTGGGTCTGTTTATTCCTGTACATGTGGACCCTGGTGGTCCCTATGCTCTTCCCAAAGAGATTCCAAGCCTAGAAACCCTTCACACAGGATCCAGTATCACCACTGTCCACTTCAAActactgcgtgtgtgtgtgtgtgtgtgattgtgtgaaagagtgcttttgtttgttttaatagttttagtatAGTAATGGCTTTTGATTTCTCAGAAGCCGATTATGTCTTTAAATAAGTTTTCATGGAAATCTGTTAGAGAAATCACGCTACGGCTACTCCCATGCTGATGTAGGGCTCTTGTTTTCCTCATAACATGAAGGTATAAAGATGAAGCATTGCTCAGGCTCACAAATCACCTGTAAGTGTCTTGCTTGTtacgcttttattttatttggtagCTGAAGAATTCTATGCAACTCAACAAAccatctgtgattttttttttttttttttttttcattcgttCGTTTCTTCTCGAAAGGTCTTCAAGCGTGTTTTGTAGTAGTATTTCACTTTAAGGGTGTTTCACTAAGGCAACAAGACTTCCTATTTGagtaaatgtacatatttatttaattgatctcttttttctttagttaGGAGAGCGCTGCCTTGCAAAACCACAACACTACACCACCAGTTGCACTCATGGAAACATGATCAAAACCAGCTAAGAAACGACTGTGCAAAATTATCCCTTGTACATATATGTGAATAAATGTACTCACATGAGATGTCACGTTACTGCATTTATTGAAGCACCCTAATAATTCCTTATGAAACAACACCAAAACAATATTTCCAAATATGTCCGCAACATTCCTTCGCGAGTTTCCTGTCTTTCGGCTCCATCAAAAAATCTCAGGTAGTGATTAATTCCACGTGCTGTTTCCTGTGAATCACCGTTTTAAGGAAAGCATGCGACTGCCATTcccagtaaatgtttttatgatgatTTGGACCGGACGGGCAAAGCCAAGGCCACACCGTTATGCCCCAAAACCCCAAACTGCCACACAAATTGTTACATGGCCAACAGCAACACTGAAGCTAtagatttttcttatttttttcgaTTTTCGTTACAATTTAAATGGTGCTTTAGAACATGGATGTCctataatattttattccaGCTCATGCACTAGACTTGCAAGCATGTCATTTGTCAAAAAATGAGTTTGTACGATCTTTTATACTTAAAACGCATTGTTACAGCTATTCTATTTAATCTTGAAGAGGTTTTTGTTGCTATaagtgcatgtttgtgtttcttGTTTGTGGTATTCAGTTTAAGTTTACAGGAGATGCACGTATTAGACTTAATGCAGCGCTTCTGATGCTccctggtaaaaaaaaaaaataataataataaagtgttgTCGATGAAGGAAATATCTAGAACTGgaattatttgacattttatggtTATTCCTGTGTAGCAGTTGTAGCTGTCCCACTTGCTTTGACAAACCAAAATCTCTAGATTAGAGCCGGCATGTGtttatattcctgtgatgatgTTTTTGGCCTTTATATAAATCAGAATTAGCAAATAGGTAACGATTGCCTTAAACTCTACCTGCTACAACTGCATTAAGCTGTAAGCATACTGTTCATGAAAAATCGAATGCTTAgtatttggtttaaaatgtttgtctggattaaacattgtttttctttatttacaaatatgctAAACATAAGTGACATTTGATTGCAATATGTGCTTTATGTAAATAGCCCATTGTAAAGATGACCACTAGATGTACtcataatattgcaaaaaatgtaatctcGCGCTTTGTGCTGTTTTCACTAATTTTGCATGAAGACATTATAATCCAAAAATATGTACAGCAAGTTTACAAACAACTCTTGTCCTCATTTATATGcatagatttgttttttctttctttattgttatttactttttcctATCATTTCAGTACGTTCCATGAAAGGAAGTCATACGTGTTTAACTGCTGCAGGATCAACAttctttttagtgtttttattgatatttccagttctttcaataaaaaaagcaaatgaataaaa

Function

symbol description
serinc5 Predicted to be involved in defense response to virus; detection of virus; and innate immune response. Predicted to act upstream of or within several processes, including myelination; phospholipid metabolic process; and sphingolipid metabolic process. Predicted to be located in plasma membrane. Predicted to be active in membrane. Is expressed in several structures, including central nervous system; hindbrain neural plate; midbrain hindbrain boundary neural keel; optic primordium; and optic vesicle. Orthologous to human SERINC5 (serine incorporator 5).

NR:

description
PREDICTED: serine incorporator 5-like

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24177 SERINC4_5; serine incorporator 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240053.1 True 3521 mRNA 0.42 12 19196018 19216739

Neighbor

gene id symbol gene type direction distance location
homer1b homer1b,LOC107720277,LOC107699726,LOC107555494,LOC107703256,LOC108423652,LOC108255354 coding downstream 39500 19134372 ~ 19156518 (-)
lhfpl2b lhfpl2b,LOC107720278,LOC107587511,LOC107699725,LOC107756302,LOC107555493,LOC107703255 coding downstream 64686 19124324 ~ 19131332 (-)
otpb otpb,otp,LOC107720233,LOC107587559,LOC107555478,LOC108423578 coding downstream 112940 19079743 ~ 19083078 (-)
entr1 LOC107720284,LOC107699695,LOC107587560,LOC107555476,LOC107703226 coding downstream 243283 18949562 ~ 18952735 (-)
snapc4 LOC107699680,LOC107720210 coding downstream 246659 18938322 ~ 18949359 (-)
cdk7 cdk7,LOC107756278,LOC107720222,LOC107703229,LOC107699696 coding upstream 996 19217735 ~ 19221166 (-)
LOC122345207 LOC107720271,LOC107699734,LOC107587503,LOC107756310,LOC107703263 coding upstream 80560 19297299 ~ 19313145 (-)
erap2 erap2,LOC107699735,LOC107756311,LOC107703265,LOC107720206 coding upstream 97409 19314148 ~ 19323539 (-)
rgmb rgmb,LOC107555502,LOC107756312,LOC107720270,LOC107699736,LOC107703266,LOC107587502 coding upstream 111413 19328152 ~ 19340602 (-)
si:ch211-117c19.1 LOC107703232,LOC107555504,LOC107756280,LOC108423640,LOC107577894 coding upstream 203143 19419882 ~ 19424139 (-)
G37776 NA non-coding downstream 62874 19132813 ~ 19133144 (-)
G37774 NA non-coding downstream 72710 19123025 ~ 19123308 (-)
G37757 ckmt2b,ckmt2,LOC107720280,LOC107756255 non-coding downstream 120244 19068914 ~ 19075774 (-)
G37637 NA non-coding downstream 382247 18813564 ~ 18813771 (-)
G37571 NA non-coding downstream 804370 18373317 ~ 18391648 (-)
G37792 NA non-coding upstream 7613 19224352 ~ 19225429 (-)
G37799 NA non-coding upstream 65126 19281865 ~ 19282092 (-)
G37800 NA non-coding upstream 65638 19282377 ~ 19282691 (-)
G37801 NA non-coding upstream 69888 19286627 ~ 19286848 (-)
G37877 NA non-coding upstream 289182 19505921 ~ 19510282 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other downstream 12040 19175463 ~ 19183978 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 1845638 17346469 ~ 17350380 (-)
LOC122345693 NA other downstream 2336087 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 2482851 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 2562897 16596855 ~ 16633121 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 648280 19865019 ~ 19935576 (-)
G38058 NA other upstream 834920 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 908850 20125589 ~ 20127390 (-)
LOC122345844 ppil3 other upstream 1177992 20394731 ~ 20396734 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other upstream 1689304 20906043 ~ 20936097 (-)

Expression


Co-expression Network