igbp1 (LOC107746347,LOC107700909,LOC107548490,LOC107655913,LOC107757539)


Basic Information

Item Value
gene id igbp1
gene name LOC107746347,LOC107700909,LOC107548490,LOC107655913,LOC107757539
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13383212 ~ 13387955 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240074.1
ACCCGGAAAAAACGGAAGCCGAGCTGGATAAATACGCTTTGAGAAATGGCGGCCGCTGAAGACGCGAACAGTACACAGAACCCCAGTGGTTCTGAGGTTCCAAAACTATCGGATTTGCTGGACCGGGGCTGGAAGCTGTTTGAAGAGGTGGACACCACAAACGAGCCGAGCAACTCCAATGCGGTGCAAGTGAAAGTGAAGCGCGCTATCGTGCAGCTGGAGGAGGCGACGAGGATGGTCAATCAGCTGAACCTCTTCAGtCGTAATGAGGCGCTGGAGGAAATCTCCACGGCTGACCTGAAGTATCTGTTGTTGCCGGCTCTTCTGGGAGCGCTTACCATGAAACAGGTGAACCTCAGCAAGCGCCTGGAGCACGTGCAGGCGGCCCGCGTCTACTTCATGGACTTCCTCCAGAGGTGCAAGGACTATGATGTGTGTAGTTTCCAGCTGCCCAGAGCCAGCGAGAACACCGCAGACACCCCTACTGAGGAGCAGACCAGTCCATCGGTCCCAATGCCTGTGTCACAGCCAGACCTCATCGCAATGGCAACACAAAGACAAGCCAAAATAGAGAGTTTTAGGCAGCGCAAGGAGACCGAAGCCAAGCTGAGCGAGATCAGGGGGCTGGTTGAAGCTGGTTCAGCCGACGAAGAGGTGGTGAGAGATTTTTACCTGCTACATGTACGCAGGTGGGTCACACTGGCACTTGAGGAGATCGACTCCATCAACCAGGAGATGGAGATTCTGAAACGGATGGAGCTTTTCAAGCAGAGCGCCCCCCAGCCATCTCCACCTAGAAGACCACCCATGAAGCCTTTTATCCTGACTAAGGACGCTGTGCAGGCAAAAGTGTTTGGTGCAGGGTATCCCAGTCTTCCCACCATGACCGTGGATGACTGGTACGAGCAGCACAGACGGAAAGGATGTTTACCTGACCAGGGAATACCACGAAGTGCAGCAGATGGTGATGTAGAGGAAGATGAgagagcagaaagagagaggaaggaggAGAACGATGATGAAGAGGCACTGCAGAAGGCACGTGACTGGGACGACTGGAAGGACACGCACCGGAGAGGCTATGGCAACCGCAAAAACATGGGCTGATCTGCTTTCACACACTCGCAAACACATGTATCCCTCCAGTTCCCTCAAATAAACCTCCCAATGCTGCCAATATGTGACATGGACACAACAGAGAGTGGCACTGTAGTTGTTAGTTGAGAtggtaaaatttttttttctaaaccgTTTGCGTATTTGACATTCTTTTATACGTCTCTATATAAATCTTAAATCTTGTTGAGCTTAAATGAGACCTTAATCCCCTGAGCATCTGTGGAGATAGATGTTTGGGTGTTACCCTTCCCCACATGATTAAAAGTTTGCCTTTTCATGGATGTGCAGCATTTCTACAGAGGTGTTCCCTGTACTGTCAACTTTTAGAGTCAAAATCAGTTGGACTCAGAAGGACATTGTCACCCACATAATTACACCTAATGTGATGTTTGATTTGAAGCCAGTTAAGACTGCATGTTAACTATTAGCCGATACTGCTAGGCTTCGTTGTCTGTTTCAGATCAGATGCTTCGGTGAAGAAGGTTCTGCGAGAGCATTTAGAACCAATATCAGCACTTGCATGCATCTGACACTGTGGTTAAGAAATGCTGAAGAAACTGTGTGGGATGTTTGTTGAAACATACTGTCTAGACTGCCTTTTtattctgaaatgtatttattatctgccagctttgcttttcttttggAAAACTCTTTTGTGAGGTCAACTTTCAATTCTTCAGTAAATATAAAGAGAAATCACCTA
>XM_043240075.1
AAAGACCCGGAAAAAACGGAAGCCGAGCTGGATAAATACGCTTTGAGAAATGGCGGCCGCTGAAGACGCGAACAGTACACAGAACCCCAGTGGTTCTGAGGTTCCAAAACTATCGGATTTGCTGGACCGGGGCTGGAAGCTGTTTGAAGAGGTGGACACCACAAACGAGCCGAGCAACTCCAATGCGGTGCAAGTGAAAGTGAAGCGCGCTATCGTGCAGCTGGAGGAGGCGACGAGGATGGTCAATCAGCTGAACCTCTTCAGtCGTAATGAGGCGCTGGAGGAAATCTCCACGGCTGACCTGAAGTATCTGTTGTTGCCGGCTCTTCTGGGAGCGCTTACCATGAAACAGGTGAACCTCAGCAAGCGCCTGGAGCACGTGCAGGCGGCCCGCGTCTACTTCATGGACTTCCTCCAGAGGTGCAAGGACTATGATGTGTGTAGTTTCCAGCTGCCCAGAGCCAGCGAGAACACCGCAGACACCCCTACTGAGGAGCAGACCAGTCCATCGGTCCCAATGCCTGTGTCACAGCCAGACCTCATCGCAATGGCAACACAAAGACAAGCCAAAATAGAGAGTTTTAGGCAGCGCAAGGAGACCGAAGCCAAGCTGAGCGAGATCAGGGGGCTGGTTGAAGCTGGTTCAGCCGACGAAGAGGTGGTGAGAGATTTTTACCTGCTACATGTACGCAGGTGGGTCACACTGGCACTTGAGGAGATCGACTCCATCAACCAGGAGATGGAGATTCTGAAACGGATGGAGCTTTTCAAGCAGAGCGCCCCCCAGCCATCTCCACCTAGAAGACCACCCATGAAGCCTTTTATCCTGACTAAGGACGCTGTGCAGGCAAAAGTGTTTGGTGCAGGGTATCCCAGTCTTCCCACCATGACCGTGGATGACTGGTACGAGCAGCACAGACGGAAAGGATGTTTACCTGACCAGGGAATACCACGAAGTGCAGATGGTGATGTAGAGGAAGATGAgagagcagaaagagagaggaaggaggAGAACGATGATGAAGAGGCACTGCAGAAGGCACGTGACTGGGACGACTGGAAGGACACGCACCGGAGAGGCTATGGCAACCGCAAAAACATGGGCTGATCTGCTTTCACACACTCGCAAACACATGTATCCCTCCAGTTCCCTCAAATAAACCTCCCAATGCTGCCAATATGTGACATGGACACAACAGAGAGTGGCACTGTAGTTGTTAGTTGAGAtggtaaaatttttttttctaaaccgTTTGCGTATTTGACATTCTTTTATACGTCTCTATATAAATCTTAAATCTTGTTGAGCTTAAATGAGACCTTAATCCCCTGAGCATCTGTGGAGATAGATGTTTGGGTGTTACCCTTCCCCACATGATTAAAAGTTTGCCTTTTCATGGATGTGCAGCATTTCTACAGAGGTGTTCCCTGTACTGTCAACTTTTAGAGTCAAAATCAGTTGGACTCAGAAGGACATTGTCACCCACATAATTACACCTAATGTGATGTTTGATTTGAAGCCAGTTAAGACTGCATGTTAACTATTAGCCGATACTGCTAGGCTTCGTTGTCTGTTTCAGATCAGATGCTTCGGTGAAGAAGGTTCTGCGAGAGCATTTAGAACCAATATCAGCACTTGCATGCATCTGACACTGTGGTTAAGAAATGCTGAAGAAACTGTGTGGGATGTTTGTTGAAACATACTGTCTAGACTGCCTTTTtattctgaaatgtatttattatctgccagctttgcttttcttttggAAAACTCTTTTGTGAGGTCAACTTTCAATTCTTCAGTAAATATAAAGAGAAATCACCTA

Function

NR:

description
immunoglobulin-binding protein 1-like

GO:

id name namespace
GO:0009966 regulation of signal transduction biological_process

KEGG:

id description
K17606 IGBP1, TAP42; immunoglobulin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240074.1 False 1825 mRNA 0.48 6 13383216 13387955
XM_043240075.1 True 1826 mRNA 0.48 6 13383212 13387955

Neighbor

gene id symbol gene type direction distance location
wnt11f2 wnt11,LOC107746349,LOC107548453,LOC107655896,LOC107596154,LOC107757514,LOC107700898 coding upstream 3444 13376537 ~ 13379768 (+)
eda eda coding upstream 10743 13342146 ~ 13372469 (+)
nalf2 fam155b,LOC107548493,LOC107746345,LOC107655916,LOC107596158,LOC107757536 coding upstream 45074 13334755 ~ 13338138 (+)
steep1 zgc:103697,cunhxorf56,LOC107548454,LOC107655899,LOC101478835 coding upstream 225975 13151621 ~ 13157237 (+)
stard8 LOC107757534,LOC107596160,LOC107548495,LOC107746344,LOC107700913 coding upstream 275640 13066436 ~ 13107572 (+)
micu2 LOC107700905,LOC107746354,LOC107596152,LOC107655910,LOC107757544,LOC107548488 coding downstream 24665 13412620 ~ 13418968 (+)
nova1 nova1,LOC107757545,LOC107655909,LOC107700904,LOC107746355,LOC107548487,LOC103377877 coding downstream 31401 13419356 ~ 13437936 (+)
alkbh6 LOC107746424,LOC107548452,LOC107700897,LOC107655907,LOC107757515,LOC107596150 coding downstream 53493 13441448 ~ 13447200 (+)
capns1a capns1a,LOC107655908,LOC107700232,LOC107548486,LOC107746417 coding downstream 59400 13447355 ~ 13454224 (+)
zgc:153990 LOC107548484,LOC107746356,LOC107700225,LOC107655905,LOC107757517,LOC107596149 coding downstream 66551 13454506 ~ 13460110 (+)
G36109 NA non-coding upstream 58829 13324033 ~ 13324383 (+)
LOC122345423 NA non-coding upstream 70560 13299755 ~ 13312652 (+)
G36062 NA non-coding upstream 274359 13108632 ~ 13108853 (+)
G35905 NA non-coding upstream 497278 12885331 ~ 12885934 (+)
G35904 NA non-coding upstream 497928 12885005 ~ 12885284 (+)
G36140 NA non-coding downstream 132018 13519973 ~ 13521608 (+)
G36141 NA non-coding downstream 179022 13566977 ~ 13580798 (+)
G36168 NA non-coding downstream 259971 13647926 ~ 13648538 (+)
G36191 NA non-coding downstream 332830 13720785 ~ 13721566 (+)
G36198 NA non-coding downstream 344014 13731969 ~ 13732456 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 575861 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 677967 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 854422 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1127540 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1440102 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 596142 13984097 ~ 13985706 (+)
G36495 NA other downstream 902465 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 912088 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 945068 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 959607 14347562 ~ 14349991 (+)

Expression


Co-expression Network