CI01000004_16649360_16654303


Basic Information

Item Value
gene id CI01000004_16649360_16654303
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16649171 ~ 16654353 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_16649360_16654303.mRNA
GTACAAAAAAAGAGAAAAGGAGAAAACAATCCACAGCAGAAGTCCCACAACATGTGTAAATGCTCTTTGAGATAATCCAAAGGCCCTAATTGGCTTTAGGATTACAACTTGCCGTGTGATTTGAGACACCGCAATGCACCTTGATGTTGAAACATCAGTGCAGAGGACAAACGCAAAAAAGCAGCAAAGATGTCTCCTGTGGACATGAATGGATACTGGAAAATGACAAGTAATGAAAACTTTGATGAATACATGGAAGCACTCGATGTGAATCTTGTCATCAGAAAAATTGCCAGCTATCTCATCTTTGATAAGGAGATTGTTCAGAATGGTGATCATTTTAATATCAAGACTCTCACCACCTTTAGGAACTACCATATGGAGTTTGATGTTGGAAAGGAGTTTGAGGAGGATTTGGTTGGTGTAGATGACAGGAAATGTATGACCACAGTAAACTGGGAGGGAGACAAACTGGTGTGTGTGCAGAAAGGAGAAAAGGAGGGAAGGGGCTGGACACAATGGGTCAAAGGGGATGAGTTACATGTGTGTGGTGTCACACTTTCAGCACACACGATCTACAGGAGATGCAGCAGTGCAGGTTTACAGACCCTCATCATATCATCATCATCCTCTTCCTGCTTCTACAAACAAGAAAGGAGCTCGATTTGCTGCGGGGTCAAGACCTGTCTTCTCTCCTCCAGCCAGAAAGACCCTCAGATGTTAAAGGCGGTATTTTTAGACAGCAGTAAAGCTCTCAGTTATGAAGCTAGTCCAAACATACCAAACCCACACACATAAGAATTTAACAGGTGTTCGTAAATATCCACTAAAGTAATTGCTTATTTGGA

Function

GO:

id name namespace
GO:0006776 vitamin A metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_16649360_16654303.mRNA True 848 mRNA 0.42 4 16649171 16654353

Neighbor

gene id symbol gene type direction distance location
CI01000004_16579927_16586961 NA coding upstream 61974 16579927 ~ 16587197 (+)
CI01000004_16567132_16570668 NA coding upstream 77803 16567132 ~ 16571368 (+)
CI01000004_16490931_16555397 CARMIL3, LRRC16B coding upstream 93178 16490931 ~ 16555993 (+)
CI01000004_16467711_16471121 NA coding upstream 177664 16467711 ~ 16471507 (+)
CI01000004_16407140_16438873 NA coding upstream 209921 16406985 ~ 16439250 (+)
CI01000004_16695941_16729500 NA coding downstream 41280 16695633 ~ 16729719 (+)
CI01000004_16812706_16814956 NA coding downstream 158353 16812706 ~ 16815068 (+)
CI01000004_16869205_16944944 CLSTN2 coding downstream 214852 16869205 ~ 16944944 (+)
CI01000004_17062704_17110319 CRHR2.S, CRHR2 coding downstream 408351 17062704 ~ 17110319 (+)
CI01000004_17214619_17236647 PTH1R, PTH1RA coding downstream 560266 17214619 ~ 17236674 (+)
G34277 NA non-coding upstream 2949 16641342 ~ 16646222 (+)
G34330 NA non-coding upstream 176938 16472007 ~ 16472233 (+)
G34323 NA non-coding upstream 193545 16449680 ~ 16455626 (+)
G34322 NA non-coding upstream 200081 16448846 ~ 16449090 (+)
G34297 NA non-coding upstream 339865 16301233 ~ 16309306 (+)
G34357 NA non-coding downstream 11227 16665580 ~ 16672434 (+)
G34359 NA non-coding downstream 18191 16672544 ~ 16672767 (+)
G34361 NA non-coding downstream 19568 16673921 ~ 16674301 (+)
G34362 NA non-coding downstream 20152 16674505 ~ 16674814 (+)
G34391 NA non-coding downstream 274121 16928474 ~ 16956174 (+)
G33815 NA other upstream 582707 16063415 ~ 16066464 (+)
G34220 NA other upstream 709221 15939357 ~ 15939950 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 1557202 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 2612271 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3993460 12646838 ~ 12652570 (+)
G34400 NA other downstream 322975 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015761 rbp1.2 coding NC_007113.7 CM002886.2 39021282 ~ 39028052 (+)