LOC122345702 (figla)


Basic Information

Item Value
gene id LOC122345702
gene name figla
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2607214 ~ 2609585 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240111.1
TGCGGTGCGCTGAGCGTGTCGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTCGTGTAAACTGAGATGAGCAGCAGGAGGTTCAGGGCTGTGGTGGGGCTCATGAAGGTCCCGGAGCGAGAGCTGATGGGTGATGTTTTATTACGCGACAGCGCTGAGCCCTCGCTTCCGGTTCACGTCAATATCGGTAAATTCGTCCGCTTGGATGACGGCCGGTATATCGACACCGAGGACCGGGATAAAGCCGTGAGGAGGAGACAGCTCGCCAACGCCAAGGAGAGACTCCGGGTCCGGAGTCTGAACAGCATGTTCTCGTACCTGCGGCGCATCGTTCCGGTCATGCCTCGGGACCGAAAGCCCAGTAAAGTGGACATGCTGAAGGCCGCCACCGAGTACATCCGGCTCCTGTCGGCCGTCCTCCATCACTCCTCAGCCGCCAGTAATGGAGATGCAAATGTTTTGCTGGAGACCGGGATCAACTGCTCCAGCTTGGAGACGGACTGCTCTGATCTCTGGAGCATGGAGGATGTCCTGGAGTCTCCGTCCAGCCCCTTTCTGTCGGAGAGCGTGCCGAACGCAGCGGACGACGAGCTGGATCTCGGGAACGTGACGGTTCAGTGCGTGGTCCCCATGTACATCGTCCAGGTGGCGTCCGAGCAGACCGTGATCACCAGCACGCTCCCGTCTTAACTGGGGTTCAATGTTATATCACTGATTCATGCCTCTGATATTAGTAGAGTTACTAAAACATGTGAAGGAAGGACGATCGGTTTGATCCTGACGTGTCGTGggaatttattttgtatttattttcaagagCCGACTCATTTACATATAAGAGAGAGaatgtatatgaatatgtggaattaacacatttatgattttcaaatgtgaataaattgtaaataggta

Function

symbol description
figla Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within female gonad development. Is expressed in gonad; ovary; and testis. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 6. Orthologous to human FIGLA (folliculogenesis specific bHLH transcription factor).

NR:

description
PREDICTED: factor in the germline alpha

GO:

id name namespace
GO:0008585 female gonad development biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09066 FIGLA; factor in the germline alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240111.1 True 931 mRNA 0.53 4 2607214 2609585

Neighbor

gene id symbol gene type direction distance location
mxd1 mxd1,LOC107670395,LOC107708253 coding downstream 27411 2555476 ~ 2579803 (-)
zgc:65851 zgc:65851,LOC107670379,LOC107708255,LOC107668750,LOC107599600,LOC107755851,LOC107573085 coding downstream 63640 2536025 ~ 2543574 (-)
purba LOC107737074,LOC107755849,LOC107668742,LOC107670383,LOC107599601,LOC108431741,LOC107580671 coding downstream 79877 2524559 ~ 2527337 (-)
LOC122346100 LOC107757959,LOC107587426,LOC107709681,LOC107681216,LOC107560221,LOC107560220 coding downstream 189161 2385151 ~ 2418053 (-)
LOC122345768 LOC107562125,LOC107690349,LOC107554462,LOC107715242 coding downstream 508033 2090152 ~ 2099181 (-)
tet3 LOC107654213,LOC107708251,LOC107557386,LOC107697244,LOC107551814,LOC107755856 coding upstream 214586 2824171 ~ 2866043 (-)
ap3m2 ap3m2,LOC107755857,LOC107551816 coding upstream 256580 2866165 ~ 2874893 (-)
kat6a kat6a,LOC107708249,LOC107697242,LOC107755858,LOC107699914,LOC107551817 coding upstream 266724 2876309 ~ 2910382 (-)
LOC122345463 sema4c,LOC107699920,LOC107697240 coding upstream 413264 3022849 ~ 3089522 (-)
gnb1l gnb1l,LOC107708243,LOC107755863,LOC107551810 coding upstream 733974 3343559 ~ 3376526 (-)
LOC122346060 cacna1ba,LOC107560222,LOC107587427,LOC107709695 non-coding downstream 171514 2433286 ~ 2435700 (-)
G32740 cacna1ba,LOC107709695,LOC107757972,LOC107587427,LOC107681248,LOC107560222,LOC107690670 non-coding downstream 182402 2422985 ~ 2424812 (-)
LOC122344845 LOC107709689,LOC107560224,LOC107681222 non-coding downstream 222513 2383907 ~ 2384701 (-)
LOC122344860 LOC107560224,LOC107690695,LOC107757958,LOC107681222,LOC107709689,LOC107587469 non-coding downstream 227819 2377967 ~ 2379395 (-)
G32727 LOC107681241 non-coding downstream 231551 2374002 ~ 2375663 (-)
G32870 NA non-coding upstream 42859 2652444 ~ 2728807 (-)
G32881 NA non-coding upstream 140374 2749959 ~ 2797599 (-)
G32882 NA non-coding upstream 155698 2765283 ~ 2766771 (-)
G32883 NA non-coding upstream 158194 2767779 ~ 2774190 (-)
G32884 NA non-coding upstream 159616 2769201 ~ 2770371 (-)
add2 add2,LOC107668755 other downstream 1297 2586587 ~ 2605917 (-)
snrnp27 snrnp27 other downstream 21762 2580548 ~ 2585452 (-)
G32857 NA other downstream 53068 2496504 ~ 2554146 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other downstream 584292 2020096 ~ 2022922 (-)
G32676 NA other downstream 639466 1966637 ~ 1967748 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other upstream 326158 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other upstream 341877 2951462 ~ 2960177 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other upstream 1135090 3744675 ~ 3752764 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other upstream 1269065 3878650 ~ 3898578 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other upstream 1535271 4144856 ~ 4193081 (-)

Expression


Co-expression Network