opn4xb (opn4xb,LOC107704143,LOC107725176,LOC107667875,LOC107564366)


Basic Information

Item Value
gene id opn4xb
gene name opn4xb,LOC107704143,LOC107725176,LOC107667875,LOC107564366
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 32724898 ~ 32733732 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240117.1
GGCTGGGTCATGTGATATGACAAGTAGGTCGCAGTGTGTCCGTCTGTTGACGTTACTGATAGTGTTTAACTAAAGTCTCTCTTACTCTGAGCAGAGACAGACTGAGAGGAAACGACAGAGACCATGACTGAGTCTGCACTCAAGAGCTACTCTTCAGTGTTTGTTGCTGTATCTTCTGTTTGGTGATGGAGCCTCAACGGCAGATCTACAAAAGACTGGACATCCCAGATCATGTGCATTACATCATCGCCTTCCTCGTCCTCGTCATCGGCACTTTAGGAGTCACGGGCAACGCTTTGGTCATGTTTGCCTTCTACAGCAATAAAAAGTTGCGGAGCCTGCCAAATTATTTCATAGTGAACCTGGCGGTCAGTGATTTCCTCATGGCCATCACACAGTCTCCGATGTTCTTCATCAACTGCCTGTTTAAGGAGTGGATGTTTGGGGAGCTGGGATGTAAAATATATGCGTTCTGCGGTGCTCTGTTTGGCATCACCTCGATGATAAACCTGCTGGCCATCTCTATCGATCGGTACCTGGTCATCACCAAACCGCTGCAGACCATCCAGTCGAACTCCAAGCGCAGGACCTCTCTGGCCATCCTGTGCATCTGGATCTACTCGCTGGCCTGGAGTCTGgcacctctgattggctggaGTTCCTACATCCCTGAAGGTCTGATGACGTCCTGCACGTGGGACTACGTCTCTCCGTCTCCAACCAACAAGAGTTACACCATGATGCTGTGCTGTTTCGTCTTCTTCATCCCTCTGGCCATCATCCTCTACTGTTACCTCTTCATGTTCCTCTCCGTACGAAAGGCCAGCAGagatCTAGAGCGGCTGAGCTCTCAGAAGTCCAGCTTTGTGAAGCAGCAGTCCATGAGGAGCGAATGGAAGCTGGCCAAAATAGCGGCCGTGGTCATAGTGGTGTATGTGCTGTCCTGGTCTCCCTACGCGTGCGTCACTCTCATCGCCTGGGCAGGGCATGCAAACATCCTCACACCCTACTCTAAAACTCTGCCGGCGGTCATCGCCAAATCATCTGCCATCTACAACCCTTTCATATATGCCATAGTTCACACCAAATACagAGCCACATTAGCTGAGAAGGTCCCAGGTTTGTCCTGCCTGTCCCGTGTTCAGAAAGACTGTCTCACCTCCTCCACCAACAGTGACATCTCGGTCCAGGACACCAGCGTCAGCAGACAGTCATCAGTCTCCAAGAACAAGCTCCACGCAACCACCGCCAACCACTCCAGTGCTATGGTAATGGGAGAAGTGGAGCTGGACTTAATGGAGAATAGGTCCAAAGTATCAAAGGTGTCATTTAGAGGCTCGTCTAGACAGCGCATCCTCAAATGCTCCTCACTGCTGATAGAGAAGCCCCCGGTACAGATGAAAGAGTCGTTCAGTCTATGCGAGCGAGATCTCGTCTCCGGTTCCCTCGCCACGACAAAGGCACCGACAGTTGTTTCCACTAAGAAGAGCCGGAGTGCCGATACGACCTCTGACCTTTCATTTCACCCTAAGAACTGCTCTGTGACCCGCAGCTCCTCTGACACTCCCACGATCATCATCAGTCCAGCTTCAGAGAGCAACCTCAGAGAAGATACAGTAGGACCTCACTGTCAGAATGCTGCTGGACACTAAAGAGAGGTTTCTCACATGAAGCGACCAGCGCTGATCTGACACTGTTAAATCAACTCTGATTCTAGATGTGCacttcatcaaaaaaaaagacattggtGCTGGAGAAATTACCTTTTTGaggtttgtttttgcttttgcatgTACGAcaatcatattttatgtttttttgtctaaacaaattataaaattaatatatttgtgtatatatctCTTCGCGCACATGAACCCTCATGGATCAGCACTGTTTTCTTCGATACAAAGTTGCTTATTTTAATGACCAAGaagtacatttacatgtatttttttcgTCGGCCTTTATCGAATGCAACATCGAAggaatttttttcgttcaaattGTTAACA

Function

symbol description
opn4xb Enables photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; heart; integument; liver; and visual system.

NR:

description
melanopsin-A-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240117.1 True 2015 mRNA 0.48 9 32724898 32733732

Neighbor

gene id symbol gene type direction distance location
pdlim5a pdlim5a,LOC107725153,LOC107704103,LOC107725180,LOC107594568,LOC107564363 coding downstream 5727 32684513 ~ 32719171 (-)
bmpr1ba bmpr1ba,bmpr1b,LOC107725167,LOC107704129,LOC107594551,LOC107667882,LOC107725174 coding downstream 43424 32638260 ~ 32681474 (-)
LOC122345374 LOC107748054,LOC107557581,LOC107704095,LOC107725138,LOC107594549 coding downstream 260275 32459458 ~ 32464623 (-)
ostf1 ostf1,LOC107704065,LOC107748057,LOC107659617 coding downstream 303300 32416225 ~ 32421598 (-)
LOC122345937 LOC107704040,LOC107557591,LOC107748061,LOC107725130,LOC103139561,LOC102299939,LOC100537556 coding downstream 382154 32315687 ~ 32342744 (-)
nipbla nipbla,LOC107667879,LOC107704848,LOC107725079,LOC107594572,LOC107571026 coding upstream 36497 32770229 ~ 32799945 (-)
slc1a3a slc1a3a,LOC107704160,LOC107725163,LOC107594554,LOC107667878,LOC107725178 coding upstream 68286 32802018 ~ 32812625 (-)
G41273 NA non-coding downstream 197829 32513392 ~ 32527069 (-)
G41217 NA non-coding downstream 244185 32480355 ~ 32480713 (-)
G41216 NA non-coding downstream 247058 32477262 ~ 32477840 (-)
G41191 NA non-coding downstream 279617 32444282 ~ 32445281 (-)
G41198 NA non-coding downstream 285753 32438619 ~ 32439145 (-)
G41303 NA non-coding upstream 33454 32767186 ~ 32767409 (-)
LOC122346085 LOC107748069,LOC107679343,LOC107594586 other downstream 410267 32283537 ~ 32314631 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other downstream 431116 32214031 ~ 32293782 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other downstream 550834 32113896 ~ 32174064 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other downstream 1001992 31721270 ~ 31722906 (-)
apooa apoo other downstream 1013161 31702453 ~ 31711737 (-)
LOC122345737 egflam,LOC107704151,LOC107667876,LOC107725173,LOC107725080,LOC107564362 other upstream 4685 32738417 ~ 32757869 (-)

Expression


Co-expression Network