LOC122345715 (LOC107687242,LOC107717337,LOC107558070)


Basic Information

Item Value
gene id LOC122345715
gene name LOC107687242,LOC107717337,LOC107558070
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30535834 ~ 30537915 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240129.1
GATCCAGACGAGAGGGTTTGTGGAAAGCAGAAGAGAGCTGGTAAGCGGGGCGTTTCTGCTCTGGATTGCTTCACCGGGGAGGTCACCCTTTTACCTTTAAATATCCAGGAGAACGAGAGCTACATTAGATGCTGTCTCACGACCTGAAGAGCGTCTCTCATCCAGAAGCCTCTGACTGAAACGCTTGGgtaacaAGAAAGGGACCGCCAAGTCTTCCGTACCAGACTGATCCTAATATAAAGAACCATGTGGAGTGACATCTTCTACCCTGAAAATCCTTGGAGAAGGGAGCAGCTCATCCGTAGAAATCAAGAGCTTCACGATCTGATGAAGAGCAACTTCAGAGCCACCAACCAACTGATTGATGTCATGAACAAGTACTTGAGCTGCTCCTTCGAACACATCTACCTGAACGAGAGCGCGACTCTTCGAGAGAACTGTGACATGATCATTGGATCCATTCATAAGATACAGGCAGAAGTAGAGAGGATTGACGTAAAGCTGAAGGAGAAGTTGGAGCCCACTCTGTACGAGAAACTGAGAAACCTGCCATCTCTGTCTTCTCCGGACTTTAAAGCCATTTCAAAGGCCTTTGAAGCAGTTTGTGGTATCGCAACCGTGGGAGCTACTGTTTTAGTTAGCTATTTAATTGAGAAAGGAATTATTCTGACAAACATAACAAGAACGTATGCTATAATTGCAGCAGGTACATTAGCCAGTGTTGGGCTAGCGGTGGTGTTCTTGGGGATCGATATGATTATTGAGGCCATCGTTGGGAAAATTGAGGGAGATAAACTTAAGGAGGCCCTGGAACAGTATGACCGGGCTTTGCAGGAATTCAGACCGGCGTCTGAAAAATATCAGGATAACATTACCTATGTCAGAAGCAGAATTgaggttttaaatgaataaaacatgaggttaaaatgttttctttttgtgcttGCTGGAATTTTAAACCAATAATCATTACATGTTTGTGCTGAAAAGGACAATAAATGACAGTTCTGCCATTAAAGGGTCATCATA

Function

NR:

description
PREDICTED: single-pass membrane and coiled-coil domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240129.1 True 1029 mRNA 0.44 3 30535834 30537915

Neighbor

gene id symbol gene type direction distance location
LOC122345124 si:zfos-128g4.1,LOC107675886,LOC107577831 coding downstream 12415 30520606 ~ 30523419 (-)
mbd2 mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559 coding downstream 24555 30491031 ~ 30511279 (-)
trabd2a trabd2a,LOC107558059,LOC107570885,LOC107717329 coding downstream 371817 30122226 ~ 30164017 (-)
june LOC107687249,LOC107721038,LOC107563389,LOC107684195,LOC107735627 coding downstream 501622 30027830 ~ 30034212 (-)
thap1 thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071 coding downstream 523825 30006999 ~ 30012009 (-)
LOC122344973 NA coding upstream 2582 30540497 ~ 30542440 (-)
LOC122344972 NA coding upstream 38373 30576288 ~ 30580328 (-)
ass1 ass1,LOC107740768,LOC107687233,LOC107689608 coding upstream 84289 30622204 ~ 30644747 (-)
surf4 surf4,LOC107740232,LOC107689610,LOC105890423,LOC103376134 coding upstream 108371 30646286 ~ 30652310 (-)
surf2 surf2,LOC107740795,LOC107581206,LOC107743090 coding upstream 115248 30653163 ~ 30655957 (-)
G40684 NA non-coding downstream 17379 30516065 ~ 30518455 (-)
G40680 NA non-coding downstream 22864 30504796 ~ 30512970 (-)
G40671 NA non-coding downstream 44956 30490514 ~ 30490878 (-)
G40677 NA non-coding downstream 51592 30484016 ~ 30484242 (-)
G40676 NA non-coding downstream 53608 30482021 ~ 30482226 (-)
G40670 ythdc2 non-coding upstream 26202 30564117 ~ 30564377 (-)
G40672 NA non-coding upstream 27769 30565684 ~ 30566156 (-)
G40698 NA non-coding upstream 29336 30567251 ~ 30570100 (-)
G40701 NA non-coding upstream 52282 30590197 ~ 30590640 (-)
LOC122345983 NA non-coding upstream 170858 30708773 ~ 30710678 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 442258 30087966 ~ 30093576 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 607159 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 880773 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 1045630 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 1209719 29323982 ~ 29326115 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 52928 30590843 ~ 30613141 (-)
G40711 NA other upstream 93113 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 251718 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 279817 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 793434 31331349 ~ 31350449 (-)

Expression


Co-expression Network