LOC122345718 (doc2b,LOC107587692,LOC107710708,LOC107689386,LOC107714896)


Basic Information

Item Value
gene id LOC122345718
gene name doc2b,LOC107587692,LOC107710708,LOC107689386,LOC107714896
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 22137839 ~ 22211535 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240133.1
cgccgCCTTGTTTCCTCTACTCTCACTTTCTCATGCTGAGTGACGGTCAGAGTAACTCCACTTTATCCGTCCTCTTGTAAGCTCCACAGTGAGACATGACAGACACCATGTTTGGCAGTGAGAATGAGCACTGGGTCTGTCCCAATGACAGACAGCTAATGCTTAGAGCAAAGTTACGAACAGGCTGGTCCATTCACACATTTCAGTCCGAGAGACAGAGGAAAGCTCAGACCCTTGAGAAAAGAGAGCTGGATCTCATCATGAGTGTCATCCACCGCGCTGAACAGCTCGAGATCATTGAGCAACACCGGATTGGacgtTTAGTGGAGCGTCTGGAGAACATGAGGAGGTCTGCTGTGGGAAACGGCCTGTCACAGTGCCTGCTGTGTGGAGAAGCGTTTGGGCTGCTGAGTTCTCCCTCCGTCCTCTGTTTGGTCTGCTGCATGAAGGTGTGCACTAAATGTGGAATTGAGACTACAGGCAGTCAAAAAAGGGCTCAGTGGCTTTGCAAGATCTGCAGTGAACGGAGAGAGGTGTGGAAACGTTCTGGAGCCTGGTTCTACAAAGCCTTGCCGAAGCATATTCGTCCCATTAAGGATTCAATTCTAGATAACAGGAGGCCAGTAATAGAAAGAGGAGAGCAGCTGCCAATGGCCAGGAGTGCACCAATCACCTATACATGGGCTCAAAGCAAAGtcAACTTAAGTGAAAGCGATGGCAGTGATGCTGAGCTCAGTGAATGCAGCGGTGACAGGAAGACCTTCATGTCTGAGACCGATCAAAGAAGAGATTCTGAATCAAGTGGAGGCCAAGTGCAGTCCAGCATCACCAGTCTAACTCAAACCAGCTTTCACATGGAAAGTCCCTTCAGCATCGCCAGCGAGCAAAGCAGCATCAGCTTCAGTCCGTGTCTGGAGGATGAGGTTATAGACCATAGTCAACCTTTACTGAGACCTGGAGGAAGGGAGACACGCAGATAGAGACAGAGGAGGAGCAGGTGTGAGAGTAGCATCTGCATGTATTGATGGATCAAGCTGAGTCTACTGCTGCTTCTGCAGTCCTCGTCTAACCTCATCCTTCTGCTTAGCCCCGGCCTGGAATGAACAAATGTTTCCAGCATGCAAATCCAACTTCAAGCGTGTGACACGTTCCCAAGTCTTTGAAATCACATTTAGTGTTGTCATTGTCACATTTTACAGATTAGTTTTTAAAGGTGGCATTATCTAAAAGGGAGAAAAATCAGTGGTTTAGTCAAGAACCCATTTCAAACAAGAAAAAGCCTATGCACCTCTCCCCGTCACAATCTGATCATCTATTAAAACATTGCATGTTaatttatacaaacaaaaacaaaaaaggtttcGACAGCATTTAAGAACTTTAcgaattcataaaaatacaaaaaaaatatttagtcttgtttgaaagggggaaaaaatacattaaatgcattttgcttaAAAGATAAGTCAATTATCTGCTAGTGAGGAAGTAAAATTTTCTTGCTTTAAGAACATTTTTGCTTACCCCACTGccagttcattttat

Function

symbol description
doc2b Predicted to enable calcium ion binding activity and calcium-dependent phospholipid binding activity. Predicted to act upstream of or within chemical synaptic transmission; intracellular protein transport; and regulation of calcium ion-dependent exocytosis. Predicted to be located in membrane. Orthologous to human DOC2B (double C2 domain beta).

NR:

description
PREDICTED: double C2-like domain-containing protein beta isoform X1

GO: NA

KEGG:

id description
K19939 RPH3AL; Rab effector Noc2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240133.1 True 1548 mRNA 0.45 9 22137839 22211535

Neighbor

gene id symbol gene type direction distance location
doc2b doc2b,LOC107681901,LOC107685552,LOC106603746,LOC107587692 coding downstream 21814 22045299 ~ 22116025 (-)
castor2 gatsl2,LOC107685562,LOC107587690,LOC107595468,LOC107681899 coding downstream 101525 22020667 ~ 22036314 (-)
polr2j polr2j,LOC107587688,LOC107595521,LOC107681903 coding downstream 136224 21999494 ~ 22001615 (-)
alkbh4 alkbh4,LOC107712145,LOC107710716,LOC107681883 coding downstream 138427 21997636 ~ 21999412 (-)
lrwd1 LOC107712122,LOC107587741,LOC107681902,LOC107710709 coding downstream 140422 21989945 ~ 21997417 (-)
tmem248 tmem248,LOC107714897,LOC107572429,LOC107691774,LOC107689376,LOC107587695,LOC107710724 coding upstream 3804 22215339 ~ 22227188 (-)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding upstream 19345 22230880 ~ 22240821 (-)
tmem132e tmem132e,LOC107691770,LOC107689377,LOC107567383 coding upstream 95653 22307188 ~ 22555178 (-)
dtx2 dtx2,LOC107600799,LOC107691768,LOC107709752,LOC107689380 coding upstream 509193 22720728 ~ 22736661 (-)
gtf2ird1 gtf2ird1,LOC107600764,LOC107709753 coding upstream 526548 22738083 ~ 22759778 (-)
LOC122344815 NA non-coding downstream 96572 22038360 ~ 22041267 (-)
LOC122346224 NA non-coding downstream 97805 22039901 ~ 22040034 (-)
G38543 NA non-coding downstream 127732 22008886 ~ 22010107 (-)
G38523 NA non-coding downstream 261254 21867615 ~ 21876585 (-)
G38521 NA non-coding downstream 270378 21867128 ~ 21867461 (-)
G38634 NA non-coding upstream 580155 22791690 ~ 22793053 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding upstream 662436 22873971 ~ 22876437 (-)
G38747 NA non-coding upstream 824922 23036457 ~ 23037470 (-)
G38767 NA non-coding upstream 1134054 23345589 ~ 23345797 (-)
G38769 NA non-coding upstream 1146039 23357574 ~ 23358147 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 253817 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 311734 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 518256 21612688 ~ 21619583 (-)
G38359 NA other downstream 768791 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 1201742 20906043 ~ 20936097 (-)
nrgna nrgna other upstream 915677 23127212 ~ 23132008 (-)
LOC122345364 NA other upstream 1390701 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 1540345 23751880 ~ 23756588 (-)
G38973 NA other upstream 1675768 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 1768129 23979664 ~ 23997739 (-)

Expression


Co-expression Network