ddx31 (ddx31,LOC107597806,LOC107741444,LOC107587329,LOC107690663)


Basic Information

Item Value
gene id ddx31
gene name ddx31,LOC107597806,LOC107741444,LOC107587329,LOC107690663
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8594064 ~ 8609276 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240151.1
CACTGTTTTGAAGTGAATATCACTCGCAAACACACATTTTCGCCATTTAAACCAAGTACAATGAGCCACTTATCATTTTGTGAGTAGTTTGACGTGTCTGTGTGGGGGTTGTGTAGATCAGCAGCTCCTGTGTTTTTTAATAGCCGGTTTACAATCATGGCTGAGGACATGCTGATGCTCAACATCTCCTCGGATCCGGGAAAGTTTCACAGAAAGACAACCCGAAGACTCCCGTCAACGGCAGAGAAATGGGCACAGAAAAAGCGAGAATCAAAGAGGAAGGCTGTCTTTGAGCCCCAGGAGAGCAGCGCTTCCAAACAGAGGAAGATTAATCAAACTGGTCAACAGCACACACATAAGCAAAAGCTGCAAACCCCCAGAAGCCCCTCTCAGAGGAGTAATAACAGAGACGCAGAGGAGAACGGCTATCAGGGAGAAAACTCTGCTGCAAAGTCCCCATCGAAGGTGAAAACATTTCCAAAGAAAGCTCCAGAAGGGCTCGAGGACCATGGCAGACCATTTATCAAGACATCGTCTCTATTCAGAAACAACCCAGAGATCCCTGATGTCCTCAGtCCTACTGTAAATCAAGTGAAGGAGAAGGTCTTCACCAGCGACATGTTTGAAGAACTCGATCTACATCCTCATTTGGTGGCAACGCTCCATAAGGTGTTGAATGTAACGAGCATGACGAGTGTCCAGAAGAAAACCATACCGGTGTTGATGTCTGGAAAAGATGCTGTTGTGCGCTCCCAGACCGGATCAGGAAAAACATTGGCGTATGGAATTCCAGTGGTTCAGTTCTTACAAGCAATGCAGCCTAAAGTGAAGAGATCAGATGGGCCTTTGGCTGTCGTGATTGTTCCTACCAGAGAGCTTGCCCTGCAGAGCTTTCAGACGTTTCAGAAGCTTCTAAAACCTTTCACATGGATCGTGCCTGGAGTTCTGATGggaggagagaaaagaaaagcagaaaaagccaGACTGAGGAAGGGCATTAATGTTCTGATCTCGACTCCGGGCCGACTGGTGGACCACATAAAGAACACCCTAAGTATTGCTTTCAGCGCAGTGCACTGGCTCATTCTGGATGAAGCCGACAGGATTCTGGATTTGGGCTTTGAGAAAGATCTGACTGTGATTCTAAATGCTCTGAACGCTACTGGACTTGTCCGGCAGAATGTGCTGCTTTCAGCCACGCTCACCGAGGGACTGTCCCGATTAGCCAGTATCAGTATGAAGGAGCCCGTGAGTATCCATGTGTCAGAGGCGAGCGAGGAGACAGTTGAAGCGTGTCCCCAGGCGGCCCCTCAGGCTCTGTCAGACAGCTATGCGGTGCCTGAGAGGCTGCAGCAGCACGTTGTGGTGGTGCCCAGCAAACTCCACCTGGTCTGTTTGGCTGCCTTTATTCTGGCCAAATGCAAGTTTGAGCAGCGGCAGAAGCTGATCGTTTTCATATCCAGCTGTGAGGCCGTGGAGTTTCTGCTTACTCTCTTCAATGCAGTCCTCTGTGAGAAGCCCAGCACCACATCAACCAAACATACCTCAGCGTCCCTTAACTTCTACAGGCTTCACGGCAACATGAAACAAGAGGAGCGCACTGAAGTCTTCCAGGAGTTCTCTCAGTGTAAAACTGGTATTCTGCTGTGCACAGATGTTGCTGCACGTGGATTGGATCTGCCTCAGGTTACGTGGATTGTTCAGTATAACCCCCCTGTTTCTGCCGCGGAGTATGTTCATCGTGTCGGCCGCACAGCACGAATTGGAGCTCAGGGAAGCAGCCTGCTCTTCCTCACCCCCTCTGAGACGGCTTTTGTGGATGTGCTAGCCAATCACAACATCAGTTTGTCCGAAATGAAGATGGAGGACGTGTTGGCCAATCTGATGAAGGACGAGCGATTCAAAGGCAGAGGGAAATGGGACAGTAAGAGATCAGCTGCTGCTTTTGAGCAGGAGGTACGAGAGAGAGCCACCGTTTTACAGACTGACTTTGAGAATTATGTTCATGCCAATAACGAGTCTCTGCAAACAGCGAAGAGCGCACTGCAGTCTTTCCTGAGAGCGTACACCACATACCCCTCCAGTCTGAAACACATCTTCCACATCCGCAGCCTGCACCTGGGCCACGCTGCTAAGAGCTTTGGCCTGAGGGACGCACCCCAGGGCCTGGGCAGCTCCACAACCACTAATCCTGCCAACAGCAAAGACTCCAAGAAGGGCAAAGACAAAGCCAAGAGGCCTCCCAAGAAACTCACGGCGAGGGAGCGAGTGTCAAACCTAATGCGCTCCGAGTATCTCAGTGGGATAGACGGACAATCCGAGTctaagaagaagaggaggaaaaagaagaaaggtcAAGCAGAGGAAGAGCAGTCTCCCGCAGAATAAAACGGGAGACTTCGGGAGAGATCAGTGGCTCTTTTAATGCTGAGGTCGGAGTCCTTGCGAGCCAGGTGGATTCTCAGGGTTGAACacacaggtgttttttttatacagagtgactttttttttcttttcttttttttttacctgtaacAAAGCACAAACAGTCAGCAGTGCGGACCCGAAAACCTGCTTTTACCATCtgcgtcaaaaaaaaaagcttgtgcaaatgttaaaataggCTTAATGGAGTGAAATCCGTATGGGATGTTTCATTGCTCGGTCAGTTCACctctaaatgtattatatatgcgGTGCcataaatatggatatttaagCAATGTGATTTACATTAATTATGCTGTAATACAGTcacagtattttatataaaagtgagTAAGCCTCTTTAA

Function

symbol description
ddx31 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be involved in ribosome biogenesis. Predicted to be active in nucleus. Orthologous to human DDX31 (DEAD-box helicase 31).

NR:

description
probable ATP-dependent RNA helicase DDX31 isoform X1

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14806 DDX31, DBP7; ATP-dependent RNA helicase DDX31/DBP7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240151.1 True 2792 mRNA 0.48 20 8594064 8609276

Neighbor

gene id symbol gene type direction distance location
si:ch211-215c18.3 si:ch211-215c18.3 coding downstream 19481 8569849 ~ 8574583 (-)
thy1 NA coding downstream 25077 8567082 ~ 8568987 (-)
usf1l LOC107709708,LOC107681234 coding downstream 26986 8561395 ~ 8567078 (-)
f11r.2 LOC107681233,LOC107722769,LOC107587332,LOC107598159,LOC107677439,LOC107709686,LOC107597734 coding downstream 44531 8546581 ~ 8549533 (-)
f11r.1 LOC107597734,LOC107722768,LOC107709707,LOC107677438,LOC107681232,LOC107587332 coding downstream 50679 8537692 ~ 8543385 (-)
ak8 ak8,LOC107681224 coding upstream 2236 8611512 ~ 8631326 (-)
tsc1a LOC107709700,LOC107597815,LOC107681228,LOC107690665 coding upstream 23619 8632895 ~ 8643790 (-)
dpp7 dpp7,LOC107709692,LOC107560239 coding upstream 262004 8871280 ~ 8876498 (-)
stxbp1b stxbp1b,LOC107560235,LOC107587321,LOC107690675,LOC107715760,LOC108423604,LOC108255382,LOC107681214 coding upstream 328978 8938254 ~ 8949378 (-)
LOC122344627 LOC107560223,LOC107711009,LOC107681213 coding upstream 382907 8992183 ~ 8997534 (-)
G34401 NA non-coding downstream 118884 8474979 ~ 8475180 (-)
G34400 NA non-coding downstream 120715 8472323 ~ 8473349 (-)
G34396 NA non-coding downstream 126205 8467620 ~ 8467859 (-)
G34395 NA non-coding downstream 128678 8464788 ~ 8465386 (-)
G34392 NA non-coding downstream 130461 8463373 ~ 8463603 (-)
G34573 LOC107681240,LOC107587323,LOC107709680,LOC107757966,LOC107690673 non-coding upstream 279710 8888986 ~ 8890348 (-)
G34574 LOC107709680,LOC107560234,LOC107715750,LOC107690673,LOC107681240 non-coding upstream 296131 8905407 ~ 8905624 (-)
G34575 NA non-coding upstream 307256 8916532 ~ 8916931 (-)
G34577 NA non-coding upstream 315776 8925052 ~ 8925317 (-)
G34578 LOC107715750,LOC107587423,LOC107709820 non-coding upstream 316394 8925670 ~ 8927031 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 162478 8429700 ~ 8431586 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other downstream 179258 8411882 ~ 8414806 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other downstream 430038 8160877 ~ 8164026 (-)
si:dkey-220k22.3 NA other downstream 872306 7718565 ~ 7721758 (-)
LOC122345606 LOC107712378 other downstream 882240 7706970 ~ 7711824 (-)
LOC122345093 NA other upstream 64953 8674229 ~ 8677718 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other upstream 320194 8929470 ~ 8930053 (-)
vamp5 LOC107594989,LOC107681225 other upstream 606222 9215498 ~ 9220528 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other upstream 728552 9337828 ~ 9402623 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 1715683 10324959 ~ 10335343 (-)

Expression


Co-expression Network