mbd2 (mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559)


Basic Information

Item Value
gene id mbd2
gene name mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30491031 ~ 30511279 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240155.1
GCTCTGTCGCGGAGGCGGGGCTTTCGGGTCAGCGGGGGGCGGGGCCTGCGGTTGCCAGGCGCTGGGTCACTTGTGTGGGAAGTGCCGAAATTTCAACGCGTCACAGCCGCGTTACGCACGGATCACACGCAGAATCTGATCGCCGACGAGCTCGAGGGAGCGACGCGTTTAACGGCGGCACTTTAAGCGGAGAACTAGTCCTCTAGCTGATAACTCAGCGGCTCTGCTACTAACTACTACtacaccagcagcagcagctcgtCCGCGAGCGACACTCACGCGTCCGCATCTCGGGGCTCGGATCCCAGCGCTTCTGATCGAGCGGATCGATCAATCAATGATCATGGAGAGGAAGAGGACGGACTGTCCGGCGCTTCCACCCGGCTGGAAGAAAGAAGAAGTGATCCGGAAGTCCGGGCTGAGCGCTGGGAAGAGCGATGTGTATTATTACAGTCCCACAGGAAAGAAGTTCCGGAGTAAACCACAGCTGTCCCGCTATCTGGGGAACTCGGTGGATCTGGGATGCTTCGACTTCCGGACGGGCAAAATGATGCCCAGCAAGATGCAGAAGAACAAGCAGAGACTGCGCAGCGACAACCTCAGCCTGAGCAAGgggAAGCCGGATCTGAACACAGCTCTGCCCATCAGACAAACAGCCTCCATCTTCAAACAGCCGGTCACTAAAGTGGTCAACCATCCCAACAACAAGGTCAAGACCGACCTCCAGAGAGCCACGGAGCAGCCCAGACAGCTGTTCTGGGAGAAGCGTCTGAAGGGTCTGCGGTCATCGGACGTGTCGGACGAGGCGCTCCGGACGATGGACCTGCCCCGAGGTCTCCAGAGTATCGGGCCGGACTCGTCGGACGAGACGCTCCTGTCGGCCATCGCCAGCGCCCTTCACATGAGCTCGGCGCCCATCACCGGTCAGACGTCGTCGGCGGCCGAGAAGAACCCGGCCATCTGGCTGAACACGTCCCAGCCGCTCTGCAAGGCCTTCACCGTCACAGACGAAGACATACGGTTGGTCAGTGCACTGGAGTCCGGCTCCGCCCCTCAGTGGACGCCTGGATATGATGTCATCAGCCTGCGTCAGCGGCACACGTTCAATAACACAGTACCCATAGCTTCAGCCAAGCGTATTTTTTGAtgtacatatctatatataattgaGAACAATGCTTATTTTGTGTgagacagaagaaagaaagtgttttaTACGGGCAAACACGGAGCAATACTTCCTCTCGTCCAATCAGGTCAGCGGCGCAGGGTTTTATTGTGAACTCTTTTTACTTCGGGCCGATGCCGTCGCTCTCTTCAGGGTCTGTAACGAATGATTAATACATCTGCAAATGtatgaatgaaaaatgcttatttaagaaaaaaattttaTACCTTGagataaaaatgtgtacatttctTGCATCATTCTAGAGTAAATAAAAGATTATATTcacaaa
>XM_043240156.1
GGGGCTTTCGGGTCAGCGGGGGGCGGGGCCTGCGGTTGCCAGGCGCTGGGTCACTTGTGTGGGAAGTGCCGAAATTTCAACGCGTCACAGCCGCGTTACGCACGGATCACACGCAGAATCTGATCGCCGACGAGCTCGAGGGAGCGACGCGTTTAACGGCGGCACTTTAAGCGGAGAACTAGTCCTCTAGCTGATAACTCAGCGGCTCTGCTACTAACTACTACtacaccagcagcagcagctcgtCCGCGAGCGACACTCACGCGTCCGCATCTCGGGGCTCGGATCCCAGCGCTTCTGATCGAGCGGATCGATCAATCAATGATCATGGAGAGGAAGAGGACGGACTGTCCGGCGCTTCCACCCGGCTGGAAGAAAGAAGAAGTGATCCGGAAGTCCGGGCTGAGCGCTGGGAAGAGCGATGTGTATTATTACAGTCCCACAGGAAAGAAGTTCCGGAGTAAACCACAGCTGTCCCGCTATCTGGGGAACTCGGTGGATCTGGGATGCTTCGACTTCCGGACGGGCAAAATGATGCCCAGCAAGATGCAGAAGAACAAGCAGAGACTGCGCAGCGACAACCTCAGCCTGAGCAAGgggAAGCCGGATCTGAACACAGCTCTGCCCATCAGACAAACAGCCTCCATCTTCAAACAGCCGGTCACTAAAGTGGTCAACCATCCCAACAACAAGGTCAAGACCGACCTCCAGAGAGCCACGGAGCAGCCCAGACAGCTGTTCTGGGAGAAGCGTCTGAAGGGTCTGCGGTCATCGGACGTGTCGGACGAGGCGCTCCGGACGATGGACCTGCCCCGAGGTCTCCAGAGTATCGGGCCGGACTCGTCGGACGAGACGCTCCTGTCGGCCATCGCCAGCGCCCTTCACATGAGCTCGGCGCCCATCACCGGTCAGACGTCGTCGGCGGCCGAGAAGAACCCGGCCATCTGGCTGAACACGTCCCAGCCGCTCTGCAAGGCCTTCACCGTCACAGACGAAGACATACGggAGCAGGAGCTGAAGGTGCATCAGGCTCGACGCAGTCTGGAGGAAGCTCTGATGGCCGATGGTTTGGCTCGAGCCGCCGAGTCCAGCCGAGACACACAGGGGAGAGCGGCGTGAAGAGACAGGTTGGTCAGTGCACTGGAGTCCGGCTCCGCCCCTCAGTGGACGCCTGGATATGATGTCATCAGCCTGCGTCAGCGGCACACGTTCAATAACACAGTACCCATAGCTTCAGCCAAGCGTATTTTTTGAtgtacatatct

Function

symbol description
mbd2 Predicted to enable DNA binding activity. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human MBD2 (methyl-CpG binding domain protein 2).

NR:

description
PREDICTED: methyl-CpG-binding domain protein 2 isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11590 MBD2; methyl-CpG-binding domain protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240155.1 True 1460 mRNA 0.54 6 30491031 30511279
XM_043240156.1 False 1265 mRNA 0.59 7 30491333 30511263

Neighbor

gene id symbol gene type direction distance location
trabd2a trabd2a,LOC107558059,LOC107570885,LOC107717329 coding downstream 327014 30122226 ~ 30164017 (-)
june LOC107687249,LOC107721038,LOC107563389,LOC107684195,LOC107735627 coding downstream 456819 30027830 ~ 30034212 (-)
thap1 thap1,LOC107563391,LOC107684196,LOC107687269,LOC107558071 coding downstream 479022 30006999 ~ 30012009 (-)
LOC122344968 mob3b,LOC107558072,LOC107563392,LOC107721040,LOC108414757 coding downstream 485062 29997436 ~ 30005969 (-)
LOC122344964 LOC107721044,LOC107563395,LOC107558067 coding downstream 520122 29967407 ~ 29970909 (-)
LOC122345124 si:zfos-128g4.1,LOC107675886,LOC107577831 coding upstream 9327 30520606 ~ 30523419 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding upstream 24555 30535834 ~ 30537915 (-)
LOC122344973 NA coding upstream 29218 30540497 ~ 30542440 (-)
LOC122344972 NA coding upstream 65009 30576288 ~ 30580328 (-)
ass1 ass1,LOC107740768,LOC107687233,LOC107689608 coding upstream 110925 30622204 ~ 30644747 (-)
G40671 NA non-coding downstream 153 30490514 ~ 30490878 (-)
G40677 NA non-coding downstream 6789 30484016 ~ 30484242 (-)
G40676 NA non-coding downstream 8805 30482021 ~ 30482226 (-)
G40654 NA non-coding downstream 71624 30297394 ~ 30419407 (-)
G40418 NA non-coding downstream 373168 30116408 ~ 30117863 (-)
G40684 NA non-coding upstream 4786 30516065 ~ 30518455 (-)
G40670 ythdc2 non-coding upstream 52838 30564117 ~ 30564377 (-)
G40672 NA non-coding upstream 54405 30565684 ~ 30566156 (-)
G40698 NA non-coding upstream 55972 30567251 ~ 30570100 (-)
G40701 NA non-coding upstream 78918 30590197 ~ 30590640 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 397455 30087966 ~ 30093576 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 562356 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 835970 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 1000827 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 1164916 29323982 ~ 29326115 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 79564 30590843 ~ 30613141 (-)
G40711 NA other upstream 119749 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 278354 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 306453 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 820070 31331349 ~ 31350449 (-)

Expression


Co-expression Network