tbx3b (LOC107709835,LOC107592413,LOC107673376)


Basic Information

Item Value
gene id tbx3b
gene name LOC107709835,LOC107592413,LOC107673376
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9754034 ~ 9757833 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240164.1
CATAAAATCGATTTACCACGCCCTGACGAAGCACAGTTGGTTTAGATGTGTCCACGGAGCCAATCAGAAACGTCTGACCCGACCCGACAACAAACCACCACGCCGTCCCGAGATCCGGCAGAAGGTCGCCAGGGTTCATCATCTGTGCGCACTAAACCCCATAAAACAACCTTCACGGTCTCTGCAGTTGGGTTCTTCACTCAACGGGACAAAGCCATGAAAGCATGAAAATGGATGAAAAAGGCGAAATGCATTTTGACAAACTGTCTGCAACTTCTGGCGCACTGAAACCAGCACGATTCCACATAAGCTGAAGGCTTCAGAGAGGAGTTATTAGCTACCTCCGCTGTGAGGATGAAGTGACTCTTGAAGATTACGTTATGAAATAACCCCACAAGCAGCGAAGTTGAGAGAATGGCGTATCGCCACTTCATGCCGGTCAGCCCTACTGACCTCGCTGTTAGTTCGATGCTTGGACAGCAGTCCCGGTTTTTTCCTGTTGGATACGGGAAGCAGCAGTTTGCGAACGCGCTCCATAACTCGGTTCGTCTGGCGCTCAAAGACGCCGCGTCTCCCGCGCACCTCTCCGTGGAGACGAGAGCACCTGAGGATGACCCCGTGGTTCACCTGGAAGGCAAGGAACTGTGGGGGCAGTTTCACAGAAGCGGCACGGAGATGGTCATAACAAAGTCTGGAAGGCGCATGTTTCCAGCTTTCAAAGTGCGCTGCAGCGGCTTGGACAGAAAGGCGAGGTACATCCTGCTGATGGATATAGTCGCGGCTGATGACTACAGATATAAGTTTCACAACTCTCGCTGGATGGTTGCTGGAAAGGCCGACCCAGAAATGCCCAAACGAATGTACATCCACCCGGACAGTCCCGCTACGGGGGAGCAGTGGATGTCCAAAGCGGTGACATTTCATAAGCTCAAACTGACGAACAACATATCTGACAAACATGGATTCACCATATTAAACTCCATGCACAAATATCAGCCGAGGTTTCATATCGTTCGAGCCAACGACGTCCTCAAACTTCCGTACAgcacgttcaaaacctacgtgtTTCCCGAGACAGAGTTTATCGCCGTGACAGCGTACCAAAACGAAAAGATAACTCAGCTGAAAATTGACAATAACCCATTTGCAAAAGGATTCAGAGATACCGGAAATGGGAGACGAGAGaaaagGAAACAGCTGTTGCATCAGAAAAGTGATGTGGCCCCGAAAAAAGCCTGTGTGTCCACAGAGGACTCATCTTTCGACCAAAGTTCATCAAATCCTTCAATTCAAGAAACAAACGTCGTTACATCCACTTCAACAGATGCGAATGAGAGCGACGTCGATGGGTACGGAGATGAGAAGGAAAGCGATGAAGATGGAAAGCATTCAGTTTCTCAAGATGAGCAAACTTCTGCAGAAATCTCAACAACGGTGCAAGAGTCCAAGGACAATTCAAAACAGGAGCTGCAAGCAAATTGGAACACATGGCTcaacaacaaagaaaagcaTAGTAAAGAGGTTACTGAACGTTTAACCTTGGATAGAAAACATGCAGAACAATGCAAGTTTGTAGATGATTTGAATGATGTTTCTCAGAAGGCTTCGCTCACTCGGCATTATTACATCCCCGCTCCCGGCCTGATTAATTCTCTGTGTGTGCCGCCGCATGTCTTGTCAAATTTATGCCAGTTTAATTACGTTGGAACACTTCCGTTTTTGGCGTCTGGAGCAACAGGTCCTTGGTTATGCAGAAGGTCAAATGAAGGGGAGGGTCAAGATTACACCGCTTCAGTACCGACCTCACAACGAAGATTTATTGGCATGCAGCAGCAAAGAACGACTTCTCAGGGTGTGCTTGGAAATTTCTTGTCTTATCCACAGAGTTACACGACCTCATCTGCCGCCACGTCCTCTGCCGCATCGTACCAGGTTCAAGGACCACCCTTTTTCAGCGCTAGCTATGGATCCCGATGCGGACCCTGCCCTTTTCCAATGTTTCTGCACGGCCGAAAAATGCCACAAACCAGAACCGATACAAATCAGCATGCTGGTATTGCGACTCctggttcaaaacctaatgaGGATCAAAACACACAGCGTCGAGATCTCTAGAGACGTCTCTACAGGAACAAGATCAGCTGTAATGATGTGCATTTAGTCGATTGTATGTATCAACCGTCtggattaaaaattaatatatgctATTTATTCTTTAGTCTTTACCTGCTGtataaaagtgtgaaaaatatttaaaatacacaaag
>XM_043240165.1
CATAAAATCGATTTACCACGCCCTGACGAAGCACAGTTGGTTTAGATGTGTCCACGGAGCCAATCAGAAACGTCTGACCCGACCCGACAACAAACCACCACGCCGTCCCGAGATCCGGCAGAAGGTCGCCAGGGTTCATCATCTGTGCGCACTAAACCCCATAAAACAACCTTCACGGTCTCTGCAGTTGGGTTCTTCACTCAACGGGACAAAGCCATGAAAGCATGAAAATGGATGAAAAAGGCGAAATGCATTTTGACAAACTGTCTGCAACTTCTGGCGCACTGAAACCAGCACGATTCCACATAAGCTGAAGGCTTCAGAGAGGAGTTATTAGCTACCTCCGCTGTGAGGATGAAGTGACTCTTGAAGATTACGTTATGAAATAACCCCACAAGCAGCGAAGTTGAGAGAATGGCGTATCGCCACTTCATGCCGGTCAGCCCTACTGACCTCGCTGTTAGTTCGATGCTTGGACAGCAGTCCCGGTTTTTTCCTGTTGGATACGGGAAGCAGCAGTTTGCGAACGCGCTCCATAACTCGGTTCGTCTGGCGCTCAAAGACGCCGCGTCTCCCGCGCACCTCTCCGTGGAGACGAGAGCACCTGAGGATGACCCCGTGGTTCACCTGGAAGGCAAGGAACTGTGGGGGCAGTTTCACAGAAGCGGCACGGAGATGGTCATAACAAAGTCTGGAAGGCGCATGTTTCCAGCTTTCAAAGTGCGCTGCAGCGGCTTGGACAGAAAGGCGAGGTACATCCTGCTGATGGATATAGTCGCGGCTGATGACTACAGATATAAGTTTCACAACTCTCGCTGGATGGTTGCTGGAAAGGCCGACCCAGAAATGCCCAAACGAATGTACATCCACCCGGACAGTCCCGCTACGGGGGAGCAGTGGATGTCCAAAGCGGTGACATTTCATAAGCTCAAACTGACGAACAACATATCTGACAAACATGGATTCACCATATTAAACTCCATGCACAAATATCAGCCGAGGTTTCATATCGTTCGAGCCAACGACGTCCTCAAACTTCCGTACAgcacgttcaaaacctacgtgtTTCCCGAGACAGAGTTTATCGCCGTGACAGCGTACCAAAACGAAAAGATAACTCAGCTGAAAATTGACAATAACCCATTTGCAAAAGGATTCAGAGATACCGGAAATGGGAGACGAGAGaaaagGAAACAGCTGTTGCATCAGAAAAGTGATGTGGCCCCGAAAAAAGCCTGTGTGTCCACAGAGGACTCATCTTTCGACCAAAGTTCATCAAATCCTTCAATTCAAGAAACAAACGTCGTTACATCCACTTCAACAGATGCGAATGAGAGCGACGTCGATGGGTACGGAGATGAGAAGGAAAGCGATGAAGATGGAAAGCATTCAGTTTCTCAAGATGAGCAAACTTCTGCAGAAATCTCAACAACGGTGCAAGAGTCCAAGGACAATTCAAAACAGGAGCTGCAAGCAAATTGGAACACATGGCTcaacaacaaagaaaagcaTAGTAAAGAGGTTACTGAACGTTTAACCTTGGATAGAAAACATGCAGAACAATGCAAGTTTGTAGATGATTTGAATGATGTTTCTCAGAAGGCTTCGCTCACTCGGCATTATTACATCCCCGCTCCCGGCCTGATTAATTCTCTGTGTGTGCCGCCGCATGTCTTGTCAAATTTATGCCAGTTTAATTACGTTGGAACACTTCCGTTTTTGGCGTCTGGAGCAACAGGTCCTTGGTTATGCAGAAGGTCAAATGAAGGGGAGGGTCAAGATTACACCGCTTCAGTACCGACCTCACAACGAAGATTTATTGGCATGCAGCAGCAAAGAACGACTTCTCAGAGTTACACGACCTCATCTGCCGCCACGTCCTCTGCCGCATCGTACCAGGTTCAAGGACCACCCTTTTTCAGCGCTAGCTATGGATCCCGATGCGGACCCTGCCCTTTTCCAATGTTTCTGCACGGCCGAAAAATGCCACAAACCAGAACCGATACAAATCAGCATGCTGGTATTGCGACTCctggttcaaaacctaatgaGGATCAAAACACACAGCGTCGAGATCTCTAGAGACGTCTCTACAGGAACAAGATCAGCTGTAATGATGTGCATTTAGTCGATTGTATGTATCAACCGTCtggattaaaaattaatatatgctATTTATTCTTTAGTCTTTACCTGCTGtataaaagtgtgaaaaatatttaaaatacacaaag

Function

NR:

description
T-box transcription factor TBX3-like

GO: NA

KEGG:

id description
K10176 TBX2; T-box protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240164.1 True 2267 mRNA 0.47 7 9754034 9757833
XM_043240165.1 False 2234 mRNA 0.47 7 9754034 9757833

Neighbor

gene id symbol gene type direction distance location
tm2d2 tm2d2,LOC107709865,LOC107673424,LOC107750179,LOC107672780 coding downstream 1077 9750652 ~ 9752957 (-)
unc5db unc5db,unc5d,LOC107673416,LOC107709861,LOC107659286 coding downstream 72233 9579488 ~ 9681801 (-)
hdr LOC107659287,LOC107721544,LOC107673363,LOC107709863,LOC107594999 coding downstream 178227 9571202 ~ 9575807 (-)
LOC122345250 cyb561a3a,LOC107673362,LOC107721551,LOC107595000,LOC107659288 coding downstream 184740 9566515 ~ 9569294 (-)
zgc:153409 LOC105896809,LOC106958509,LOC103460788,LOC103154043,LOC107671222 coding downstream 188102 9565479 ~ 9565932 (-)
araf araf,LOC107709867,LOC107595004,LOC107673380,LOC107750175,LOC107672764 coding upstream 23005 9780838 ~ 9791734 (-)
imp4 imp4,LOC107595005,LOC107709870,LOC107750176,LOC107592341,LOC107672800 coding upstream 34354 9792187 ~ 9796033 (-)
rabl6b rabl6b,rabl6,LOC107750171,LOC107672784,LOC107673384,LOC107709868 coding upstream 40461 9798294 ~ 9808373 (-)
tcn2 tcn2,LOC107595007,LOC107709872,LOC107673413,LOC107672782,LOC107750173,LOC107592334 coding upstream 51036 9808869 ~ 9813130 (-)
si:ch211-102c2.8 LOC107595037,LOC107709829 coding upstream 59035 9816868 ~ 9829040 (-)
G34704 NA non-coding downstream 505993 9246920 ~ 9248041 (-)
G34594 NA non-coding downstream 693220 9013306 ~ 9060814 (-)
G34607 NA non-coding downstream 762721 8991101 ~ 8991313 (-)
G34606 NA non-coding downstream 763011 8988611 ~ 8991023 (-)
G34583 NA non-coding downstream 819895 8933911 ~ 8934139 (-)
G34869 NA non-coding upstream 6240 9764073 ~ 9764532 (-)
G34871 NA non-coding upstream 8435 9766268 ~ 9766607 (-)
G34877 NA non-coding upstream 19800 9777633 ~ 9778238 (-)
G35035 NA non-coding upstream 523576 10281409 ~ 10296141 (-)
G35047 NA non-coding upstream 579914 10337747 ~ 10341167 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other downstream 351411 9337828 ~ 9402623 (-)
vamp5 LOC107594989,LOC107681225 other downstream 533506 9215498 ~ 9220528 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 823981 8929470 ~ 8930053 (-)
LOC122345093 NA other downstream 1076316 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 1322448 8429700 ~ 8431586 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 567126 10324959 ~ 10335343 (-)
G35122 NA other upstream 703375 10461208 ~ 10461709 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 1110531 10868364 ~ 10874064 (-)
G35384 NA other upstream 1166094 10923927 ~ 10926163 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other upstream 1202478 10960311 ~ 10969118 (-)

Expression


Co-expression Network