LOC122345741 (pitpnb,LOC106585622,LOC108437411,LOC106580376)


Basic Information

Item Value
gene id LOC122345741
gene name pitpnb,LOC106585622,LOC108437411,LOC106580376
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26590925 ~ 26610395 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240170.1
ATGGTGCTCATCAAAGAATACCGCATTGTTCTGCCCTGTACCGTCGAAGAGtATCAAGTTGGGCAGCTGTACTCTGTGGCGGAAGCCAGCAAGAATGAGACCGGAGGAGGAGAGGGCATAGAGATTTTAAAGAACGAGCCCTATGAAAAGGATGGCGAGAGAGgacaatacacacacaaaatctacCATCTCAAAAGCAAAGTACCAGGCTTTGTAAAGGTTATTGCACCTGAAGGCTCGCTGGTGTTCCACGAAAAAGCCTGGAATGCCTTCCCTTACTGCAGAACAATTGTAACGAATGAGTACATGAAGGATGATTTTTTCATCAAGATTGAGACATGGCACAAGCCTGACCTTGGAACGCTAGAGAAtGTTCACAAATTGGACAGTTCTACATGGAAGTCTGTGGAGGTCACACCCATTGATATTGCAGACAAAGAACAAGTAATTCCTGGTGACTACAAGGCAGATGAAGATCCGGCTATTTTTCATTCAGTCAAGACTGGCCGAGGACCACTGGGCCCGAGTTGGAAGAGAGAGCTGGTTAATAACCCCGACTGCCCACGAATGTGTTCTTACAAGCTGGTGACGGTCAAGTTTAAGTGGTGGGGCCTTCAGAACAGAATAGAAAGCTTCATTCACAAGCAAGAGAAGAGGATCTTCACCAACTTCAACCGTCAGCTGTTCTGCTGGATTGATCAGTGGGTGGAGCTCGACATGGAGGACATCAGAAGGATGGAAGAGGAGACGCAGAAGGAGCTGGAGGAGcttcgCAGACAAGGTGAAGTGCGAGGAACCAGTGCTGCTGATGAGTGACGCCGGCCACGACTACAAAGGCTGTCCATGACTGACCCCTCCGAACCAGGGCCGGGACAATCACGCAAGGCTATTCCTCAAAATCGACAAATGCTGAAGCGCAAAAACCTATTTCCCAGAGGTTTCCCCCTAGGGCAGGGCTAGCCCTTGTGTTAGCTTCCTTCGCTCTTGTCTTGTCCTGCCGCCTTACTTTGGGAACATGCCGTTCACTAGCACTCATTGTTCCACAGAACACAGGTTCTGAATGCACACACGAGCACACGGATACACAAACACTGCCAGGTGTGAATTCCTTTGGGCTGATTTCCCATGAGACcttctttgctttgctttctctGCATTTGATCGCATGCTTCTTCTCAAATATCTTTTGGCCTTTTGGGATACTGCAGATACGTTACAAAGTGTTCTAAGATTATGTTGATGtcaataaactattaaaatcaaCCTTTTGTTAA

Function

symbol description
pitpnb Enables phosphatidylcholine transporter activity and phosphatidylinositol transfer activity. Acts upstream of or within photoreceptor cell outer segment organization. Located in trans-Golgi network. Is expressed in eye; retinal cone cell; retinal outer plexiform layer; and retinal photoreceptor layer. Orthologous to human PITPNB (phosphatidylinositol transfer protein beta).

NR:

description
PREDICTED: phosphatidylinositol transfer protein beta isoform-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240170.1 True 1274 mRNA 0.47 11 26590925 26610395

Neighbor

gene id symbol gene type direction distance location
LOC122345107 NA coding downstream 24502 26553706 ~ 26566423 (-)
LOC122344705 mn1,mn1b coding downstream 46412 26532335 ~ 26544513 (-)
trnag-gcc_64 NA coding downstream 479523 26111332 ~ 26111402 (-)
trnag-gcc_63 NA coding downstream 481355 26109500 ~ 26109570 (-)
trnag-gcc_62 NA coding downstream 489516 26101339 ~ 26101409 (-)
kat5b kat5b,kat5a,kat5,LOC107597226,LOC107592273,LOC107732605,LOC107680373,LOC107687657,LOC108427799 coding upstream 4747 26615142 ~ 26625016 (-)
im:7154036 LOC107730539,LOC107674895,LOC107564073,LOC107755658,LOC107702932,LOC107571525 coding upstream 15798 26626193 ~ 26637865 (-)
stip1 stip1,LOC107564074,LOC107674894,LOC107571522,LOC107755657,LOC107702934 coding upstream 28759 26639154 ~ 26647535 (-)
flrt1a LOC107695997,LOC107741023,LOC107702935,LOC107564076,LOC107755656,LOC107571526 coding upstream 62702 26673097 ~ 26719746 (-)
rps6ka4 rps6ka4,LOC107758164,LOC107698546,LOC107567284,LOC107702937,LOC108427766,LOC103040978 coding upstream 159536 26769931 ~ 26789018 (-)
LOC122344941 NA non-coding downstream 217103 26372619 ~ 26373822 (-)
G39585 NA non-coding downstream 437222 26153465 ~ 26153703 (-)
G39579 NA non-coding downstream 471842 26118474 ~ 26119083 (-)
G39574 NA non-coding downstream 807334 25782979 ~ 25783591 (-)
G39572 NA non-coding downstream 862455 25728237 ~ 25728470 (-)
G39712 NA non-coding upstream 266195 26876590 ~ 26883175 (-)
G39738 LOC107705276,LOC107586737,LOC107671348,LOC107663665,LOC107721875 non-coding upstream 471606 27082001 ~ 27084786 (-)
LOC122344810 LOC107662059,LOC107548517 non-coding upstream 505572 27115967 ~ 27146962 (-)
LOC122344809 LOC107671984 non-coding upstream 516734 27127129 ~ 27128456 (-)
LOC122344808 LOC107671984 non-coding upstream 530020 27140415 ~ 27142658 (-)
LOC122344921 NA other downstream 1022239 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 1308639 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 1832257 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 1842315 24746672 ~ 24748610 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other downstream 1996809 24587724 ~ 24594116 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other upstream 489420 27099815 ~ 27107385 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 772526 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 1275646 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 1645433 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 2713587 29323982 ~ 29326115 (-)

Expression


Co-expression Network