xbp1 (xbp1)


Basic Information

Item Value
gene id xbp1
gene name xbp1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3659704 ~ 3662910 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240173.1
GCGCTCCTTCAATTTTCAGACGTCGAAGGGGGAAGATATACCGGGGATTAAGACGCTTTTTCGGACGTTTTCCCACCCCTAAACAAACACCGAAAGGGTCCTAAACCAGAAAACCACACAACATGGTCGTAGTGACAGCAGGGACCGGAGGAGCCCATAAAGTCCTCCTGATATCGGGGAAACAGAGCCGCTCCATATCTGTCATGATCCCGAACCAAGCCTCTTCAGACTCCGACTCCGCCGTCTCCGGACCACCGATGCGCAAAAGGCAGAGACTCACGCACCTCAGCCCAGAGGAAAAAGCGCTGAGAAGgaaacTGAAGAACAGAGTTGCTGCACAGACGgcaagagacagaaaaaaggcaaaaatggGGGAGTTGGAGCAGCAAGTCTTGGAGTTGGAGCTCGAGAATCAGAAACTTCACGTCGAGAACAGACTGTTGCGAGAAAAGACAAGTGATCTGCTCAGTGAGAACGAGGAACTAAGACAGAGACTGGGGTTGGACACTTTGGAAGAGAAGGAAAagGTCCAGGTGTTGGAGTCCGCGGTGAGCGATTTGGGTTTGGTGACCGGGTCTTCTGAGTCCGCAGCACTCAGGCTACGTGTGTCCGCAGCAGGTGCAGGCCCAGCAGTCCCCAAATCTGAAGACTTCTCCATGGATACTCACAGCCCTGGCCCTTCAGACTCTGAGTCTGATCTCTTGCTTGGTATTCTGGACATCCTTGACCCAGAGCTCTTCCTCAAGACGGAGCTCGAGGAAGCAGAGGAGCCCGAGCCAGAGCTTGTGCTGGACGGAGCTGCGGGAGAGCGAGTACCTGCCTCCCCATCTGCAGCTTTGGGGCCCGCACCAGTTAAGCTGGAGGCCCTTAATGAACTGATCCACTTCGACCACATCTACACCAAACCCGCCGAGGTGGTGAGCGAGGAGAGCATCTGCGAGGTCAAAGGCGAGGATTCGGTCGCCTTCTCTGAGGTCGACGAAGAAATCGTGGTGGAAATCAAAGACGAGCCGGAGGAGATGGTCATCCCTGCGGTGGACCGGAGTCCAGACGCGGTCGATGACTTCTTCTCCGACGCCTCTTCCTTCGGCGGCTACGAGAAGGCTTCGAGTCTGACGGATGCGTGCAGTGACTCTGGATACGAGAGGTCTCCTTCCCCTTTCAGTAACATCTCGTCCCCGCTCTGCTCCGAGGGCTCTTGGGATGATATGTTTGCGAATGAACTCTTTCCCCAACTGATCAGTGTCTGAAGCTTGCGTACGAGATCACGCCTGCCTTTGCTCTCTTATTGTAAGTGATTGCTTCATAGTGATAGTACCCCAGTAACTTCTCTTGCAGTTTAGACCAAAGGCATTGCTTTAAGGCTTCTGTTGTAATAACTCTCTGTACAGTTGAAGCGCAACCCAGTATTTTTGTTGGGGAAGGGATTGGGGAGGGGAGGGAAACGTTTTAAACTACgtctatttatttgtgtatctCTCTTTTCCAGAGTTTTCTGTAACGTAATCCGTCTGCTTTGATGTACaacttaattttattgtaaatgctCTCCtttaatgttgcattaaaaaatttttgcattgca

Function

symbol description
xbp1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within gland development; hatching; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including axial mesoderm; axis; digestive system; ectoderm; and germ ring. Orthologous to human XBP1 (X-box binding protein 1).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: X-box-binding protein 1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0035188 hatching biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
K09027 XBP1; X box-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240173.1 True 1585 mRNA 0.52 6 3659704 3662910

Neighbor

gene id symbol gene type direction distance location
si:dkey-1k23.3 LOC107560961,LOC107656799,LOC107702214,LOC107755870 coding downstream 37300 3619178 ~ 3622404 (-)
taok3a taok3,taok3a,LOC107699916,LOC107697236,LOC107708246 coding downstream 165511 3422884 ~ 3494193 (-)
txnrd2.2 txnrd2 coding downstream 241963 3390994 ~ 3417741 (-)
gnb1l gnb1l,LOC107708243,LOC107755863,LOC107551810 coding downstream 283178 3343559 ~ 3376526 (-)
LOC122345463 sema4c,LOC107699920,LOC107697240 coding downstream 570182 3022849 ~ 3089522 (-)
kremen1 kremen1,LOC107656811,LOC107561268,LOC107560966,LOC107702222 coding upstream 91069 3753979 ~ 3809696 (-)
susd2 LOC107656804,LOC107561267,LOC107702221,LOC107707826,LOC107560963 coding upstream 159208 3822118 ~ 3847170 (-)
slc39a14 slc39a14,LOC107656812,LOC107560970,LOC107561269,LOC107702220,LOC107707824 coding upstream 186583 3849493 ~ 3873889 (-)
LOC122345410 hspb8,LOC107720866,LOC107561261 coding upstream 474621 4137531 ~ 4141903 (-)
LOC122345409 htr7c,LOC107561270,LOC107707833,LOC107656814,LOC107560967,LOC102292089 coding upstream 624889 4287799 ~ 4319735 (-)
G33124 NA non-coding downstream 6816 3648466 ~ 3652888 (-)
G33114 NA non-coding downstream 40650 3617937 ~ 3619054 (-)
G33008 NA non-coding downstream 269325 3388284 ~ 3390379 (-)
G32998 NA non-coding downstream 316464 3340599 ~ 3343240 (-)
G32999 NA non-coding downstream 332463 3293606 ~ 3327241 (-)
G33140 htr7c,LOC107755817,LOC107707833,LOC107656814,LOC107561270,LOC107702213,LOC107560967 non-coding upstream 235681 3898591 ~ 3904546 (-)
LOC122345413 NA non-coding upstream 304946 3967856 ~ 3968964 (-)
LOC122345411 NA non-coding upstream 387872 4050782 ~ 4051472 (-)
G33300 NA non-coding upstream 1197089 4859999 ~ 4902402 (-)
G33310 NA non-coding upstream 1250971 4913881 ~ 4915751 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other downstream 646885 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 699527 2951462 ~ 2960177 (-)
add2 add2,LOC107668755 other downstream 1053787 2586587 ~ 2605917 (-)
snrnp27 snrnp27 other downstream 1074252 2580548 ~ 2585452 (-)
G32857 NA other downstream 1105558 2496504 ~ 2554146 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other upstream 81765 3744675 ~ 3752764 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other upstream 215740 3878650 ~ 3898578 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other upstream 481946 4144856 ~ 4193081 (-)
G33175 NA other upstream 959580 4622490 ~ 4623058 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 3161261 6824171 ~ 6826182 (-)

Expression


Co-expression Network