crata (crata,LOC107740932,LOC107691030,LOC107723360,LOC107587366,LOC107597084,LOC107693856)


Basic Information

Item Value
gene id crata
gene name crata,LOC107740932,LOC107691030,LOC107723360,LOC107587366,LOC107597084,LOC107693856
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7141629 ~ 7148537 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240177.1
TGAAGCGGAGCAGCGCAGCAGTGATGGCGCTGCTGGTTGTTCTTTTCGGTGGACTCTGACCGCGCTGATCCTATCTGGCCGTCCCTCCTCTCAGGCCTTGATTTGGGGGCGTTTTAGTGAACTTCAGTTATGTTGGGCATTCTTGCCAGGACGATGGTTAAGGCTTGCATGGTGAAACCCTCCAGCCTGGTAAAGCCAGTGTCAGTGACACGGGTCACTGGTCGTTACTTGGCCCACCAGGAGGGTCTGCCTAAGCTTCCAGTGCCACCGCTGCAGCAAACATGCGAACACTATCTGGCTGCCCTGACGCCCATCGTGGACCCGGAGGAGCTGGATCACACCTGCCAGCTGCTGGAGGAGTTTCAGAAGTCAGGCGGTGTAGGTGAGAGACTACAGAAGGGCCTGGAACAACGAGCCAAGAAGTCGGAGAACTGGCTCTCTGACTGGTGGTTACAAACAGCCTACCTGGACTACCGGATGCCTGTTGTCGTCCATTCAAGTCCTGGGGTTGTCCTTCCCCGGATGGAGTTCAGTGACCGTCAAGGCCAAATGAGaTATGCAGCAAAATTAATCGCTGGAGTTTTAGATTTCAAGAGAATGATTGACAATGAAACGTTGCCAGTGGAGTATCTGGGTGGAAAGCCGCTCTGCATGAACCAGTACTATCAGGTGCTCTCGTCTTGCCGGATCCCTGGAACAAAGAGGGACAGTGTGGTCAACTACGCCCGGGACAAGAGACCCCCCACACACATCACTGTAGTGCACAACTTTCAGTTCTTTGTGCTGGATGTGTATAACAGTGACGGCACGCCGCTGACTGTAGACCAGATCTACATCCAGCTGGAAAAGATCTGGAACTCGTCTTTACAGACCAACAAAGAGCCTATAGGCATCCTCACCTCCCACCACCGTAACAGCTGGGGCAAAGCTTACAACAACCTCATTAAGGATAAAACGAACAAAGAGTCTGTGAGAGCCATCCAGAAGAGTATCTTCACAGTCTGCCTGGATGCCCCCATGCCACGTGCTTCTGATGATATGTACCGCACACGCGCCGGAGTTCAGATGCTGCATGGAGGGGGAAGCAGGTGGAACAGCGGAAATCGCTGGTTTGACAAAACACTGCAGTTTATTATTGGAGAGGACGGGACATGCGGGCTGATCTATGAACACGCCCCCGCTGAGGGTCCTCCCATCGTGTCACTCATCGACCATGTGGTGGAATACATGAAGTCGACAGACATGGTCCGGACCCCGATGGTCCCGCTGCGTATGCCACAGAAGCTCCGTTTCAACATCACGCCAGAGATCAAAAAGGACATCGAGGAGGCCAAACAGAACATGAACATAATGGTGCATGACTTGGACGTGAAAGTCAATGTGTTTTCCCATTTTGGCAAAGATTTCCCAAAGTCGCAGAAGATGAGCCCCGATGCCTTTATTCAGGTGGCTCTCCAACTGGCGTACTACAGGATTTACAAGCGCTGTTGTCCTACCTATGAGAGCGCCTCCCTCCGCATGTTCAGACTGGGCCGAACCGACACTATACGTTCAGCGTCCATCGACTCTGCTAATTTCGTCAAGGCCATGGATGACCCAGCCAAACATAACACAGAGAAGGTGGCACTGCTAGCCAAAGCAATTAAAGCGCACAGAGCTTACACAGacatgGCGATTCGAGGGCAAGCCATCGACAGACATTTGCTCGGCCTGAAATTGCAGGCTATTGAGGACCTGGCCGCCCTGCCAGAGATATTCATGGATACCTCATACGCTGTGGCGCTGCACTTCAACCTTTCCACCAGCCAGGTGCCAGCAAAAACCGACTGTGTGATGTGCTTCGGCCCGGTGGTACCAGACGGTTATGGCGTGTGCTACAACCCCATGGATACCCACATTAACTTTGCAGTCTCTGCTTTCAACAGCTGCCAGGACACTAACGCAGCACGTCTGGCCCAAGCACTAGAGGACGCACTGTTAGACTTGAAGACCCTGCTGGAGCAGACGCCCAAAGccaagctttaaaatgatttttcaattagacttgtttttttttttttttgaacagatcagtcaatgcatttgtgtttacaACGTCATTCAAAGGACAGGAATTTTAAggagatttttatttagaatttgacCAGTCCAGAACCGAGTTGCTTGGACTCTTTTGGACTTTGACGAGCCTTAATAATCCTTAGTAATAATCCTTAacttttatatgtttatgtgcTTTGGTTATAATTGTTCAAATATAACCAGATCAAATAAGCTTTGCTGATTTGAATTTTGAGATTATGCATCATGCATTATGGTGAACacgcagttaaaaaaaaaagctcatgtGATTATTGTATattagttattaaattaaattcagttaaatatggaaaaaaatgtaaatagtgaCATTTGCAAAGCATCGGTTTCTTAGTTCTTTGTACAATGTTGTAAATTTGCACattaacaaaattttaataaatatcaagtctttaaataca
>XM_043240178.1
TGAAGCGGAGCAGCGCAGCAGTGATGGCGCTGCTGGTTGTTCTTTTCGGTGGACTCTGACCGCGCTGATCCTATCTGGCCGTCCCTCCTCTCAGGCCTTGATTTGGGGGCGTTTTAGTGAACTTCAGTTATGTTGGGCATTCTTGCCAGGACGATGGTTAAGGCTTGCATGGTGAAACCCTCCAGCCTGGTAAAGCCAGTGTCAGTGACACGGGTCACTGGTCGTTACTTGGCCCACCAGGAGGGTCTGCCTAAGCTTCCAGTGCCACCGCTGCAGCAAACATGCGAACACTATCTGGCTGCCCTGACGCCCATCGTGGACCCGGAGGAGCTGGATCACACCTGCCAGCTGCTGGAGGAGTTTCAGAAGTCAGGCGGTGTAGGTGAGAGACTACAGAAGGGCCTGGAACAACGAGCCAAGAAGTCGGAGAACTGGCTCTCTGACTGGTGGTTACAAACAGCCTACCTGGACTACCGGATGCCTGTTGTCGTCCATTCAAGTCCTGGGGTTGTCCTTCCCCGGATGGAGTTCAGTGACCGTCAAGGCCAAATGAGTGAAACGTTGCCAGTGGAGTATCTGGGTGGAAAGCCGCTCTGCATGAACCAGTACTATCAGGTGCTCTCGTCTTGCCGGATCCCTGGAACAAAGAGGGACAGTGTGGTCAACTACGCCCGGGACAAGAGACCCCCCACACACATCACTGTAGTGCACAACTTTCAGTTCTTTGTGCTGGATGTGTATAACAGTGACGGCACGCCGCTGACTGTAGACCAGATCTACATCCAGCTGGAAAAGATCTGGAACTCGTCTTTACAGACCAACAAAGAGCCTATAGGCATCCTCACCTCCCACCACCGTAACAGCTGGGGCAAAGCTTACAACAACCTCATTAAGGATAAAACGAACAAAGAGTCTGTGAGAGCCATCCAGAAGAGTATCTTCACAGTCTGCCTGGATGCCCCCATGCCACGTGCTTCTGATGATATGTACCGCACACGCGCCGGAGTTCAGATGCTGCATGGAGGGGGAAGCAGGTGGAACAGCGGAAATCGCTGGTTTGACAAAACACTGCAGTTTATTATTGGAGAGGACGGGACATGCGGGCTGATCTATGAACACGCCCCCGCTGAGGGTCCTCCCATCGTGTCACTCATCGACCATGTGGTGGAATACATGAAGTCGACAGACATGGTCCGGACCCCGATGGTCCCGCTGCGTATGCCACAGAAGCTCCGTTTCAACATCACGCCAGAGATCAAAAAGGACATCGAGGAGGCCAAACAGAACATGAACATAATGGTGCATGACTTGGACGTGAAAGTCAATGTGTTTTCCCATTTTGGCAAAGATTTCCCAAAGTCGCAGAAGATGAGCCCCGATGCCTTTATTCAGGTGGCTCTCCAACTGGCGTACTACAGGATTTACAAGCGCTGTTGTCCTACCTATGAGAGCGCCTCCCTCCGCATGTTCAGACTGGGCCGAACCGACACTATACGTTCAGCGTCCATCGACTCTGCTAATTTCGTCAAGGCCATGGATGACCCAGCCAAACATAACACAGAGAAGGTGGCACTGCTAGCCAAAGCAATTAAAGCGCACAGAGCTTACACAGacatgGCGATTCGAGGGCAAGCCATCGACAGACATTTGCTCGGCCTGAAATTGCAGGCTATTGAGGACCTGGCCGCCCTGCCAGAGATATTCATGGATACCTCATACGCTGTGGCGCTGCACTTCAACCTTTCCACCAGCCAGGTGCCAGCAAAAACCGACTGTGTGATGTGCTTCGGCCCGGTGGTACCAGACGGTTATGGCGTGTGCTACAACCCCATGGATACCCACATTAACTTTGCAGTCTCTGCTTTCAACAGCTGCCAGGACACTAACGCAGCACGTCTGGCCCAAGCACTAGAGGACGCACTGTTAGACTTGAAGACCCTGCTGGAGCAGACGCCCAAAGccaagctttaaaatgatttttcaattagacttgtttttttttttttttgaacagatcagtcaatgcatttgtgtttacaACGTCATTCAAAGGACAGGAATTTTAAggagatttttatttagaatttgacCAGTCCAGAACCGAGTTGCTTGGACTCTTTTGGACTTTGACGAGCCTTAATAATCCTTAGTAATAATCCTTAacttttatatgtttatgtgcTTTGGTTATAATTGTTCAAATATAACCAGATCAAATAAGCTTTGCTGATTTGAATTTTGAGATTATGCATCATGCATTATGGTGAACacgcagttaaaaaaaaaagctcatgtGATTATTGTATattagttattaaattaaattcagttaaatatggaaaaaaatgtaaatagtgaCATTTGCAAAGCATCGGTTTCTTAGTTCTTTGTACAATGTTGTAAATTTGCACattaacaaaattttaataaatatcaagtctttaaataca

Function

symbol description
crata Predicted to enable carnitine O-acetyltransferase activity. Predicted to be involved in carnitine metabolic process, CoA-linked. Predicted to be active in peroxisome. Human ortholog(s) of this gene implicated in neurodegeneration with brain iron accumulation. Orthologous to human CRAT (carnitine O-acetyltransferase).

NR:

description
carnitine O-acetyltransferase

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K00624 E2.3.1.7; carnitine O-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240177.1 True 2504 mRNA 0.48 14 7141629 7148537
XM_043240178.1 False 2450 mRNA 0.48 13 7141629 7148537

Neighbor

gene id symbol gene type direction distance location
fkbp15a LOC107691045 coding downstream 134 7134078 ~ 7141495 (-)
rpl12 rpl12,LOC107587392 coding downstream 17631 7121409 ~ 7123998 (-)
LOC122346223 NA coding downstream 19165 7122339 ~ 7122464 (-)
LOC122346221 NA coding downstream 19780 7121722 ~ 7121849 (-)
ccn1l1 cyr61l1,LOC107723346,LOC107691050,LOC107740969,LOC107693831,LOC107587477 coding downstream 31797 7105673 ~ 7109832 (-)
ier5l ier5l,LOC107723335,LOC107598287,LOC107693861,LOC107691035,LOC107740934,LOC107587377 coding upstream 8957 7157494 ~ 7162360 (-)
ndor1 ndor1,LOC107740959 coding upstream 131908 7280445 ~ 7286031 (-)
c9 c9,LOC107691041 coding upstream 191675 7340212 ~ 7344137 (-)
LOC122345653 myhz2,ns:zf-e68,myhz1.1,myhc4,myhz1.2 coding upstream 270750 7419287 ~ 7429466 (-)
myhz2 myhz2,ns:zf-e68,myhc4,myhz1.1,myhz1.2,LOC107723326 coding upstream 290298 7438835 ~ 7449458 (-)
G33816 NA non-coding downstream 90305 7050977 ~ 7051324 (-)
G33788 NA non-coding downstream 142245 6998360 ~ 6999384 (-)
G33811 NA non-coding downstream 152857 6988026 ~ 6988772 (-)
G33810 kank1b,LOC107730999,LOC107597012,LOC107691025,LOC107587402 non-coding downstream 155410 6986000 ~ 6986219 (-)
G33809 LOC107597012,LOC107691025,LOC107730999,LOC107587402 non-coding downstream 157756 6982426 ~ 6983873 (-)
G33947 NA non-coding upstream 45439 7193976 ~ 7194213 (-)
G33985 LOC107691047,LOC107597997,LOC107723329,LOC107740940,LOC107693835,LOC107587379 non-coding upstream 185877 7334414 ~ 7336545 (-)
G33990 NA non-coding upstream 217713 7366250 ~ 7395232 (-)
LOC122345654 NA non-coding upstream 301840 7450377 ~ 7460111 (-)
LOC122345617 NA non-coding upstream 347077 7495614 ~ 7498788 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 198426 6922846 ~ 6943203 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other downstream 315447 6824171 ~ 6826182 (-)
G33175 NA other downstream 2518571 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 2948548 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 3243051 3878650 ~ 3898578 (-)
G33998 LOC108444092 other upstream 233809 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 558433 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 570028 7718565 ~ 7721758 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other upstream 1012340 8160877 ~ 8164026 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 1263345 8411882 ~ 8414806 (-)

Expression


Co-expression Network