psat1 (psat1,LOC107548526,LOC107556046)


Basic Information

Item Value
gene id psat1
gene name psat1,LOC107548526,LOC107556046
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27415308 ~ 27421004 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240203.1
AGGAAACCGGCACATTAGGTGTAATCATGTGTAAAGAGAATAATAGTGTCAGTCCGAATCGCTCAGAGATAAGTAGGTCAAGTGGAGGAGTTTCTGAAAGATTTAAATCCCGCGACCATAAcagacagttttatttaaaaacatggagAAGAAACAGACGATCAATTTCGGAGCGGGACCGGCTAAACTTCCACAGTCGgtTTTGCTTCAAGCACAGAAGGAGCTGCTGGATTGCAGCGGCACTGGGATAAGCATACTTGAAATGAGCCACAGATCGTCCGATTTCTCCAAGATTATAAACACTGCTGAAAACCTCCTCCGTGAACTTCTGATTGTCCCGGAAAACTATAAGGTACTGTTCCTGCAAGGCGGAGGCTCAGGTCAGTTCAGCGGGGTTCCTCTCAATCTTATTGGTCTGAAGGAGGACAGGTGTGCTGATTATCTGGTCACAGGGACCTGGTCTGCAAAGGCAGCCAAAGAGGCAGAGAAGTATGGAAAAGTGAATGTGATTCATCCAAAGCTGGATAGCTACACCAaaatacCAGACAGTAGCACTTGGTCACTGAATCCTTCAGCGTCTTACGTCTACTACTGCTGCAACGAGACGGTGCACGGCGTGGAGTTCAACTTCATCCCGGACACTAAAGGAGTAGTTCTCGTTAGCGACATGTCCTCCAACTTCCTCTCCAGGCCGGTAGATGTGTCGAAGTTCGGTCTGATATTTGCTGGCGCACAGAAGAATGTTGGGTGTGCTGGTGTGACGGTCGTCATCGTCAGAGAGGATTTGATGGGCAAGGCTTTGAAAGAGTGTCCTATCATATTGGACTATCAGGTGCAGGCTGGCAATAACTCTCTCTACAACACTCCTCCGTGCTTCAGTATTTACATTATGGGATTGGTTCTGGAGTGGATCAAGAACAACGGGGGGGCGGACGCCATGGAACGACTAAACAAGCAGAAGTCTGACATCATCTATGACATCATCAACCGCTCCGATGGATTTTACTCATGCCCGGTTGACATGGCGTGTCGAAGTCGCATGAACGTTCCTTTCCGCGTCGGAAAGAAGGAAGGGGATGAAAGTCTTGAAAAGGCTTTTCTTGATGGTGCTTCTAAACTTGGCATGATCTCACTGAAAGGACACAGGTCTGTGGGAGGCATCCGGGCTTCCCTGTACAATGCAGTGACTGTAGAAGACGTGAAGGCTCTTGGCGCCTACATGGAAGAATTCCTGAAGAACCACTAGTCGCTTAAAACCCTTTTTTGCAAGTAGTAGTTTTTACTTGCATTGAAAAGTGCTATCAGTACCTTTTAAACAGCAGTGACATTTGCAGCATTTAttgcaacaaaaacacaaaacactaaTTCACTTTTCTTTCAGTAGCAGTTGGTCGTCATTGTTGCATAACATTTTAACTAATCTTTTATTCAAATTGTAGTGTGCCTTAATACGTgtaaaatttgtatttgaatTGTTTTCCTAAACATTCCATGTTTtactaatataaatgtgttattagtAGCTGAATGGACTGAATGCTGTGATAAgggcaaaaagaaaataaaatactactaaaatca

Function

symbol description
psat1 Predicted to enable O-phospho-L-serine:2-oxoglutarate aminotransferase activity and pyridoxal phosphate binding activity. Predicted to be involved in L-serine biosynthetic process. Predicted to act upstream of or within cellular amino acid biosynthetic process. Predicted to be active in cytoplasm. Is expressed in immature eye; myotome; nervous system; and pigment cell. Human ortholog(s) of this gene implicated in Neu-Laxova syndrome 2 and PSAT deficiency. Orthologous to human PSAT1 (phosphoserine aminotransferase 1).

NR:

description
phosphoserine aminotransferase

GO:

id name namespace
GO:0006564 L-serine biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004648 O-phospho-L-serine molecular_function

KEGG:

id description
K00831 serC, PSAT1; phosphoserine aminotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240203.1 True 1581 mRNA 0.44 9 27415308 27421004

Neighbor

gene id symbol gene type direction distance location
tut7 zcchc6,LOC107740015,LOC107662083,LOC107702897,LOC107728196,LOC107556044,LOC107556045 coding downstream 309 27399413 ~ 27414999 (-)
LOC122345946 LOC107740017,LOC107662084,LOC107702896,LOC107548503 coding downstream 21681 27391394 ~ 27393627 (-)
smtnb smtn,LOC107739992,LOC107662053,LOC107702966 coding downstream 25310 27343490 ~ 27389998 (-)
inpp5jb LOC107739994,LOC107548522,LOC107702965,LOC107662051,LOC107556011,LOC106585266 coding downstream 80510 27312889 ~ 27334798 (-)
mat2ab mat2ab,LOC107548521,LOC107662054,LOC107739995,LOC107556049,LOC107722750,LOC107702964,LOC106580346 coding downstream 107100 27302259 ~ 27308208 (-)
tmem116 si:ch211-157p22.10,LOC107740032,LOC107548513,LOC107556047,LOC107728188,LOC107662092,LOC107702969 coding upstream 752 27421756 ~ 27431616 (-)
zgc:153044 NA coding upstream 13573 27434577 ~ 27436450 (-)
kiss1rb kiss1rb,LOC107728362,LOC107702921 coding upstream 18077 27439081 ~ 27445470 (-)
mapkapk5 mapkapk5,LOC107702970,LOC107662046,LOC107548527,LOC107556043 coding upstream 24535 27445539 ~ 27457103 (-)
LOC122345447 aldh2.2,aldh2.1,aldh2,LOC107662045,LOC106578507 coding upstream 36786 27457790 ~ 27467414 (-)
G39893 NA non-coding downstream 129114 27285182 ~ 27286194 (-)
G39888 NA non-coding downstream 148079 27265289 ~ 27267229 (-)
G39872 NA non-coding downstream 181146 27232658 ~ 27234162 (-)
G39870 NA non-coding downstream 189746 27224887 ~ 27225562 (-)
G39857 NA non-coding downstream 226086 27188850 ~ 27189222 (-)
G39935 NA non-coding upstream 117484 27538488 ~ 27538861 (-)
G39936 NA non-coding upstream 117936 27538940 ~ 27539327 (-)
G39951 rgs3a,LOC107702900,LOC107728018,LOC107556028,LOC107558862,LOC107693410 non-coding upstream 229446 27650450 ~ 27650827 (-)
G39964 NA non-coding upstream 327456 27748460 ~ 27789829 (-)
G40021 NA non-coding upstream 474639 27895643 ~ 27895961 (-)
isca1 isca1,LOC107702919,LOC107662049 other downstream 16567 27382921 ~ 27398741 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other downstream 307923 27099815 ~ 27107385 (-)
LOC122344921 NA other downstream 1846622 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 2133022 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 2656640 24754202 ~ 24758668 (-)
LOC122344874 NA other upstream 465037 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 834824 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 1902978 29323982 ~ 29326115 (-)
G40182 brinp1,LOC107715673,LOC107674904 other upstream 2039581 29460585 ~ 29490204 (-)
eng LOC107562335,LOC107704777,LOC107741503 other upstream 2193715 29614719 ~ 29655061 (-)

Expression


Co-expression Network