tmem116 (si:ch211-157p22.10,LOC107740032,LOC107548513,LOC107556047,LOC107728188,LOC107662092,LOC107702969)


Basic Information

Item Value
gene id tmem116
gene name si:ch211-157p22.10,LOC107740032,LOC107548513,LOC107556047,LOC107728188,LOC107662092,LOC107702969
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27421756 ~ 27431616 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240204.1
TTGTTACTCCAGCGTCTTCTGAATAAGTCGTTACTTTTTCGGGATGCTCTGCTAGCAATCAGAAAATTGTTGCAACTGTTATTTGGCGTAATTATATCACGGACCTCGAGAGgaatattaacattaatgtcAACTTGATCaatatattgttacattttacaacatGGACGTTTTTGGCCAAAATAAGTCGCAGATGAACACCACCACTCCGACTGAAAACTGGACATCTatATACTCTATAGTCCGATGGATTCAAATAACAATGGCCGTCCTAAGCATTTTAGGTGCTGGCTCCATAATCGTATGTGCCTGTTTAAAAGGACTAGTAAGAAAAAAGAGGTGCAGCCGTTATTCCTGTTAAGTGTAACAGACCTGCTGTTAGCTCTGAGTTGGATGTGTGGAGGTCTTCTCTTCACCGAGTCCTGTAAATCTTACGCCACCTGCTACAATCTTCACATAGTGGAACAGACACTTTACATGGCCTCGTTCTTCTACACGCTGCACTATGTTTTGGTGCTCTACACCGGACTAAATGGGAAGTACAAGAGACTCAACGGTTTCCCAGCCGAGAATCCAGCAAACGCAAGGAGCTGCAGATGTCTCGCTCCTGTATTTTCGTGTCTTTTGCCTTTAATGCTCACAGCGCCCGTGTTTGTCACAGGAAATGTTTTTCAGTGTTACACAAACTTCACCCTGCCCTACAGATGTTTGCTGATGCATACAGGGGCTGTGTATCTCACCTCATctgtaaatacagaaatgactGCATGTAGAGTCATTCAAGACTACTGCATGGCCATTTTCCTCGCTACCTTCTTCGTCACCTTCATTGGGATTACGACTCTCATGTGTAAAGCTCGCTCTCTGTACAAGCGTGTCATCACGTCTCAAGGTTTCTTTGGGGACAATCACTGGGAAACTCTGCGTCTCCTGGAACGCCGTATGCTGCTTTATCCCTCAGCCTTCTTCTTCTGCTGGGGACCAGCAATATTTCTGGCCACTATGATGTTGGTGAAACCGGACATAATAGAAGGAAAGATGGGAGTCGTCCTCTACATCCTGCAGGCCTTCACCTCCGCCTCTCAGGGGCTGTTGAACTGCCTGGTTTACGGCTGGACGCAGCAGCACTTTCGCTCTCTCAGCGGCGGCACCGGCACCGTACGGGACGCCGACACCCAGACCCCCCTGCTGCGCTCCCAGAAACGGAACTACGCTGCTTTGAGATCTGCTGCGTCGCTCGCCAATTTTGTCTGACAGGGAGACGCGCCGAGAAGATGGCGTTCAACCAAAGCGACTGACAGATCGAACCCACGTCTTGGCTGTTGCGAGCGGCGCGCTCTGCTCAGTCGAGCCACCGGACAGTCGGTACAGCGCGCGCTGCGGTGTCGGGAAAAACTGATCTGTGATCGGTCATGTGCGAAACGCGAAAGAAGCCGTTTGTTTTGCTGCAGCGCCGAAAAGGGGAGCCGGACGTTTGTTTCATCTGCCTCGGTTTTGTTTCGAGAATTTATGCGCCGCACCTGCTGCTAGTTGAGCTGAGCCTCGTGCTTTTTGACACGACGGAGACTTTCAGATCAAGACGCGCTGCTGAGCTGTCGAAAAGGGAAAGACCGAAGGGAGATTACGACCAGAGGGAAATAGCTCTGAAACAGGATCTGAGAGGACAATGCTGCAGCTTTCCATccgcaaaacacacacacacacacacacacacacacacacacacacacacgcatacatacatatacatacatacacatagaGGTATTAATTGGCGCGAAGGAGCGTGAAATAAATCGTTTCCTCTTAATAAACAATACAGCTGCGAGCAGACCTTTCGGCGGGTTTTATGTTTGAAGAACGCAGCTGATGAGAAAGATAAGTTGCAGGAAAAGCACCTTGTCAAGctagcagcaaaaaaaaaaacaaaaaacataaaataagcatttttcgTGAATTGAGgcctttactttttaatatttcgattttttaattctgaacgcttaaaagggattaattcacacaaaaatgaatgtttagaaATGAGTAACTTGTTTCGCGTCATTTCAAACCCATGAAACTTTAGTTTATCTTTGAAGTGAAGATATTCTTAAGGAATCTTGACTGAGTTCTGTCCTGCCACCTTCAGAGTAATCCGGAATAAATCTCATATCGTTTACGTGACCTTTCCGCGGAAGGACAGAAATCTCTTGGGTTTCACTAAAATCTTTATCAGCGTTGCAAAGACGAGCAGAAGTCTTGTGTGTTTAGAGTGACGTGAGGGTGGGCAACTGATGACAGGTTTTTGGGCCAACTATTTAAAATACCTGTGGGGATATCTGTAGTTGGTCAAATGTTGTAGTTACGCGATGTGTCACCAAGCcggcagagggagcccttaccccTGGATGACCTGTGATCActgcctctgctgctacttcctgtttctgGACTATAGATTctgaagcaggcccctcacctgcagctTGCATTGAATATTTGTTTGATTgattgtctgtctgtttctggtTCTCCTAGCGTTTCCCTTgtcatagattctttggttttgaccctgcctgtcttttgatTCTTGGATTgcttgctgcctgacccgacctctgcctgtgtTTTTGgttctgttgttgccttgcctcgcCTCTTATACTCCCGTTTGCCTTCagccaataaaagcctgcgaatGGATCCGCGCGCCTCGGACCCCTCAATCATGACactatgtaaaatatatatttttaataccgGAGCGCAATCCCTGTTACGTTTTTGAACTCCTCGTTCTGTAATTACAAACAGCTGGAAAAGTCATGCTGTAAATGACATTCGTACTGTTTTCCTCTTTTACTTTGGTTTACATTTGTCCCATGACAGAATAAGTATTACTTTAATTCAAgcgttttattacatttcatgcgtgtgtgtacatagtttttatacattaaaaagtgtatgaaacattttattaaaacgttGATAAGTA
>XM_043240205.1
TTTGTTACTCCAGCGTCTTCTGAATAAGTCGTTACTTTTTCGGGATGCTCTGCTAGCAATCAGAAAATTGTTGCAACTGTTATTTGGCGTAATTATATCACGGACCTCGAGAGgaatattaacattaatgtcAACTTGATCaatatattgttacattttacaacatGGACGTTTTTGGCCAAAATAAGTCGCAGATGAACACCACCACTCCGACTGAAAACTGGACATCTatATACTCTATAGTCCGATGGATTCAAATAACAATGGCCGTCCTAAGCATTTTAGGTGCTGGCTCCATAATCGTATGTGCCTGTTTAAAAGGACTAGTAAGAAAAAAGAGCAAACCTCTACTTCAGGTGCAGCCGTTATTCCTGTTAAGTGTAACAGACCTGCTGTTAGCTCTGAGTTGGATGTGTGGAGGTCTTCTCTTCACCGAGTCCTGTAAATCTTACGCCACCTGCTACAATCTTCACATAGTGGAACAGACACTTTACATGGCCTCGTTCTTCTACACGCTGCACTATGTTTTGGTGCTCTACACCGGACTAAATGGGAAGTACAAGAGACTCAACGGTTTCCCAGCCGAGAATCCAGCAAACGCAAGGAGCTGCAGATGTCTCGCTCCTGTATTTTCGTGTCTTTTGCCTTTAATGCTCACAGCGCCCGTGTTTGTCACAGGAAATGTTTTTCAGTGTTACACAAACTTCACCCTGCCCTACAGATGTTTGCTGATGCATACAGGGGCTGTGTATCTCACCTCATctgtaaatacagaaatgactGCATGTAGAGTCATTCAAGACTACTGCATGGCCATTTTCCTCGCTACCTTCTTCGTCACCTTCATTGGGATTACGACTCTCATGTGTAAAGCTCGCTCTCTGTACAAGCGTGTCATCACGTCTCAAGGTTTCTTTGGGGACAATCACTGGGAAACTCTGCGTCTCCTGGAACGCCGTATGCTGCTTTATCCCTCAGCCTTCTTCTTCTGCTGGGGACCAGCAATATTTCTGGCCACTATGATGTTGGTGAAACCGGACATAATAGAAGGAAAGATGGGAGTCGTCCTCTACATCCTGCAGGCCTTCACCTCCGCCTCTCAGGGGCTGTTGAACTGCCTGGTTTACGGCTGGACGCAGCAGCACTTTCGCTCTCTCAGCGGCGGCACCGGCACCGTACGGGACGCCGACACCCAGACCCCCCTGCTGCGCTCCCAGAAACGGAACTACGCTGCTTTGAGATCTGCTGCGTCGCTCGCCAATTTTGTCTGACAGGGAGACGCGCCGAGAAGATGGCGTTCAACCAAAGCGACTGACAGATCGAACCCACGTCTTGGCTGTTGCGAGCGGCGCGCTCTGCTCAGTCGAGCCACCGGACAGTCGGTACAGCGCGCGCTGCGGTGTCGGGAAAAACTGATCTGTGATCGGTCATGTGCGAAACGCGAAAGAAGCCGTTTGTTTTGCTGCAGCGCCGAAAAGGGGAGCCGGACGTTTGTTTCATCTGCCTCGGTTTTGTTTCGAGAATTTATGCGCCGCACCTGCTGCTAGTTGAGCTGAGCCTCGTGCTTTTTGACACGACGGAGACTTTCAGATCAAGACGCGCTGCTGAGCTGTCGAAAAGGGAAAGACCGAAGGGAGATTACGACCAGAGGGAAATAGCTCTGAAACAGGATCTGAGAGGACAATGCTGCAGCTTTCCATccgcaaaacacacacacacacacacacacacacacacacacacacacacgcatacatacatatacatacatacacatagaGGTATTAATTGGCGCGAAGGAGCGTGAAATAAATCGTTTCCTCTTAATAAACAATACAGCTGCGAGCAGACCTTTCGGCGGGTTTTATGTTTGAAGAACGCAGCTGATGAGAAAGATAAGTTGCAGGAAAAGCACCTTGTCAAGctagcagcaaaaaaaaaaacaaaaaacataaaataagcatttttcgTGAATTGAGgcctttactttttaatatttcgattttttaattctgaacgcttaaaagggattaattcacacaaaaatgaatgtttagaaATGAGTAACTTGTTTCGCGTCATTTCAAACCCATGAAACTTTAGTTTATCTTTGAAGTGAAGATATTCTTAAGGAATCTTGACTGAGTTCTGTCCTGCCACCTTCAGAGTAATCCGGAATAAATCTCATATCGTTTACGTGACCTTTCCGCGGAAGGACAGAAATCTCTTGGGTTTCACTAAAATCTTTATCAGCGTTGCAAAGACGAGCAGAAGTCTTGTGTGTTTAGAGTGACGTGAGGGTGGGCAACTGATGACAGGTTTTTGGGCCAACTATTTAAAATACCTGTGGGGATATCTGTAGTTGGTCAAATGTTGTAGTTACGCGATGTGTCACCAAGCcggcagagggagcccttaccccTGGATGACCTGTGATCActgcctctgctgctacttcctgtttctgGACTATAGATTctgaagcaggcccctcacctgcagctTGCATTGAATATTTGTTTGATTgattgtctgtctgtttctggtTCTCCTAGCGTTTCCCTTgtcatagattctttggttttgaccctgcctgtcttttgatTCTTGGATTgcttgctgcctgacccgacctctgcctgtgtTTTTGgttctgttgttgccttgcctcgcCTCTTATACTCCCGTTTGCCTTCagccaataaaagcctgcgaatGGATCCGCGCGCCTCGGACCCCTCAATCATGACactatgtaaaatatatatttttaataccgGAGCGCAATCCCTGTTACGTTTTTGAACTCCTCGTTCTGTAATTACAAACAGCTGGAAAAGTCATGCTGTAAATGACATTCGTACTGTTTTCCTCTTTTACTTTGGTTTACATTTGTCCCATGACAGAATAAGTATTACTTTAATTCAAgcgttttattacatttcatgcgtgtgtgtacatagtttttatacattaaaaagtgtatgaaacattttattaaaacgttGATAAGTA

Function

symbol description
si:ch211-157p22.10 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM116 (transmembrane protein 116).

NR:

description
PREDICTED: transmembrane protein 116

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240204.1 False 2998 mRNA 0.45 11 27421756 27431615
XM_043240205.1 True 3015 mRNA 0.45 11 27421756 27431616

Neighbor

gene id symbol gene type direction distance location
psat1 psat1,LOC107548526,LOC107556046 coding downstream 752 27415308 ~ 27421004 (-)
tut7 zcchc6,LOC107740015,LOC107662083,LOC107702897,LOC107728196,LOC107556044,LOC107556045 coding downstream 6757 27399413 ~ 27414999 (-)
LOC122345946 LOC107740017,LOC107662084,LOC107702896,LOC107548503 coding downstream 28129 27391394 ~ 27393627 (-)
smtnb smtn,LOC107739992,LOC107662053,LOC107702966 coding downstream 31758 27343490 ~ 27389998 (-)
inpp5jb LOC107739994,LOC107548522,LOC107702965,LOC107662051,LOC107556011,LOC106585266 coding downstream 86958 27312889 ~ 27334798 (-)
zgc:153044 NA coding upstream 2961 27434577 ~ 27436450 (-)
kiss1rb kiss1rb,LOC107728362,LOC107702921 coding upstream 7465 27439081 ~ 27445470 (-)
mapkapk5 mapkapk5,LOC107702970,LOC107662046,LOC107548527,LOC107556043 coding upstream 13923 27445539 ~ 27457103 (-)
LOC122345447 aldh2.2,aldh2.1,aldh2,LOC107662045,LOC106578507 coding upstream 26174 27457790 ~ 27467414 (-)
eif2b1 eif2b1,LOC107675950,LOC107728130,LOC107702972 coding upstream 79257 27510873 ~ 27514550 (-)
G39893 NA non-coding downstream 135562 27285182 ~ 27286194 (-)
G39888 NA non-coding downstream 154527 27265289 ~ 27267229 (-)
G39872 NA non-coding downstream 187594 27232658 ~ 27234162 (-)
G39870 NA non-coding downstream 196194 27224887 ~ 27225562 (-)
G39857 NA non-coding downstream 232534 27188850 ~ 27189222 (-)
G39935 NA non-coding upstream 106872 27538488 ~ 27538861 (-)
G39936 NA non-coding upstream 107324 27538940 ~ 27539327 (-)
G39951 rgs3a,LOC107702900,LOC107728018,LOC107556028,LOC107558862,LOC107693410 non-coding upstream 218834 27650450 ~ 27650827 (-)
G39964 NA non-coding upstream 316844 27748460 ~ 27789829 (-)
G40021 NA non-coding upstream 464027 27895643 ~ 27895961 (-)
isca1 isca1,LOC107702919,LOC107662049 other downstream 23015 27382921 ~ 27398741 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other downstream 314371 27099815 ~ 27107385 (-)
LOC122344921 NA other downstream 1853070 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 2139470 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 2663088 24754202 ~ 24758668 (-)
LOC122344874 NA other upstream 454425 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 824212 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 1892366 29323982 ~ 29326115 (-)
G40182 brinp1,LOC107715673,LOC107674904 other upstream 2028969 29460585 ~ 29490204 (-)
eng LOC107562335,LOC107704777,LOC107741503 other upstream 2183103 29614719 ~ 29655061 (-)

Expression


Co-expression Network