LOC122345769 (zmat4a,zmat4,LOC107594996,LOC107587306)


Basic Information

Item Value
gene id LOC122345769
gene name zmat4a,zmat4,LOC107594996,LOC107587306
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16400432 ~ 16409920 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240214.1
GCTGGAGATGTTGAGAGTTCAATGATAGTTCGCAGGAGAAGATCTTGCAGTAATGAGTCTTTGTAGGTAAATCGGATAGCACACACCTCAGCACACAAAGGCACTGGAGATACTTGGAGGACTGGAAGGAACTCAGGAGACACTTGGAGAACTAAAAGGAACACATGAGGTAAGTAAAAAGGTAGGTAATATAAGCACAGTGAGTTCTCTTCATAGGTATGAGATCGGACAAATGCCGAGGGTGAGATGTGCTTTTATACTTGGTCTTGATTGGATGAGTGGATTAGTGACAGGTGCAGGTGATCGTTGTGATTGGTTGGTGACTGAGTCTGGCCGATTCATGACAATACCCCCTCCTCCACAGTTCGCTCCTGAGGACCCCTGCATCGTGGTGACCTACTTCTGCCCTGAGGTGCAGGAACATCGGATGGTTGCCTAGACCAGGTGGAGACCAGTGGAGGCTGGTAACTGAGTGGGAGGGAGTCAAGTGGATGGATGGCGTAAGGAGTTCTGAACCCAGAAACTGGTTCCAGGAATCCTGGTGGCCATGGCAGGAGGTTTGTAGGAAACACCCCACCTCTTGTATCCTTCCTTCTGTTTATCCATTTGCCTGAGGGTGATATCCAGAGGTGAGGCCAATGGTCACACTTAGAAGCTTGAAGAATGCATTCCATACTCTGGAGATAAACTGTAGTCCACGATCTGAACCAATGTCTTTGGGAATGCCGCAGAATTGGATAGGTGTAACCAGAGACGATTCGGCACAGGCAAAGGGAGTAGCTTGCCAGTTAGTAGATGAGGAGGGCTTTTTGTCTGGGCATCCCTGAACAAACCTTCCTACATCCCTTGCCAAATTTGGCCACCAGCAGAGAGAGGGTTGTGTTCGCCCCTGGGTGGCCAGTGCCTAGAGAGGAGTGAACAGAGTGGATTAGTATAGTGGGTTGGGAACATGGAACGTATTATCGCTGACTTAGAGGCGACTGAAGAAGTGGTCCATTGGATGGGAGTGACAATCATTTCTGATGGGATGATGGGTTCAGGGTCTTTATCATTCTCCATACAATTGTGAATCTGTGACAAGGTGTCCGCTTTCACATTCCTAGGACCTGGACGatatgaaatggaaaaatttAATCTGGTGAAGGAGAGAGTCTACTTTGACCACAAAAGGAAGATCAGGATCAGGAAGAACCAGGAGAGGTGCACTGGTAAATGCTTTCTTGAGGGTGGTGTAAGCTTTGCCTTGTCCATTTGACACCAGAATGGGAGATGTTGTACTGGAGGAGCTGCACTGTAGGTTGGTGGAAGGTGCATTTCTAAGCCTTGAGGTAAAGCTGGTGTTCTCTCTGCCTTTGAAGGACCGCCACAATGTGGTGGCGATGTTCAGCCATACTTCGGGAATAAATGAGGATGTCGTCGATTTATACAATGACAAATCTGTGGAGGAAATCCCAGAGTACCTCATGCATAAAGTCCTGGAACACAGAGGGGGGCATTGACGAGTCTATAAGGCATGACAAGATCACAAAGGCAGTCTTCCAATTGTCCCTCCTCACATATCCAGATGAGGTTATATGCACTGTCTAGCTTAGTAAAGATGGATGCTGGGACAAGGGGAAAGGGATTCCTTTTTTGAGCAGAACACGTCCCTGAAGGGGGCATACTAGGTGGGTATATCCATGAATCTCTTTTCTACTGGACTTTCAATGATTGTAGAATTCACTTGCAGTGGTTTAGAAGAAGAACATGGAGGGGACGGTATATTCGAGAAACAGTCCTTGCCCCACTTAAAGACTTTCAGACAACAGGTAAgataaaatatgtttgtttatttacaacacTTTGTAAGCAGATGTCAGTCAAGCCGGAGATGTTTCAGGTAAGTTAAGAGTTCAATGAGAGTTTCAGCGGAGGAGATCTTGCAGTAATGAGTCTTTGTATCTTTGTAGGTAAACCAGATAGCACACACCTCAGCACACAAAGACACTGGAGATACTTGGAGGACTGGAAGGAACACAGGAGACACTTGGAGAACTTGGATGAACACAGGAGaGGTGACACCCAGTCCAGTGAAAACACCCTCCTCAGAAACCTCACCTGTTAGCTCGACCCGTCAGCACCGGGATTCTGATCGCTACTGTCAGCTCTGTAATGCTTGGTTCAACAATCCTGGAATGGCTCAGCAACACTACGACGGCAAAAAGCACAAGAAAAATGCAGCACGAGCAGACCTACTGGAACAACTAGGGAAAACTTTAGACATGGGAGAGATGAAAGGTTTAAAACGCTGCTACACATGCGACGTCTGCAGTGTCACGCTGAATTCAGTGGCACAGTATCATGCACACCTGCAGGGCTCCAAGCACCAAAACAAGTAAGTGTCAACATGCACCTCATg

Function

symbol description
zmat4a Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleus. Is expressed in habenula; hindbrain; and retinal inner nuclear layer. Orthologous to human ZMAT4 (zinc finger matrin-type 4).
zmat4 Enables identical protein binding activity. Predicted to be located in nucleus.

NR:

description
zinc finger matrin-type protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240214.1 True 2398 mRNA 0.47 3 16400432 16409920

Neighbor

gene id symbol gene type direction distance location
LOC122345865 si:dkey-114c15.7,LOC107597238,LOC107672487,LOC107733230,LOC107592265,LOC107748635 coding upstream 10788 16379355 ~ 16389644 (+)
tmem8b tmem8b,si:dkey-84j12.1,LOC107553610 coding upstream 148660 16144894 ~ 16251772 (+)
LOC122345915 hspb11,zgc:158640,LOC107746844,LOC107681463,LOC107719933,LOC107660270 coding upstream 311519 16087941 ~ 16088913 (+)
nos2a nos2a,LOC107553584,LOC107719931 coding upstream 316677 16076241 ~ 16083755 (+)
si:dkey-40c11.2 LOC107680639,LOC107552538,LOC107746841 coding upstream 386017 15985786 ~ 16014415 (+)
LOC122346216 fam101a,LOC107687957,LOC107553832,LOC107684501,LOC107576363 coding downstream 133915 16543835 ~ 16554564 (+)
edil3a edil3a,edil3,LOC107685241,LOC107669516 coding downstream 625875 17035795 ~ 17162890 (+)
LOC122344732 LOC107570126,LOC107742021,LOC107694705,LOC107675326,LOC107715436,LOC107574130 coding downstream 819474 17229394 ~ 17253899 (+)
LOC122344734 col27a1b,LOC107720245,LOC107672548,LOC107587699,LOC107699687,LOC107731038,LOC107720196,LOC107552608 coding downstream 850232 17260152 ~ 17316269 (+)
LOC122345236 sh2d3c,LOC107731039 coding downstream 909940 17319860 ~ 17328414 (+)
G37155 NA non-coding upstream 303427 16095985 ~ 16097005 (+)
G37123 NA non-coding upstream 346424 16053032 ~ 16054008 (+)
G37047 NA non-coding upstream 481147 15918506 ~ 15919285 (+)
G37038 NA non-coding upstream 540329 15859759 ~ 15860103 (+)
G36993 NA non-coding upstream 576681 15821892 ~ 15823751 (+)
G37260 NA non-coding downstream 250601 16660521 ~ 16660743 (+)
G37286 NA non-coding downstream 377910 16787830 ~ 16812417 (+)
G37291 NA non-coding downstream 417205 16827125 ~ 16827476 (+)
G37308 NA non-coding downstream 479277 16889197 ~ 16889977 (+)
G37330 NA non-coding downstream 940671 17350591 ~ 17350922 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 4870 16391797 ~ 16395562 (+)
G36640 NA other upstream 1679945 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 1747521 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 2050441 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 2062667 14333023 ~ 14337765 (+)
G37227 NA other downstream 64788 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 76700 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 954929 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 1116104 17526024 ~ 17527444 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other downstream 2432899 18842819 ~ 18847674 (+)

Expression


Co-expression Network