ppm1f (ppm1f,LOC107599133,LOC107741489,LOC107755823,LOC107668739,LOC107704983)


Basic Information

Item Value
gene id ppm1f
gene name ppm1f,LOC107599133,LOC107741489,LOC107755823,LOC107668739,LOC107704983
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1721233 ~ 1732137 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240215.1
TGTCCGTCACAGCGACTTCCGCAGACGGATTGGCTTTTGTTGTGTAGTGACCGAAAGGGCGTGCGTTCAGTGCGCGAGCGCTTCAAACCGCACTCGGCAGGGTAAAAAGGGAGTGTTGGCGCATAAAGCGAAGCCAACCATCCGTAAGaTTCGTACCTGAAGTTTCCTTTCCACAAAAGGTTTCAAAACCACGCTCAGAATGAGTTGCACGGAGCAGGGCGACGCTGGGAAGTTTCTAGAGAGGTTTCTGGACGAGTTTCCAGACCCGCTTGGCTCAGAGGACCCGCTTCCCGTCAGTCCACTTAGCCGCAAAGTCACTATGCAGGAGGTGAAGGGAGAGAGTCTGGATCTGGGCCTGCGACTGCTCTCAGCCAGaaaagccCCATCCTGGCTGGGTGCGGAGATATGCAATGCTGCTGTCACTGAATTGCTTAAAGATGACCTTTCTCCTCACCACTGCCCCAAAGATCCTGAACAGCAACCGGAGGATGAACAGGAAGTCGTTTTGTTACAGTCTGAGCCATTGCAGCGcctctttattaataaattgagAGAGGTGTGTTTGGCCTGGCAGAAACAGCTGCCCAGTCCTGGGTCCTCATCATCTCGGACACACAGCTGCTCCGTGCACGCCATTCGAAACACTCGCAGGAAGATGGAGGACCGTCACATCATCCTGAGAGAGTTCAACCAGCTACTGGGACTGGAGGATGGTGTAGATCGAGAGTATTACGCTGTGTTTGATGGACATGGAGGGGTGGACGCTGCCACATACTCTGCCACTCACCTGCATGTCATACTGAGCCAGCAGGAGGCGCTAAAGAGCGATGCTGCCACAGCCTTCAAAAGCACCTTCACACAAACAGATGACATGTTCAAAGTCAAAGCTAAGAGAGAGCGTCTGCGCAGCGGCAGCACTGGTGTGGCAGTCTTACTGACCTCCGATCGCCTGACCGTCTCCTGGCTGGGTGACTCTCAAGCTATGCTGGTTCGACAGGGAGAGCCGGTGACCCTGATGGACCCACACAAACCTGAGAGAGAGGATGAGAAGAAAAGAATCGAGGATCTGGGTGGATGCATCGCTTTCATGGGTTGCTGGCGGGTAAATGGGACCTACGCCGTTTCTAGAGCAATAGGTGATTTTGATCAGAAGCCGTACGTCTCTAACGAAGCTGATTGCTCCTCGATACATCTGAATGGAGATGAAGATTACATTCTGCTCGCTTGTGACGGCTTCTTTGACGTGGTTCGGTCTGGGGACGTCCCGGGGCTAGTCCTGGAGGCTCTGAGGGAGACCGGGGGCCCGGGGGACGATGTGGCCCAGTCTCTGGTGGCCCATGCGAAAGCTGCTGGATCCAGTGATAACATCACAGTTCTCCTGGTGTTCCTCAAGGATCCGCAGCAACTTCTGACCTCCGAGATGAGCTCCAGAGGTCCTGGCGGAGCTACGGCTGCAGGGATGTGAAAGAATACTCAATTATAGAAGCAAATCAGAAGACCGGTAGCAACCCATGGTCTTTTTCAGCATCTGGAATGATAGTTTTAAAGAGTTGTTGCAATTGAAAAGTATATGCGATTGCTGAGGTCATCCAAAACGAGTCCAGTCATGCGTTCGGAAGAAAGCATCGAACGCAGGTAAAAGGCGTTTCCTCgcttttttttccatgaatgtCTGATGCCTGGTCATTTAACTCTTTCCGTTGCTGCATTTGAACTTgccttcatttttaaacatgtttccATTTTTAACCATTTGCCTTGTTTTTACCagcttatatttacatttactggTGCTTGAAGGTATAGTACACCtaaaaataattctgtcatcaattagtcaccctcgtgtcattccacATGGAACttaaaggaagatattttgttgGTAGAGGAATGTACAATATTTCCATTGAATGGACAAAATAGTGCAACGGAAGTCAATAAGAACCAAATGGGTTTAAATgtacagttcacccaaaaataaaaactcatttactTGCATCACCCTCaggtagttccaaatctgtatgaacacaaaggaagatgttttggggaaatatgttttagtttagGCTGTTTtagtcaccattgacttccatactatggggaaaaaaaatactatggaagtcattgGTGACCTAAAACAGCCCGatcacaaactttcttcaaaatatcttcctttgtgttcggcagaacaaaaacattcatacagATTTAGAACATACagatttttgggagaactatttctttaattaacaACACGCTTCAAAACATGCTTCacatttaacagaaaacaagaaatgcatgcaggtttgaaacaacacaagggtgaggaattaatgacagaatgtgcttttttttggatgggctatttctttaatatctcatAAACGATGTAATACCTTAGAGATGCACGTAAGCAAACGTGATCATTTTTTCGGAGCATATTTTGATGGTTGCGCTCTCTATTTGATACGACTGTTACAGTGGAGAGAAAATCGATGTGAATAGTCTTAACACATACAGTATTGCGTGGCATTTCAGACCACACCGACTTCGATAATGGAATAATAACTGACCATAAGGCCTTCAGCTCAACAGACGTACTAATCCAGTGTTGTAGGTGGTTAGTATTTTCAAGactgttatttatttgacaaataagTATTTATGGCTCTACTGTACTGTGTAAACGCGTTCTTTTATGTGCCAAAACTGTATTTACAAGTCTGACTTTGCCAAGATCACCTTTCTGTTGCTCACGGCTTTTCACAAAGCAGTTTCCCGAAATATACAGTAAaccttta

Function

symbol description
ppm1f Enables phosphoprotein phosphatase activity. Acts upstream of or within protein dephosphorylation. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including eye; fin; heart; skeletal muscle; and testis. Orthologous to human PPM1F (protein phosphatase, Mg2+/Mn2+ dependent 1F).

NR:

description
protein phosphatase 1F

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17502 PPM1F, POPX2; protein phosphatase 1F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240215.1 True 2807 mRNA 0.46 8 1721233 1732137

Neighbor

gene id symbol gene type direction distance location
mapk1 mapk1,LOC107741490,LOC107704570,LOC107599610,LOC107386038 coding downstream 3332 1696432 ~ 1717901 (-)
p2rx2 p2rx2,LOC107704555,LOC108431687 coding downstream 118173 1597847 ~ 1603060 (-)
lztr1 lztr1,LOC107716547,LOC107704547,LOC107755835,LOC107668721 coding downstream 141605 1572148 ~ 1579628 (-)
cldn26 LOC107716548,LOC107653273,LOC107755822,LOC107599648,LOC107668741,LOC107576154 coding downstream 151167 1569404 ~ 1570066 (-)
LOC122344835 aifm3,LOC107668732,LOC107716541,LOC107599649,LOC107755821,LOC107653263,LOC107599166 coding downstream 156687 1543418 ~ 1564546 (-)
top3b top3b,LOC107705001 coding upstream 962 1733099 ~ 1745696 (-)
sdf2l1 sdf2l1,LOC107704634,LOC107755844,LOC107668746 coding upstream 37299 1769436 ~ 1771792 (-)
ube2l3b ube2l3,ube2l3b,ube2l3a,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding upstream 48028 1780165 ~ 1785389 (-)
LOC122344761 ngly1,LOC107748685,LOC107696895,LOC107739561,LOC107688325,LOC107579448 coding upstream 161643 1893780 ~ 1898590 (-)
LOC122344882 gnrhr4,LOC107715601,LOC107575089,LOC107690392,LOC107715190,LOC107691141 coding upstream 320568 2052705 ~ 2058733 (-)
G32572 NA non-coding downstream 54327 1666698 ~ 1666906 (-)
G32486 pes,LOC107704970,LOC107741508 non-coding downstream 113486 1606425 ~ 1607747 (-)
G32462 NA non-coding downstream 154084 1541226 ~ 1567149 (-)
G32463 LOC107599159 non-coding downstream 181865 1537398 ~ 1539368 (-)
G32440 NA non-coding downstream 207921 1513045 ~ 1513312 (-)
G32579 NA non-coding upstream 27507 1759644 ~ 1759857 (-)
G32581 NA non-coding upstream 30341 1762478 ~ 1762829 (-)
G32583 NA non-coding upstream 31138 1763275 ~ 1763648 (-)
G32586 NA non-coding upstream 34461 1766598 ~ 1766880 (-)
G32596 LOC107704652,LOC107741512 non-coding upstream 62367 1794504 ~ 1796557 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other downstream 26947 1673024 ~ 1694286 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other downstream 366819 1342606 ~ 1354414 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other downstream 385046 1312604 ~ 1336187 (-)
wdr31 wdr31,si:ch73-266o15.4,LOC107653158,LOC107667323,LOC107751417 other downstream 1090107 622514 ~ 631126 (-)
ddr2l ddr2l,LOC107704361,LOC107725118,LOC107550294,LOC107723312,LOC107667359,LOC108444179 other downstream 1138138 556654 ~ 583095 (-)
G32676 NA other upstream 234500 1966637 ~ 1967748 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other upstream 287959 2020096 ~ 2022922 (-)
G32857 NA other upstream 764367 2496504 ~ 2554146 (-)
snrnp27 snrnp27 other upstream 848411 2580548 ~ 2585452 (-)
add2 add2,LOC107668755 other upstream 854450 2586587 ~ 2605917 (-)

Expression


Co-expression Network