capns1a (capns1a,LOC107655908,LOC107700232,LOC107548486,LOC107746417)


Basic Information

Item Value
gene id capns1a
gene name capns1a,LOC107655908,LOC107700232,LOC107548486,LOC107746417
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13447355 ~ 13454224 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240234.1
TTCGTGTGTGTTATGGGGGTTGGTGGTTTCGCTCTGGCTTTACGTCGTTTGCGTAACTTATTTTGGAATATATCCTGTCAGAGGCGCACTGCCCTGCCGTGTGACGGACGACCGTTTACATTGCCTTCCGCAGCTAGCTGGTAATAACCGAACCATTTGTGCCACAAGATGTTTTTTGCCCAGCAACTTATTGGAGGCATTATTGATGTGGTCAGCAATATCGACCCTGGCAAGTTCAAGCCTTCAGATCCTCCTCCACCCCGCAGACCGTTGGCTTACGCTGAGGCCAATGAGTCTGAAGAAGAGAGGCAGTTCCGCAGAGTGTTCCAGCAGCTCGCTGGCGAGGACATGGAAGTAAGCCCCAATGAACTGATGAATATCCTCAACAAAATCATTTCCAAACATGGTGATCTGAAGACGGATGGCTTTACCATTGAGTCGTGCAGAAGTATGGTGGCTGTCATGGATAGTGACAGCACAGGGAAACTGGGCTTCCATGAGTTTAAGCACCTCTGGAACAACATCAAAAAATGGCAGGGAGTTTATAAGAGTTACGACAGGGATCGCTCAGGAACTATTGGAGCAGATGAGCTTCCAGCTGCCTTCAGAGCTGCAGGTTTCCCTTTGAACGATCAGCTCTTTCAGATGATTATTCGCCGGTATAGCGATGAGACCGGAAACATGGACTTTGACAATTACATTGGTTGCCTTGTGAGACTTGATGCCATGTGCCGTGCCTTCAAGACTCTTGACAAAGACAATGATGGCACAATCAAGGTCAATGTTCAGGAGTGGCTGCAGCTGACAATGTACTCTTGAGCGATGTGAAGCTCTGCAATCAGCTCAGTGCTTATATGCAATAATGACTTATAGCTTTACACTGTTCTCTCGCTCTCTTGTTTTTCAATATAGCACTGATTCCAGAGAAACACCAGCATGGAGCTGGTCAACCACTGGGGTTATGTGGGTCATTTCACTATGCcattttttccctttgttttattattacaatttttttttttttaaagtgcgtTGAAAGtgagaataaagaaaatgacaaaagtgtCACAAATATGCAAAACTGTATTACATATTCATGTCCGTTGGTGCCATTTGTGCATGAAGACAATGAGGAATAGAAGTGGTAAAAAGAAAAGccacaaaatcataaaaatttgGTGCCAAAtgcaattttactttaaataaaacgtaTAAAGTGA

Function

symbol description
capns1a Predicted to enable calcium ion binding activity. Is expressed in several structures, including EVL; digestive system; epidermis; pectoral fin bud; and pronephros. Orthologous to several human genes including CAPNS1 (calpain small subunit 1).

NR:

description
PREDICTED: calpain small subunit 1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08583 CAPNS1, CAPN4; calpain, small subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240234.1 True 1220 mRNA 0.44 11 13447355 13454224

Neighbor

gene id symbol gene type direction distance location
alkbh6 LOC107746424,LOC107548452,LOC107700897,LOC107655907,LOC107757515,LOC107596150 coding upstream 155 13441448 ~ 13447200 (+)
nova1 nova1,LOC107757545,LOC107655909,LOC107700904,LOC107746355,LOC107548487,LOC103377877 coding upstream 9419 13419356 ~ 13437936 (+)
micu2 LOC107700905,LOC107746354,LOC107596152,LOC107655910,LOC107757544,LOC107548488 coding upstream 28387 13412620 ~ 13418968 (+)
igbp1 LOC107746347,LOC107700909,LOC107548490,LOC107655913,LOC107757539 coding upstream 59400 13383212 ~ 13387955 (+)
wnt11f2 wnt11,LOC107746349,LOC107548453,LOC107655896,LOC107596154,LOC107757514,LOC107700898 coding upstream 67587 13376537 ~ 13379768 (+)
zgc:153990 LOC107548484,LOC107746356,LOC107700225,LOC107655905,LOC107757517,LOC107596149 coding downstream 282 13454506 ~ 13460110 (+)
dlb dlb,LOC107746357,LOC107596148,LOC107683914,LOC108260005,LOC108444019 coding downstream 11308 13465532 ~ 13470881 (+)
ppp1r14aa ppp1r14aa,LOC107596215,LOC107746358,LOC107548483,LOC107655902,LOC107757548 coding downstream 16776 13471000 ~ 13475009 (+)
exoc3l2a LOC107746360,LOC107700233,LOC107548482,LOC107757547,LOC107596146,LOC107700224 coding downstream 21954 13476178 ~ 13487943 (+)
mark4a mark4a,LOC107746361,LOC107596145,LOC107700234,LOC105006905,LOC107693438,LOC108444027 coding downstream 43960 13498184 ~ 13517184 (+)
G36109 NA non-coding upstream 122972 13324033 ~ 13324383 (+)
LOC122345423 NA non-coding upstream 134703 13299755 ~ 13312652 (+)
G36062 NA non-coding upstream 338502 13108632 ~ 13108853 (+)
G35905 NA non-coding upstream 561421 12885331 ~ 12885934 (+)
G35904 NA non-coding upstream 562071 12885005 ~ 12885284 (+)
G36140 NA non-coding downstream 65749 13519973 ~ 13521608 (+)
G36141 NA non-coding downstream 112753 13566977 ~ 13580798 (+)
G36168 NA non-coding downstream 193702 13647926 ~ 13648538 (+)
G36191 NA non-coding downstream 266561 13720785 ~ 13721566 (+)
G36198 NA non-coding downstream 277745 13731969 ~ 13732456 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 640004 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 742110 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 918565 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1191683 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1504245 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 529873 13984097 ~ 13985706 (+)
G36495 NA other downstream 836196 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 845819 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 878799 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 893338 14347562 ~ 14349991 (+)

Expression


Co-expression Network