pdlim5a (pdlim5a,LOC107725153,LOC107704103,LOC107725180,LOC107594568,LOC107564363)


Basic Information

Item Value
gene id pdlim5a
gene name pdlim5a,LOC107725153,LOC107704103,LOC107725180,LOC107594568,LOC107564363
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 32684513 ~ 32719171 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240243.1
TAGATGGGTATAAATGGACAATCTGCTGTCTGTGTGGATCATTTGGTTTCAGACCTTTCGACCCACATTGCAGAGGAGTTTGTGTTTCCTTTTGTCAGGGTTGTTGCTTTCTGAAGgaCGTTTGGCAGCCTCTGCGGGTGTGTTTTATATCAGACAGCTATGAGTGGTAAATACAGTGTGGTGTTACAGGGTCCGGCCCCGTGGGGCTTCAGACTGCAGGGGGGGAAAGACTTCAACATGCCTCTCTCCATTTCACGGCTGTCGGACGGAGGGAAGGCTGCTAAAGCGGGAGTGGCTGTGGGAGATCTGGTCCTGTCCATCGACGGCATCGGCACTGACGGCATGAACCACCTCGAGGCTCAGAACAAGATCAAATCCAGCACAGACAAACTCAGCCTCTCTTTACAGAAAGCTTCCAGTCTTCCAAAACCAGATGTGGCACCGAAGGATTATTCTGTGGAAATCATCAAACCTGTTCCCATGACAACCTCCATTCCATCTTCTTCTGACATCACAAACTCCACCCACATCACTTCATCTTCCAATAGGAGCGCTCGTCCGTTTGGAGGGGTGGGGTCACCGCACATAGCCTCCATTCCGTCCGCCGCGTCTGCTTTTGCACCCGCCTCCTCAGCTCAAAACCCTAATACACAAGCTCCGCCCACTCCTACTGATCATCTACCGGCGGTGCCCCGCCCTTCAGTGTATAACACGCCCATCAATCTCTACTCCAATGAGAATGCCTGTGAGGTTGCCATGGGCCAGAGGCGGGGCCTGCTGGAAAGCCAGGGCGAAAGCGCTCAGCTGAATGGAAAACCCGCAGCGAACAGAATTCCTCGTAAACCCATCACAGAAACGGACATTGAGTTTTATCATGTCCCGACTCACGGTGACGCCAGCAGGAAACGCATCATGGAGGACACAGAGGACTCGCCGCGGACAGGAACTTCACAATCCCGCTCGTTCCGTATCCTGGCCCAAATCACCGGCACTGAATCTGAATTCGATCGCTCACAGGAGGCCGAGTCGGCAAAGAAGACCACAAATGAGGAGCTGGATGAATCTCAGCCCAGCACCCATGTCACCTGTCCCGTGAAGACCATGATGAAAGCCCCGGGAACACCCGTCAGAAGCACAGCAGGTCTCATCACTCCCACTTTTGGCGTCGTGAGCAGCACTACTCCTTTAGGCCCCGCCTTGGATCGTCCCACGCGCCCGCACCCCAAAGACGAAGCCTCATTGGTCCAGATGGCAGAACACATCCCTGCTGGAACACGCACTCCTGTGTGCGCTCACTGCGACACGATCATCAGggggCCGTTCCTGATGGCGATGGGGAAATCGTGGCACCCGGAGGAGTTCACGTGCGCTCACTGCAGTGTTTCTCTGAGCGAGCTGGGGTTTGTGGAGGAACAGGGCTCTGTTTACTGCCAGCACTGCTACGAGGAGTTCTTCGCCCCGACCTGTGCTCGCTGCCAGTACAAAATCCTGGGGGAAGTGATCAGCGCGCTCAAGCAAACCTGGCATGTGTATTGTTTCCTGTGTGCTTCCTGCCAGCAACCGATAAGAAACGATACTTTTCATCTTGAGGATGGAGAGCCGTACTGCGAGAGagATTACTACGGTCTGTTCGGGACGGGCTGCCGCGGTTGTGATTTCCCGATAGAAGCAGGAGACAAGTTCCTGGAGGCCCTGGGCGGCACCTGGCACGACACCTGCTTCGTGTGCTCGGTGTGCAGCGTCAGTCTGGAGGGACAGACCTTCTTCTCCAAAAAAGACAAACCGCTTTGCAAGAAACACGCTCACGCTCTCAAAATATAAGAAAAGCGACTGTTGAAGtattagaaaaaaagttaaagaacACATATTTACAAAGATATGAATGACACGTACTCAAAGGAAAAGCCATTCTGATGTGGTTTGAATGAAGGaactttttcaaaaggtacatgtttgtacc

Function

symbol description
pdlim5a Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in several structures, including cephalic musculature; digestive system; dorsal aorta; nervous system; and notochord. Orthologous to human PDLIM5 (PDZ and LIM domain 5).

NR:

description
PDZ and LIM domain protein 5-like isoform X9

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K19867 PDLIM5_6_7; PDZ and LIM domain protein 5/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240243.1 True 1960 mRNA 0.53 16 32684513 32719171

Neighbor

gene id symbol gene type direction distance location
bmpr1ba bmpr1ba,bmpr1b,LOC107725167,LOC107704129,LOC107594551,LOC107667882,LOC107725174 coding downstream 3039 32638260 ~ 32681474 (-)
LOC122345374 LOC107748054,LOC107557581,LOC107704095,LOC107725138,LOC107594549 coding downstream 219890 32459458 ~ 32464623 (-)
ostf1 ostf1,LOC107704065,LOC107748057,LOC107659617 coding downstream 262915 32416225 ~ 32421598 (-)
LOC122345937 LOC107704040,LOC107557591,LOC107748061,LOC107725130,LOC103139561,LOC102299939,LOC100537556 coding downstream 341769 32315687 ~ 32342744 (-)
zgc:73226 zgc:73226,LOC107704030,LOC107725129,LOC107594543,LOC107557574 coding downstream 374373 32301359 ~ 32310140 (-)
opn4xb opn4xb,LOC107704143,LOC107725176,LOC107667875,LOC107564366 coding upstream 5727 32724898 ~ 32733732 (-)
nipbla nipbla,LOC107667879,LOC107704848,LOC107725079,LOC107594572,LOC107571026 coding upstream 51058 32770229 ~ 32799945 (-)
slc1a3a slc1a3a,LOC107704160,LOC107725163,LOC107594554,LOC107667878,LOC107725178 coding upstream 82847 32802018 ~ 32812625 (-)
G41273 NA non-coding downstream 157444 32513392 ~ 32527069 (-)
G41217 NA non-coding downstream 203800 32480355 ~ 32480713 (-)
G41216 NA non-coding downstream 206673 32477262 ~ 32477840 (-)
G41191 NA non-coding downstream 239232 32444282 ~ 32445281 (-)
G41198 NA non-coding downstream 245368 32438619 ~ 32439145 (-)
G41303 NA non-coding upstream 48015 32767186 ~ 32767409 (-)
LOC122346085 LOC107748069,LOC107679343,LOC107594586 other downstream 369882 32283537 ~ 32314631 (-)
LOC122346090 LOC107704013,LOC107725152,LOC107748063,LOC107654332,LOC107557589,LOC107594564 other downstream 390731 32214031 ~ 32293782 (-)
tnca zmp:0000000846,LOC107715542,LOC107557573,LOC107591511,LOC102306937,LOC107725145 other downstream 510449 32113896 ~ 32174064 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other downstream 961607 31721270 ~ 31722906 (-)
apooa apoo other downstream 972776 31702453 ~ 31711737 (-)
LOC122345737 egflam,LOC107704151,LOC107667876,LOC107725173,LOC107725080,LOC107564362 other upstream 19246 32738417 ~ 32757869 (-)

Expression


Co-expression Network