LOC122345789 (npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224)


Basic Information

Item Value
gene id LOC122345789
gene name npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2717013 ~ 2725424 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240245.1
ATGGAGACGTCGCAGGAGCTTTTTTTCAACAGCAGCCTCCAGAGCGAATACGCGAACCACAGTAACATCACCAACCACACCAGCATCACCTACTACCCTTACTACCAGCACTCTCTCTCCGTGGCTGCCGTCCTGACCGTGGCCTACCTCTTCATTTTCCTGCTGTGCATGGTGGGAAACGGCTTGGTGTGTCTGATTGTGCTGGAGAACCGGCGGATGAGGACGGTCACCAACCTCTTCATCCTCAACCTGGCCGTGAGCGACCTTCTGGTGGGCGTCTTCTGCATCCCGACCACCCTGGTGGACAACCTCATTACAGGTTGGCCGTTCACGAACACCGTGTGTAAGATGAGCGGTCTGGTGCAGGGCATGTCGGTCTCGGCCTCCGTCTTCACGCTGGTGGCCATCGCCGTGGACAGGTTTCGTTGCATCGTGTATCCCTTCCAGCCCAAACTGACCCTGCTGGTGGCCAAAGTGACCATAGTGATGATCTGGGGGCTCGCGGTGGTGATTATGTGTCCGTCGGCGGTCACTTTAACCGTGAAGAGAGTGGAGCACCACTACATGGTCCACGACGAAGACTACAACCACACATACCCTCTGTTCTCCTGCTTCGAGAACTGGGCCAGCCCACAGATGAGGAAGGTCTACACCACCGTCCTGTTCGCTCACATCTATCTCATCCCTCTCACGCTGATCACCATGTGCGGACGCATCGGGATCAAGCTCTCTACCACCTCGGTCATCTCCGGGAACGACCAGCAGGAGAGCGCGCAGTCCCACCAGGAAGGAAGGCCGCTCATTTCCCAGAAGAAGATTAAAGTGATTAAGATGCTGAGCGTGGTGGCGCTTTTATTCACGCTCTCCTGGCTGCCTCTCTGGACTCTGATGCTCCTCACCGATTACGGCGGTCTTAACGAAGACGAGCTGGATCTTCTGAGCGGCTATGTGTTTCCGTTCGCTCACTGGCTGGCGTTTTCCAACTCCAGCGTCAACCCTATTATCTACGGCTACTATAATGAGAACTTCAAGCGGGGTTTTCAGGCGGTGTGCAGAACGCATTCGTGCTGCTGCGGCGGGGTGAAGACGAGGAGCAGACCGCGACGGAAGTCCAGAGGAGACGCGAGGGATCCCGCGGTCAGCTCTAATCCCTTGGCCTTTGGTGGAAGGAACCGGGTTTACACCGACGGAGACGTGAAGGACTCCAGGACCTGTCTGGAGCTGGAGCACAGGAGAACCATTCGACTCTGTAATAACTCGGTCTGCTCGGATGACACGGGATCCAGCGTGGGATCCGggattaaaggggtcatgaaccaGAAAGTGTTTCGGACGGAGGAGGCAGAGAAAATAAGCCCGGTCAGGGTGGGTAAAAACCAAGCCTGGGACCAGTAGATGGATTATTCAAGAGACTTTCCAGACCTTTCACTTAATCAGCAGGACGATTCGGGCCTAAACATGTCTTTTGTGAAAACTATTATCTTCAACGGTTTGACAGCACACGGGGTTCAATGctcacaacacaaacaaacaccaaaacaaGCTGCAAatacctgcacacacacacacacacacacacacacacacacacacacacacacacaaaatgagccatgtcttttgtttttgtgtatttggcaCCATTTGTATAAATCCATGGTTATTTGTGCATGGTTTAACTatagtaaacatttttattaaactaca

Function

symbol description
npffr1l2 Predicted to enable G protein-coupled receptor activity and peptide binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in forebrain and hypothalamus. Orthologous to human NPFFR1 (neuropeptide FF receptor 1).

NR:

description
PREDICTED: neuropeptide FF receptor 1-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008188 neuropeptide receptor activity molecular_function

KEGG:

id description
K08375 NPFFR2; neuropeptide FF receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240245.1 True 1707 mRNA 0.53 4 2717013 2725424

Neighbor

gene id symbol gene type direction distance location
LOC122345384 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 coding upstream 185420 2528502 ~ 2531593 (+)
LOC122345419 man1b1b,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 coding upstream 439979 2270213 ~ 2277034 (+)
LOC122346086 LOC107587426,LOC107757959,LOC107709681,LOC107560220,LOC107681216,LOC107560224,LOC107709689 coding upstream 452428 2249658 ~ 2264585 (+)
LOC122346081 LOC107681222,LOC107709689,LOC107560224,LOC107757958,LOC107587469,LOC107690695 coding upstream 509468 2178583 ~ 2207545 (+)
LOC122346053 edc4,LOC107733561,LOC107726309 coding upstream 799561 1906927 ~ 1917452 (+)
hk2 hk2,LOC107668748,LOC107755855,LOC106585103,LOC108255852,LOC108411364,LOC107708252,LOC107599625 coding downstream 33931 2759355 ~ 2812420 (+)
pebp1 pebp1 coding downstream 692480 3417904 ~ 3422144 (+)
suds3 suds3,LOC107569732,LOC107708245 coding downstream 771825 3497249 ~ 3505203 (+)
hspb8 hspb8,LOC107720866 coding downstream 885048 3610472 ~ 3619055 (+)
LOC122345442 NA coding downstream 897718 3623142 ~ 3650703 (+)
G32770 figla non-coding upstream 107412 2608216 ~ 2609601 (+)
G32749 NA non-coding upstream 117374 2598250 ~ 2599639 (+)
G32765 NA non-coding upstream 137230 2578586 ~ 2579783 (+)
G32737 NA non-coding upstream 296182 2418377 ~ 2420831 (+)
G32702 NA non-coding upstream 473126 2243667 ~ 2243887 (+)
G32798 NA non-coding downstream 140742 2866166 ~ 2867373 (+)
G32819 sema4c,LOC107557380,LOC107708238,LOC107699920,LOC107697240 non-coding downstream 222669 2948093 ~ 3024488 (+)
LOC122345883 NA non-coding downstream 455385 3180809 ~ 3186522 (+)
G32934 NA non-coding downstream 567850 3293274 ~ 3293558 (+)
G32955 NA non-coding downstream 662070 3387494 ~ 3387728 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other upstream 67652 2627084 ~ 2649361 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other upstream 448819 2265145 ~ 2268194 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other upstream 697863 2010217 ~ 2019150 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other upstream 811514 1900627 ~ 1905499 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other upstream 874000 1835148 ~ 1843013 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other downstream 603376 3328800 ~ 3343070 (+)
G33015 NA other downstream 879762 3605186 ~ 4144396 (+)
G33174 NA other downstream 1897083 4622507 ~ 4623060 (+)
fbrsl1 LOC107656817,LOC107600129 other downstream 1918677 4644101 ~ 4902403 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other downstream 2878909 5604333 ~ 5649885 (+)

Expression


Co-expression Network