LOC122345798 (dcx)


Basic Information

Item Value
gene id LOC122345798
gene name dcx
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 25470652 ~ 25523837 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240268.1
CGCGGTGTGCCGGTAAGGAAGGCATCGCAGTCAGAGCAGCAGCTGAAGCGGCAGACAAAGACACGGAGCTCAGCGCGATCCTGCAGCATCCAcgcccacccacacacactcacacagcagCATTACAAGCTCACTGTACCACTGaccCATAATTCCTCAGTACAAGACCTTCACCACCACTATGGATGCCCCCTCTGAACATGTTGCCATGGAGCTGGACTTCGGCCATTTTGATGAACGGGACAAGACGTCTCGTACCCCACGAGGTGGACGTGCCAATGGTCTCCCCAGTCCCACCCACAGCGCTCACTGCAGTTTTTACCGTACACGCACCCTCCAGGCACTGACCAGCGAGAAAAAGGCTAAGAAGGTCCGATTTTACCGCAATGGTGACCGCTACTTCAAGGGCATTGTGTATGCAGTGGCCAGTGACCGTTTCCGCACATTTGATGCTCTACTGGCTGACTTAACCCGCTCTCTGTCTGATCATATCAATCTGCCACAAGGGGTCAGATACATTTTTACCATCGATGGAACAAGGAAGATTAGCACAATGGATGAGCTAGAGGAAGGTGAGAGCTATGTTTGTGCATCTGAGAACTACTACAAGAAAGTAGACtacactaaaaatgtaaaccCCAACTGGTCAGTGAATGTGAAAGCTTCAGCCAGCCAGAAGAACATGCTAGCTAACCGCACAGCTAGCGAGCCGAGGGAGAACAAGGAGTTTGTGCGACCGGAGTTGGTGACTGTGATGAGGAGCGGAGTGAAGCCACGGAAGGCTGTTCGTGTACTGCTCAATAAGAAGACAGCACACTCTTTTGAGCAGGTGCTCACCGACATCACAGAGGCCATTAAACTCGAAAGCGGAGCAGTGAAAAGGATCTATACACTGGATGGCAAACAGgtgaCCTGCTTGCAAGATTTTTTtggtgatgatgatgttttCATTGCCTGTGGACCAGAAAAATTTCGCTATGCACAGGATGACTTCTCCCTGGATGAAAACGAGTGTCGCGTTATGAAGGCCCCCAAAGGACAGAGGGGCTCTACTAAGAGTCCCGGTCCCGTTCGACGCTGCAAGTCACCGGCTGATTCCACTAATGGAACAGGCTCCAGTAGTCAGCTCTCTACTCCCATCTCTAAGCAATCTCCCATCTCGACCCCAACTAGCCCTGGCAACACTCGCAAACAGAAGGATTTATACTTGCCTTTGTCTCTGGAAGATGATGATTCACAGGGGGAGTCCATGTAGACTCTCCGTTTCCTGTATGTCAGTCAACATGCCAGTCACAAAGGTATATCTGGTGCTATCTGTCttgaaaacatcaaaatcacCACCCTAGTGACCAGGGTGAATGCACGCATCACCTTTGCTGCCCCTTGGCCATAAGGCTTTAGACCTCGAGGCTTTGCAGCGATGGTCAGTGCACTATTTGCTGCTTGAGAATTTGTCAcattcattttcagtgttttgataaTAGATTTTTAGTGACTGATGAAAAGTAGTATATGCAGGGCATATATTGCAGTTTGTATTGTAACAACAAACTCCTAAATTTGTACACATAGTCTGCTGttgaaattcattttatatgtatgaaaAATTTGAGCATACAGCAGGTCGGTTTAGCTGTTTAAACattcaaccttaatttttttagaccaataatttagactttttcatattgccttttttaaaaGCTTGGTCTTATGAATTCCAAGCAGCAAATAGTAATTTTTACAATGGTGTGATTGTCTGacttgtacaaaaacaaaaaagaacaaaaaaaaaagccaacgTTAACAATTTTCACcattaacaatttttattattctctttttgtaaccctctctctttcacttGCTCTCTCTGTGCAATGGTTTAGTGTGTTTTAAAGCCATTAAGGTTGAAATAGAACCCACAGAAATATTCATATCGTCATATCACTGTAAATAATGTGTACAGCCTACTCTACTCCATTAACACCATTAAAACGTAAACATAATCTTAAATGCTCATAGCTCTGAAGGTAATCATTGCAAATTGAGAGGAGGGGCCAAAAGCCATTTAATAAGGTCcttttactttgaaaataaataaaaattaggtAATTAGGTAagccagttctcactattaaagctttaattcaccccccaaaaaatgcctgtgttttactcacctttgaagtatatgtgaaatatatgtgactttcttctttcagaaaaatCCAGTCTGAGTTATATTTGtatgataaatattaatattttaaacataatacacatttttgtctTACTTCAGCAGCAACACAGGTATACATAAAAacttcttgtagcttcataaagtGAAGTTTAAACAATTGATGttacatggactattttaatgatgtccttactaaATTTGGGTGTGGCCTAATATGTGGtaattgcattgctgtctatggagggtcagaaagctctctgatttgatgaaaaataaaattattttctgttgtgAAGATGAGGTGCATAAAGGTGAGTAAAAGGTGCAacaacatgagaaaaaaatattttggggtgaactaaccttttaatagttagttaatagcaagaattggaccttaaaataacgTGACCAcaagcatatacattttttttaagttgtttttttatgtaaaaaaataccttTAGTTAATAACAGCAGATTTATTGTCTGCTATTTTTTGAAGTGATTTAAGGAAATAGAAAAATGGAAACCAGTATGACTTTGTTtctaaaatagcaaatataataaaaggttGTCCATTTAATACATGCTTCTTCTGAAGACATATCATTGACCAGGATTTACCAAAATTTCTTATTTACTAAAAGCCTTTCTCTGTGGTACAGCTTTTTTAATGGCATCAAAAAAGAGGTTGCCAGGTTTTATTCAATTGGCTGTCAATTGGTGTTATAACCAATTGTGACATCAAATAAGCAGGGAAGGgactggtttatttttattttattttcaaacaaagcTATTACAAGTCATATGATCCACATTTATGGTGCTGATTTGAAGCTCcaatgttttttaacaaaagagTAGCATGAACATTCTTCTAATTTGTCCAAGATAAGGGAAAAAAGGATGAATTTGAAAACACCTTGTAAGGTAGAGTGTCATTTTTTCAGAAAGCCAAAGTTATGTTGAAAAGAGGGAAGCTGAAAACTAATATCTTCACTCCCCATTGGTTATGTACTTACTGAACTTTCTCATTCATTGCTTTCATTTAAAGATAAACAGAATATCACACCtgaacatttacatatttaaaaaaatgactatatatGATAAAAGTACTCAATGGATATCAAAATTCATAATTTCTCAATTACATTACAGTGATCTCTGCAAGTATTGTGATATCTGTTGATCATCTCTTTGACAGACCTAGCACAAtgaaactacacacacacaatttccaTTCTCTTAATTTCCActgaatattcatattcatattctatatttttcacCTTCCATGGTGCCTTTTTAAAACCAtcctttgtgaaaaaaaaatcaaaacaactgaagaaaaaaaatctaaaagaaaactaaaacacGCTCATCTGTCACTTGTTTACTGTACctttttgcattgtttgatATAAAGTGGGGCTCAAACATTAACTATAACTACAAACTCTGTAACCTGTTACTGTAGTAGTTTATCAGGGTAATTACTTAGACATGGTGCAGATGCTTTATTTTCTCCTGTAGTGCTGTAAACACAGTTGTTTGTGTACTGATATTTTTGAGCTTggggacataaaaaaaaaatctgacttcCTCTGACTATCATGTACTTCCTGCTGTATCATCGTAACTTGTTTTGGTGATGTCATTCTGTGTATTAAACTTCTCTTTACTATTAAAA

Function

symbol description
dcx Enables microtubule binding activity and protein kinase binding activity. Involved in neuron migration. Located in neuron projection. Implicated in X-linked lissencephaly 1 and subcortical band heterotopia. Biomarker of high grade glioma and temporal lobe epilepsy.

NR:

description
PREDICTED: neuronal migration protein doublecortin

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K16579 DCX; neuronal migration protein doublecortin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240268.1 True 3902 mRNA 0.38 7 25470652 25523837

Neighbor

gene id symbol gene type direction distance location
LOC122345796 pak3,LOC107566210,LOC107712492,LOC103475835,LOC103141826,LOC108245238,LOC107093501 coding downstream 23990 25303475 ~ 25446662 (-)
zfpl1 zfpl1 coding downstream 207524 25231235 ~ 25263128 (-)
LOC122346005 LOC107727699,LOC107595976,LOC107660332 coding downstream 567363 24814609 ~ 24903289 (-)
taf6 taf6,LOC103372846 coding downstream 688004 24759478 ~ 24782648 (-)
sat2b sat2,sat2b,LOC107596022 coding downstream 719370 24749282 ~ 24751282 (-)
hip1rb hip1r,hip1rb,LOC107571022 coding upstream 94274 25618111 ~ 25651008 (-)
kntc1 kntc1 coding upstream 131670 25655507 ~ 25708679 (-)
trnal-cag_26 NA coding upstream 353834 25877671 ~ 25877755 (-)
trnal-cag_27 NA coding upstream 363521 25887358 ~ 25887441 (-)
trnal-aag_30 NA coding upstream 364677 25888514 ~ 25888596 (-)
G39470 NA non-coding downstream 16818 25453512 ~ 25453834 (-)
G39458 NA non-coding downstream 170736 25299523 ~ 25299916 (-)
G39456 NA non-coding downstream 171423 25297876 ~ 25299229 (-)
G39401 NA non-coding downstream 294303 25175308 ~ 25176349 (-)
G39384 NA non-coding downstream 419134 25051181 ~ 25051518 (-)
G39490 NA non-coding upstream 5046 25528883 ~ 25529111 (-)
G39503 NA non-coding upstream 33459 25557296 ~ 25557522 (-)
G39506 NA non-coding upstream 35038 25558875 ~ 25559218 (-)
G39514 NA non-coding upstream 58502 25582339 ~ 25583014 (-)
G39572 NA non-coding upstream 204400 25728237 ~ 25728470 (-)
G39413 LOC102215562 other downstream 188366 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 711984 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 722042 24746672 ~ 24748610 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other downstream 876536 24587724 ~ 24594116 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other downstream 1193348 24265464 ~ 24277304 (-)
LOC122344921 NA other upstream 38137 25561974 ~ 25568686 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other upstream 1575978 27099815 ~ 27107385 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 1859084 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 2362204 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 2731991 28255828 ~ 28264704 (-)

Expression


Co-expression Network