LOC122345804 (LOC107730346,LOC107595984,LOC107684368)


Basic Information

Item Value
gene id LOC122345804
gene name LOC107730346,LOC107595984,LOC107684368
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24714443 ~ 24723909 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240278.1
CTGACAGGTGCTCTTCCCAGTCAAAACCAAGCGCCACGCGACTGCTCATCTGTtcgaaataaaagaaaataagataagataaaataaaataaaatattttttttgttgttgttgttgtaagcTACTCAAAGTATATACACCGTTGACTTTCTTTAGGGTGATGTATTACGTCTATTTGCTGTGgttatttCTGTTAAGTTTGTGTCCTATTTCTGTTCCTGATTCCATACCTATTGgTATGTTCAGGACAAAGTGCCATGATCGTCATTTCTGGTTGTCGGTCAACTCAAATTTCCTTGGCCACAATTTCAGGTTTGATGTTAAAGCAGACTCCGAGGTCCAGAAGGTTTCAGGTCGGTGGGCAGCAGAGTGTGGTTATACTGTGGGTCTTGACTCCTGGGGTGACCTGCTGCTGCGTGTTTCCTATCTAGCCTGTCTGGTGGAGAATCAGAGGGAGACTGAATTTCAGTTGATGGTGTGGTTTATAAATCAGGACGTGAATGAACAGGAGAAATCCTACCCTTTACTGCTCGCCTGCCCTCTCCAGGTCCCATGGGCACATCGGGAGCTCGTCTGTGAGCAGAACTACATGGAGGTGTCTGTGCTGAAACTGCTGCCTCCTGATAATCATATCAGCACAGCCTGGGTAACACCGGCCCCTGtgGAGCTGGGTGAGGGTCTGAAGGAATGGAGGGTGGTGTTCCGCATGCCAACGCTCAATCAGGAGGGTGGCATGAAGGAGGAGACCGTTCCATTAAAAATGGCACACTTGCTGGGCTACCACATTAACACCACCAACTCTCGCATCCTCCTACGTTGTGCCTATGGATCCAAACTGGCATACATGCTACAGTGGGGTGAGACTGACGTGGAAGTGGTCAGTGCCACCATCTTATACAAGCTTAAATGGACCCTGTTGACAGTGGACATGTCGGTGTCCTGCACCATTGGTCAGGCTCGAATTGATGATTCTGATGTGTTGTGGTCTCACCCACATGACCCTCCCACTCTGGTCCATCCTCCCTTCATAGAAAAGGGTCTGAAGTTGGGCGTTGGGGGGCAGTACCTGTCTGAGTGTGTTGCCCACCAGCGTGGTTACAtgattcacaaaaacaacagaacttTGGAGATACGTATTCCTTTCGGTGCTGAAGGAGGAATCATAAAGAGTCATGTGATTGATGGACTGTACTCTCAGTCATATTTTGTGGACGTGTTCCTGCTGCGCGAGTGGGAGGATACTTCATTGAGTTTGACTCAGCAGCGGATGTTCAGAGCACTTTATATTCCTCACCTGCCCCGATCAGTCACACTTATTAACAAGACTGTGCCTTCACAGAGAGAGTTTTCCATTTCCTTGTGCTGTTTTCCTCGTGATGTTTCTTTGCGGAATGTGACTGTAGCAGGTCAGCCAGTACTCTGGGaggaaaaggaaaggaatgGATTTCGTCTCTCTCAAAATCCTCTTCCCAACAACACCTACATGTATCTGTTTCAGATGCCCTTCTCTCATCCACTCATAAGACAAAAGTATTTGGGAGACAGGTTTAGGAGGTATACTCTTTATGGGGTCTTCTCTTTCATTCTGTTTCCTGATGGAGAGATCTACAACCATTCTACCACTGTTGAGGCAGAACTACAGGATGTAGtcttgCCAAAGCTCGAAGGAGAGTGTACAGTGCGAGGTGTGCGGACATTGGCTTACTATGGTAATATAGACTCCTCTGAGTGGAGTTTGTATGTAGGAAGGAGGAGGCTTGACTGGGAGCTGGTGGAGCTTGGGGGATTCTCTCTGGACGCCCGCGAGCTGTACCTTAGCCTGGAAGTTCCACTATATGCCCCTGGCATGGCCTATGAGGGCCTGGGACTGCAAGGTCTGTTAGTGAGTGTGCTGGTGAGTTTAGTTCATGTGGAAACAGCAGAAGAACAGACTCATGTGCAGCGCTGTGTGTTCCCTGTGAGAGAGTTATTGGTGTGTCTGCCTGATGGAAGAATGGTGGTAATGATCGACACAGCTGGGGTTTCTCCTCCAGTTAAcccaaaacacacagctttgTTGGATCCTGCCTGTAGACCACTGGAGACCGACCATTCCAGAGCCTTATTCAGTTTCTCCATAGACTCATGTGGCACTTTCACAACACATGACGGTGATCAGGTGATTTATAGGAATGAGGTGAGAAACATGCCCCCTTTTCCTCCACACCTGAGACCCCTCAGCCAGAGTCAACCACATTATAGGGTGCCACTTGGCTGTGTCCATCCAGAAAATGGAAATCGCACCCTTGCCATCTACCTGCCATCCCATTCTCCCACACTTCTACCCATGAAGCACACAGGCAAACCAGCCTTGAACTCACACACAAGGAATCCTGAGAGCAGAGATCAAAAAAACCACTCATTGCCAGCTGTAGGATGACACCCCTAAAAGCAATAAAACTTGCCTGCACTGTTTCTATGGAGCTGAAGGTGGAGCCCGACAGCACAATGGAAGGGGCTCGTCCTGTTCGTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107730346 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240278.1 True 2512 mRNA 0.48 19 24714443 24723909

Neighbor

gene id symbol gene type direction distance location
rangrf rangrf coding downstream 24253 24685346 ~ 24690190 (-)
bspry bspry,LOC107746480,LOC107575043,LOC107730316,LOC107684387,LOC107596025 coding downstream 52843 24656827 ~ 24661600 (-)
traf2b traf2,LOC107697985,LOC107746475,LOC107567702 coding downstream 61902 24633302 ~ 24652541 (-)
tmem203 tmem203,LOC107559731,LOC107697982,LOC107684383,LOC107730349,LOC107580151 coding downstream 97527 24615358 ~ 24616916 (-)
tprn tprn,LOC107559738,LOC107746472,LOC107684357,LOC107595990,LOC107730352,LOC107697983,LOC107734963 coding downstream 100700 24597087 ~ 24613743 (-)
sat2b sat2,sat2b,LOC107596022 coding upstream 25373 24749282 ~ 24751282 (-)
taf6 taf6,LOC103372846 coding upstream 35569 24759478 ~ 24782648 (-)
LOC122346005 LOC107727699,LOC107595976,LOC107660332 coding upstream 90700 24814609 ~ 24903289 (-)
zfpl1 zfpl1 coding upstream 507326 25231235 ~ 25263128 (-)
LOC122345796 pak3,LOC107566210,LOC107712492,LOC103475835,LOC103141826,LOC108245238,LOC107093501 coding upstream 579566 25303475 ~ 25446662 (-)
LOC122345299 NA non-coding downstream 89565 24623559 ~ 24624878 (-)
G39298 LOC107683704,LOC107738921,LOC107600589,LOC107595993,LOC107730350 non-coding downstream 192422 24521562 ~ 24522021 (-)
G39296 NA non-coding downstream 194056 24519667 ~ 24520387 (-)
G39274 NA non-coding downstream 223651 24414900 ~ 24490792 (-)
G39337 NA non-coding upstream 6303 24730212 ~ 24730391 (-)
G39341 NA non-coding upstream 7730 24731639 ~ 24732075 (-)
G39347 NA non-coding upstream 29173 24753082 ~ 24753322 (-)
G39356 NA non-coding upstream 116836 24840745 ~ 24846363 (-)
G39357 NA non-coding upstream 138034 24861943 ~ 24863191 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other downstream 120327 24587724 ~ 24594116 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other downstream 437139 24265464 ~ 24277304 (-)
G39113 NA other downstream 513947 24197705 ~ 24200496 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other downstream 716704 23979664 ~ 23997739 (-)
G38973 NA other downstream 826763 23887303 ~ 23887680 (-)
naa38 naa38 other upstream 22763 24746672 ~ 24748610 (-)
LOC122345923 NA other upstream 30293 24754202 ~ 24758668 (-)
G39413 LOC102215562 other upstream 557977 25281886 ~ 25282286 (-)
LOC122344921 NA other upstream 838065 25561974 ~ 25568686 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other upstream 2375906 27099815 ~ 27107385 (-)

Expression


Co-expression Network