LOC122345828 (olfm1a,LOC107699781,LOC107552636,LOC107587661,LOC107672574,LOC108423683)


Basic Information

Item Value
gene id LOC122345828
gene name olfm1a,LOC107699781,LOC107552636,LOC107587661,LOC107672574,LOC108423683
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20550970 ~ 20564321 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240312.1
GGGTGGGCGGAGGCACGGAACCAATGAGATGAGCCGGTCTGCTGAAGCTCCGTCATTACTCGCGCGAAGAGAGCAGACGGAGCAGCAGCGCGCGTCTCGGAAACCGACAGAGCTCGAGTAATTATAAAGTTCAGCACCGGATAGCGCGAGTAGACACGCCCGAGATGAATTCGCTTGCGCCGGGTGCTTTACAGGAGCACGCCGCCTCTGACAGCAGCGCGGGTTACGGTTTTCTCCTGGAATGTGTATAATGAAGGTTACCGGGAAAGAGGAGAGCAGAGATGTCGGTGCCTTTGCTGAAAATTGGAGTAGTGCTCAGCACGATGGCGATGATCACCAACTGGATGTCGCAAACCCTGCCCTCTCTAGTAGGTCTGAATAGCACCAAACTGAGCGTGGCGCCTCCGGGTGTGCCGGACCGGAGCACTGGCGTGCTTCCTGCTAACCCAGAGGAGTCGTGGCAGGTGTACAGCTCAGCTCAAGACAGTGAGGGCAGGTGTGTGTGCACCGTTGTGGCTCCTCAGCAGACCATGTGTTCACGGGATGCCAGGACCAAACAACTGAGACAGCTCCTGGAAAAAgtccaGAACATGACCCAGTCCATCCAGAATCTTGACCAGAGGACTCAGAAAGACCTGCAGTACGTGCAAAGGATGGAGGTGCAGCTGAGAGGCCTGGAATCCAAGTTCAAACAGGTGGAGGAAAGCCACAAGCAGAATATCGCCAAGCAATACAAGGCCATAAAAGCGAAAATGGAGGAACTTAGGCCAATGATACCAGTGTTGGAGGAATACAAGGCCGATGCAAAATTGGTAATGCAGTTTAAAGAGGAGGTCAAGAATCTGACATCAGTGCTAAGTGAACTGCAGGAGGAGATCGGGGCCTTTGACTACGAGGAGCTTCACAACAGGGTGTCTAATCTTGAGGAGAGGCTTcgtgcatgcatgcaaaaattaGCTTGTGGGAAACTGACAGGGATAAGTGATGCCATAACCATAAAGACATCTGGATCAAGATACGGGTCCTGGATGACTGATCCACTTGCCCCCGACGGCGATACGAGGGTGTGGTACATGGACGGTTACCACAACAACCGCTTTGGGGAATACAAGTCAATGGCCGACTTCATGTATTCAGACAACTTCACCTCACACCGCTTCCTCACCTGGTCGGGAACAGGGCAGGTGGTCTACAATGGCTCCATCTACTTCAATAAGTTCCAAAGTAACACCATCATCAAATTCGACTTCAAGACAGCCACCATCAGCAAGTCCGGTCAGCTGGATTACGCCGGCTACAACAACCGTTACCACTATTCTTGGGGTGGCCACTCCGACATTGACCTAATGGTGGACGAAGGTGGACTTTGGGCGGTATATGCCACCAATCAAAATGCAGGGAACATTGTCATCAGCAAGATCAACCCACTGACCCTGCAGGTCATCAAGAGCTACACCACCAACCACCCAAAGAGGAGCGCAGGTGAAGCCTTCATGATCTGTGGGACGCTTTATGTTACCAACGGATACTCAGGAGGGACGAAGGTCTACTATGCTTTCCATACCAACTCCTCTACTTATGAGTATATCGACATCCCATTACAGAACAAGTATTCCCATATCTCCATGCTGGATTATAACCCTAGGGACAGAGCTCTATACGCGTGGAACAATGGACACCAGGTGCTGTATAACGTCACCTTGTTCCACGTTATTCGCTCTGAGGAACTCTAAAGTGACAATCTCCATCCCTTTGTTATATACAGTAGCACTGATGGAgtttattactgaaaaaaaggGGTAATGCCtgattattgtttaataaaagaagacataaaatgtatcaaaagtaATAGTTAATGGCAACATAACGAACAGCTGCCAAAaggtcttttttcttttgtaagctTTCCTTAGATAATTGTGTTTgaattttcactgcaaaaaaatgtgttaattagtatttttgtctcatagtccagtaaaaatattgaaacgTTCTTAAAGGAGACGTTGGatgcaaaaatcacttttacatggtgtttgcatataaatgtgTCTTAGCAGTGTAAGAGAattttcatccatttttttaaatcccagaACAACCTAAACAGTCAATAGTTTTGGTGTTGATGGTAACGCGCCACcgaatacagaaaaaaacagaagagacCGGAAGAGGTGGGAGAGCAGTAGCTCTTTATCATGAACAGAGCTGTTTCTGACAAAGTAAAGAGTGTTGTTTTACACAACCTTTGAGGACTTTTTGACCAAAGTATGTAACAGACATTTCATGGAGACCCTAAGAGTAATACCAACTTGTGGAAAATGGGCATCTAATGTcccctttaaaacaaaaactatttacttttgagaagcaaaactgtaatatatatatatatatatatatagatagatagatagatagatagata

Function

symbol description
olfm1a Involved in positive regulation of neural retina development. Acts upstream of or within axonogenesis and retina development in camera-type eye. Predicted to be located in extracellular region and synapse. Is expressed in several structures, including dorsolateral placode; nervous system; neural tube; optic cup; and optic vesicle. Orthologous to human OLFM1 (olfactomedin 1).

NR:

description
PREDICTED: noelin isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240312.1 True 2437 mRNA 0.46 7 20550970 20564321

Neighbor

gene id symbol gene type direction distance location
LOC122345837 zgc:101858,LOC107740831,LOC107699707,LOC107552635,LOC103359842 coding downstream 156417 20391686 ~ 20394553 (-)
LOC122344783 LOC107740822,LOC107665020 coding downstream 186844 20348875 ~ 20364126 (-)
LOC122344781 qsox2,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664,LOC107740821 coding downstream 202392 20326570 ~ 20348578 (-)
LOC122345827 LOC107552640,LOC107665013,LOC107587663,LOC107731062,LOC107740808,LOC559520,LOC107672520 coding downstream 226405 20320918 ~ 20324565 (-)
LOC122344776 LOC107731020,LOC107672533,LOC107552623,LOC107665026,LOC107587726,LOC107740807 coding downstream 243138 20304882 ~ 20307832 (-)
LOC122345848 NA coding upstream 113672 20677993 ~ 20679085 (-)
edf1 edf1,LOC107587662,LOC107740806,LOC107665036,LOC107552639,LOC107731034,LOC108423590 coding upstream 115219 20679540 ~ 20681669 (-)
LOC122345836 LOC107731020,LOC107672533,LOC107552623,LOC107665026,LOC107587726,LOC107740807 coding upstream 119482 20683803 ~ 20686924 (-)
LOC122345826 LOC107552640,LOC107665013,LOC107731062,LOC107587663,LOC107740808,LOC559520,LOC107672520 coding upstream 135929 20700250 ~ 20703893 (-)
qsox2 qsox2,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664 coding upstream 142138 20706459 ~ 20717827 (-)
G38158 NA non-coding downstream 264741 20284623 ~ 20286229 (-)
G38156 NA non-coding downstream 271869 20276668 ~ 20279101 (-)
G38147 NA non-coding downstream 390176 20155781 ~ 20160794 (-)
G38019 NA non-coding downstream 594308 19956428 ~ 19956662 (-)
G37928 NA non-coding downstream 847285 19703420 ~ 19703685 (-)
LOC122345854 NA non-coding upstream 94773 20659094 ~ 20659471 (-)
G38171 wdr5,LOC107741954 non-coding upstream 95586 20659907 ~ 20660855 (-)
G38172 NA non-coding upstream 97828 20662149 ~ 20662872 (-)
G38173 brd3b,LOC107740804,LOC107665032,LOC107731037 non-coding upstream 103203 20667524 ~ 20668474 (-)
LOC122345856 NA non-coding upstream 163073 20727394 ~ 20728862 (-)
LOC122345844 ppil3 other downstream 154236 20394731 ~ 20396734 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other downstream 423580 20125589 ~ 20127390 (-)
G38058 NA other downstream 495172 20051659 ~ 20055798 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other downstream 615394 19865019 ~ 19935576 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other downstream 1366992 19175463 ~ 19183978 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other upstream 341722 20906043 ~ 20936097 (-)
G38359 NA other upstream 799917 21364238 ~ 21369048 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other upstream 1048367 21612688 ~ 21619583 (-)
akap10 akap10,LOC107595480,LOC107587677 other upstream 1244692 21809013 ~ 21826105 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other upstream 1312760 21877081 ~ 21884022 (-)

Expression


Co-expression Network