LOC122345833 (wdr5,LOC107740805,LOC107741954,LOC107686885)


Basic Information

Item Value
gene id LOC122345833
gene name wdr5,LOC107740805,LOC107741954,LOC107686885
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20279514 ~ 20285219 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240318.1
TCTACATTTCTCTGGAAACGCGTTTGCTATCGCGCGTTAAAGTAACTGCATCAGGCGTGTGTGTATAAGTTCTTGAAAAGATGGCGGGCACGGGAGAGACAGGGCATCGAGTGAGGAATGCCGAGGATCGAGCCCCACCATGTCTTTAACACAACCATTGTGTGTGCATGCCGTTCAGCCAGCTAGCTACTCAGCGGGCTAATTTGAAATCATCCCGCAATGCATCCTTCGGCCCGCTTTTTCCGCTTGATACAACGAGAAAAAAACAGCGCAAACAAATACAGCAAGCTCTGCGTTCACGGATCGAAACGGCTGCGCGTGAAAGAAGGTTTTGTTACATTGTTGCAAAGCGCCGCTCATCAGCTCCACTCTGTCAGAGGAGATCCAGCTAGCCACATTCAGCTGTGTTTTCCCCCAAAAAGACCAATATACATCACCTAAACTGAACATAAACTTCGATCGGAATGCGCTAAACTTTATTCAGAAAAGCCAAAGCTGGGAGAAATGCGTACTCGTCGTCGACTAGTCGagtataataaagaaaaagcagcCCCCATCACAAGATCCTGAAGTTGTCATACACACTGCACATGCGCGGTGACGCGCGAGTAATTTCTATTAGGCTCAGCAAGTGCCCCGAAGCGCCTTTTCTGCCCGCTTGTAAACACAGTCGTTTGGAGCGACCTGTTTGAGCCCAAAAGTTTGCTTCAGAACCCGCCAAGCCACTTAATTTGAGCCACACAAGGTGCAGTGATGGCAGAGGAGAAGAAGccgaacacagaaacacataaaacacattcagcgtcatcagcatcatcatcatcatccaagTCTGCTGCCGTGAAGCCAAACTACTCCTTGAAGTTCACCCTCGCAGGTCACACAAAAGCTATATCGTCAGTCAAATTTAGCCCTAGTGGTGAATGGTTAGCCAGTTCATCGGCAGACAAGCTCATCAAAATATGGGGCGCTTTCGATGGAAAATTTGAGAAGAGTCTCGCAGGACATAAACTTGGAATATCAGACGTAGCCTGGTCTTCAGATTCAAATCTTTTGGTGTCTGCGTCAGATGACAAATCACTGAAGATCTGGGATATGAGTTCGGGAAAATGCCTGAAGTCACTGAAAGGCCACAGCAACTACGTCTTCTGTTGTAACTTCAACCCACAGTCGAACCTTGTTGTCTCCGGATCTTTCGATGAGAGCGTACGGATCTGGGATGTCAAATCCGGGAAGTGTCTGAAGACCCTGCCAGCACACTCTGATCCCGTCTCGGCGGTTCACTTCAACAGAGACGGATCACTAATAGTGTCCAGCAGCTATGATGGTTTATGCCGACTTTGGGACACTGCGTCAGGACAGTGTCTGAAAACTCTCATAGATGATGACAACCCTCCTGTCTCATTTGTGAAGTTTTCTCCAAATGGAAAATACATTCTAGCTGCGACACTGGACAAcaCGTTAAAGCTCTGGGACTACAGCAAGGGAAAGtgtttgaaGACATATACTGGACATAAGAATGAAAAGTATTGTGTGTTTGCCAATTTTTCTGTGACTGGAGGAAAGTGGATCGTCTCAGGCTCTGAAGACAACATGGTGTATATCTGGAATTTGCAGACCAAAGAAATTGTTCAGAAATTGCAAGGGCACACAGATGTAGTGATCTCGACAGCTTGTCACCCTACAGAGAACATCATTGCCTCCGCAGCCCTGGAGAACGACAAGACCATCAAACTGTGGAAAAGTGATTGTTAAGTTAAAGCACTGCACTTCAGAGGCTTTAGTGGAAACTTCAGAATGACGGCTTTCAGTAGCGTCTGTCTTTTACAGTGGTTTGATAGCACTTAGTGCAGGGTTATTATCTGAGAGATGGGCAGGTCCTGTCTGCTCCCAATAATTGACAATCTCACTCAAGCCTTTTTCCTCTTAATATACTCTAACAATGTAaagttttcagttcattttaatttattactgaataacaaatgttttttatcaaatcattgattcagttgttttatttatctggTTGGGTAAATATGAGTGTTCGTATGCTAAACATACCAAAAatggatgaatgtttttatgcaagacacttttttggtcttttttttgcCATCATACAATTTGCAACATGTTTTGCAGTCATTGGTAATTCACATATTCAATGCACTTAGGATTTTCAAATTGTTTCTAAACATTATTTCCACTATTTTAGCCGaaggaaaatttt

Function

symbol description
wdr5 Predicted to enable histone binding activity. Predicted to be involved in histone H3-K4 methylation. Part of protein-containing complex. Orthologous to several human genes including WDR5 (WD repeat domain 5).

NR:

description
PREDICTED: WD repeat-containing protein 5-like

GO: NA

KEGG:

id description
K14963 WDR5, SWD3, CPS30; COMPASS component SWD3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240318.1 True 2233 mRNA 0.44 15 20279514 20285219

Neighbor

gene id symbol gene type direction distance location
olfm1a olfm1a,LOC107699781,LOC107552636,LOC107587661,LOC107672574,LOC108423683 coding downstream 94491 20172243 ~ 20185023 (-)
lrrc8ab lrrc8ab,LOC107699779,LOC107552633,LOC107740800,LOC107731052,LOC107587658,LOC107672572,LOC108423682 coding downstream 141078 20132184 ~ 20138436 (-)
ppil3 ppil3 coding downstream 147567 20130459 ~ 20131947 (-)
zgc:101858 zgc:101858,LOC107740831,LOC107699707,LOC107552635,LOC103359842 coding downstream 149293 20127887 ~ 20130221 (-)
ptgs1 ptgs1,LOC107720239,LOC107699776,LOC107672577,LOC107587657,LOC107731054,LOC108255976 coding downstream 170276 20095469 ~ 20109238 (-)
LOC122345847 NA coding upstream 13927 20299146 ~ 20300348 (-)
LOC122345852 edf1,LOC107587662,LOC107740806,LOC107665036,LOC107552639,LOC107731034,LOC108423590 coding upstream 15275 20300494 ~ 20302616 (-)
LOC122344776 LOC107731020,LOC107672533,LOC107552623,LOC107665026,LOC107587726,LOC107740807 coding upstream 19663 20304882 ~ 20307832 (-)
LOC122345827 LOC107552640,LOC107665013,LOC107587663,LOC107731062,LOC107740808,LOC559520,LOC107672520 coding upstream 35699 20320918 ~ 20324565 (-)
LOC122344781 qsox2,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664,LOC107740821 coding upstream 41351 20326570 ~ 20348578 (-)
G38156 NA non-coding downstream 413 20276668 ~ 20279101 (-)
G38147 NA non-coding downstream 118720 20155781 ~ 20160794 (-)
G38019 NA non-coding downstream 322852 19956428 ~ 19956662 (-)
G37928 NA non-coding downstream 575829 19703420 ~ 19703685 (-)
G37926 NA non-coding downstream 577171 19702069 ~ 19702343 (-)
G38161 NA non-coding upstream 12089 20297308 ~ 20677930 (-)
LOC122345854 NA non-coding upstream 373875 20659094 ~ 20659471 (-)
G38171 wdr5,LOC107741954 non-coding upstream 374688 20659907 ~ 20660855 (-)
G38172 NA non-coding upstream 376930 20662149 ~ 20662872 (-)
G38173 brd3b,LOC107740804,LOC107665032,LOC107731037 non-coding upstream 382305 20667524 ~ 20668474 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other downstream 152124 20125589 ~ 20127390 (-)
G38058 NA other downstream 223716 20051659 ~ 20055798 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other downstream 343938 19865019 ~ 19935576 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other downstream 1095536 19175463 ~ 19183978 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 2929134 17346469 ~ 17350380 (-)
LOC122345844 ppil3 other upstream 109512 20394731 ~ 20396734 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other upstream 620824 20906043 ~ 20936097 (-)
G38359 NA other upstream 1079019 21364238 ~ 21369048 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other upstream 1327469 21612688 ~ 21619583 (-)
akap10 akap10,LOC107595480,LOC107587677 other upstream 1523794 21809013 ~ 21826105 (-)

Expression


Co-expression Network