LOC122345835 (LOC107740822,LOC107552616,LOC107665020,LOC107731008,LOC107672521,LOC107587705)


Basic Information

Item Value
gene id LOC122345835
gene name LOC107740822,LOC107552616,LOC107665020,LOC107731008,LOC107672521,LOC107587705
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20718617 ~ 20722106 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240320.1
ACAAAGACATAAACTTAGTCAGTGTCCTCCAAGAGATTTGACCATAACTACAATCACCACATGCACACGGCAAAAGGAACCTCAGGAAGACATGTCAGATGGAGCAAGAAAACTTtcacatgcttttaaaatgcctttaccAAGAACAGACTTTGAGCTCCATCATAATGAGCTCCTTCAAAACAGACATCATGAGGATGCTAAGCTGACAGAAGAGCTGGATAAAGATGGAGTTCACTGTGCTCAGGATAATAGAAAGAGACAAAGGATTAAAGCATTGCATGACAATCACTCTACGGATACTGAGGTCAGAAAGGGTGAGGATGGCCATTTTATGCCATGTGTCTTGGATCAGTGGCATCAGGCCCAACCCGACACGCCACCAAAGATAAAAGTGCCGCCCCATGAAGACGGCATTGTGTACAGATTAGTGGACACAGCGGTGGAGATTCTGTGTGGTCAAGCAAATGAAGACACTCTCGACCTTTATGAAACACCAAGCTATTTATTTGACGATGATAGTCGCAAGCGTTATCGGCAGGTGATCTTTCAGTTAACATCCGATGTACTTCATGAGATCTTGGGCGATCTTTTAAGAACAAAACAGTCCGCCCAGAAGACAGATGATCGATCTGTGATCTCAGCTCTGCAATGCAGTCAAATTTCcatcacatttttaaagGCTGCCGTGAGAAAAGAGATACAGAAAATTCTGAATTTAGAGCGAAGCGAGCAACGGATGACAGAGATGCTCCAAAAACTGTGCAAATACTGGTACGCCAAGAGAGACAGAGTGGACTTTATACTGATTCAGGAACTTCATAACGAGGAGAGAAGTTGGCTAGACTACAGTGCTGACCAGTACACTGTGAAAATGCATCTGACTGAGgagattttcagttttcttttggATGACACAATATTAGCCCTAAATCATATGCACATTTCAACCTAAAAGTCAAGTTT
>XM_043240321.1
ACAAAGACATAAACTTAGTCAGTGTCCTCCAAGAGATTTGACCATAACTACAATCACCACATGCACACGGCAAAAGGAACCTCAGGAAGACATGTCAGATGGAGCAAGAAAACTTtcacatgcttttaaaatgcctttaccAAGAACAGACTTTGAGCTCCATCATAATGAGCTCCTTCAAAACAGACATCATGAGGATGCTAAGCTGACAGAAGAGCTGGATAAAGATGGAGTTCACTGTGCTCAGGATAATAGAAAGAGACAAAGGATTAAAGCATTGCATGACAATCACTCTACGGATACTGAGGTCAGAAAGGGTGAGGATGGCCATTTTATGCCATGTGTCTTGGATCAGTGGCATCAGGCCCAACCCGACACGCCACCAAAGATAAAAGTGCCGCCCCATGAAGACGGCATTGTGTACAGATTAGTGGACACAGCGGTGGAGATTCTGTGTGGTCAAGCAAATGAAGACACTCTCGACCTTTATGAAACACCAAGCTATTTATTTGACGATGATAGTCGCAAGCGTTATCGGCAGGTGATCTTTCAGTTAACATCCGATGTACTTCATGAGATCTTGGGCGATCTTTTAAGAACAAAACAGTCCGCCCAGAAGACAGATGATCGATCTGTGATCTCAGCTCTGCAATGCAGTCAAATTTCcatcacatttttaaagGCTGCCGTGAGAAAAGAGATACAGAAAATTCTGAATTTAGAGCGAAGCGAGCAACGGATGACAGAGATGCTCCAAAAACTGTGCAAATACTGATTCAGGAACTTCATAACGAGGAGAGAAGTTGGCTAGACTACAGTGCTGACCAGTACACTGTGAAAATGCATCTGACTGAGgagattttcagttttcttttggATGACACAATATTAGCCCTAAATCATATGCACATTTCAACCTAAAAGTCAAGTTT

Function

NR:

description
PREDICTED: centrosome-associated protein 350-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240320.1 True 966 mRNA 0.43 6 20718617 20722106
XM_043240321.1 False 932 mRNA 0.42 6 20718617 20722106

Neighbor

gene id symbol gene type direction distance location
qsox2 qsox2,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664 coding downstream 790 20706459 ~ 20717827 (-)
LOC122345826 LOC107552640,LOC107665013,LOC107731062,LOC107587663,LOC107740808,LOC559520,LOC107672520 coding downstream 14724 20700250 ~ 20703893 (-)
LOC122345836 LOC107731020,LOC107672533,LOC107552623,LOC107665026,LOC107587726,LOC107740807 coding downstream 31693 20683803 ~ 20686924 (-)
edf1 edf1,LOC107587662,LOC107740806,LOC107665036,LOC107552639,LOC107731034,LOC108423590 coding downstream 36948 20679540 ~ 20681669 (-)
LOC122345848 NA coding downstream 39532 20677993 ~ 20679085 (-)
dnm1b LOC107595502,LOC107740810 coding upstream 216785 20938891 ~ 20966924 (-)
rab14 rab14,LOC107587668,LOC107595498,LOC108255506,LOC105889591,LOC106587009 coding upstream 347266 21069372 ~ 21074843 (-)
ttf1.6 NA coding upstream 358834 21080940 ~ 21084821 (-)
LOC122345218 timm22,LOC107740820,LOC107665041,LOC107731058,LOC107688620,LOC107587673,LOC107595490 coding upstream 455276 21177382 ~ 21179981 (-)
zswim7 zswim7,LOC107712139,LOC107665024,LOC107740465,LOC107563497,LOC107688637 coding upstream 541542 21263648 ~ 21293809 (-)
G38161 NA non-coding downstream 40687 20297308 ~ 20677930 (-)
G38173 brd3b,LOC107740804,LOC107665032,LOC107731037 non-coding downstream 50143 20667524 ~ 20668474 (-)
G38172 NA non-coding downstream 55745 20662149 ~ 20662872 (-)
G38171 wdr5,LOC107741954 non-coding downstream 57762 20659907 ~ 20660855 (-)
LOC122345854 NA non-coding downstream 59146 20659094 ~ 20659471 (-)
LOC122345856 NA non-coding upstream 5288 20727394 ~ 20728862 (-)
LOC122345858 NA non-coding upstream 55597 20777703 ~ 20778572 (-)
G38217 NA non-coding upstream 148039 20870145 ~ 20870357 (-)
G38218 NA non-coding upstream 163179 20885285 ~ 20886986 (-)
G38221 NA non-coding upstream 251859 20973965 ~ 20976673 (-)
LOC122345844 ppil3 other downstream 321883 20394731 ~ 20396734 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other downstream 591227 20125589 ~ 20127390 (-)
G38058 NA other downstream 662819 20051659 ~ 20055798 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other downstream 783041 19865019 ~ 19935576 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other downstream 1534639 19175463 ~ 19183978 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other upstream 183937 20906043 ~ 20936097 (-)
G38359 NA other upstream 642132 21364238 ~ 21369048 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other upstream 890582 21612688 ~ 21619583 (-)
akap10 akap10,LOC107595480,LOC107587677 other upstream 1086907 21809013 ~ 21826105 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other upstream 1154975 21877081 ~ 21884022 (-)

Expression


Co-expression Network