edf1 (edf1,LOC107587662,LOC107740806,LOC107665036,LOC107552639,LOC107731034,LOC108423590)


Basic Information

Item Value
gene id edf1
gene name edf1,LOC107587662,LOC107740806,LOC107665036,LOC107552639,LOC107731034,LOC108423590
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20679540 ~ 20681669 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240333.1
ATCCGGTTTAGTTCACTAGCATAAAGAGCAGGGACGTGCCCGACAAGTTGAGCGCTCCGTTGTCGCCTAAAAATCAAACACTTCTTCAAATAATTGTCGACAACATGGCAGAGAGCGACTGGGACACCGTGACCGTTTTGAGGAAGAAGGGATCGGCCGCACAGTCGAAGTCTAAGCAGGCTATCATTACTGCTCAGAGGAAAGGAGAGGCCGTCGAGACGTCGAAGAAATGGGCTGCTggacaaaacaaacagcacgTTGTGACCAAGAACACGGCCAAGCTGGACCGAGAGACAGAGGAGCTCAGCCATCAGAGAGTGCCTCTGGAAGTGGGGAAGGTGATCCAGCAGGGCCGGCAGGATAAAGGCCTCACCCAGAAAGACCTGGCGACTAAAATCAATGAGAAGCCTCAAATCATTGCGGAGTACGAATCTGGGAAGGCCATTCCCAATAACCAAGTAATGGGGAAGATTGAGCGAGCCATTGGCCTTAAGTTGCGTGGAAAGGACATTGGGTTGCCTCTTGATTCTGGCCCTAAgaagaaatgaatacaaaatcCTCGAAAGATCCACCATTCACTGAAACCTTTCAGTACTTGTATGATCTTTACAGTTAATCTTTATTAATTGCTGCATTACTTCATATTTTCTCGATTCAATGGTGGATCAGACGCACTCATATTGCCACCTACACAGAAGGCTTATTATCTAACGTTTTATGTCAGATGATGAAGACTtggaattataattttttttttttttttttttttagcctgctcactgctttgaaataaaaacttatttctATGTCTGA

Function

symbol description
edf1 Predicted to enable DNA binding activity. Predicted to be active in nucleus. Orthologous to human EDF1 (endothelial differentiation related factor 1).

NR:

description
endothelial differentiation-related factor 1 homolog isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K03627 MBF1; putative transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240333.1 True 813 mRNA 0.45 5 20679540 20681669

Neighbor

gene id symbol gene type direction distance location
LOC122345848 NA coding downstream 455 20677993 ~ 20679085 (-)
LOC122345828 olfm1a,LOC107699781,LOC107552636,LOC107587661,LOC107672574,LOC108423683 coding downstream 115219 20550970 ~ 20564321 (-)
LOC122345837 zgc:101858,LOC107740831,LOC107699707,LOC107552635,LOC103359842 coding downstream 284987 20391686 ~ 20394553 (-)
LOC122344783 LOC107740822,LOC107665020 coding downstream 315414 20348875 ~ 20364126 (-)
LOC122344781 qsox2,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664,LOC107740821 coding downstream 330962 20326570 ~ 20348578 (-)
LOC122345836 LOC107731020,LOC107672533,LOC107552623,LOC107665026,LOC107587726,LOC107740807 coding upstream 2134 20683803 ~ 20686924 (-)
LOC122345826 LOC107552640,LOC107665013,LOC107731062,LOC107587663,LOC107740808,LOC559520,LOC107672520 coding upstream 18581 20700250 ~ 20703893 (-)
qsox2 qsox2,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664 coding upstream 24790 20706459 ~ 20717827 (-)
LOC122345835 LOC107740822,LOC107552616,LOC107665020,LOC107731008,LOC107672521,LOC107587705 coding upstream 36948 20718617 ~ 20722106 (-)
LOC122344820 LOC107740822,LOC107745476,LOC107672521,LOC107552616,LOC107731008,LOC107587705,LOC107665020 coding upstream 40397 20722066 ~ 20726019 (-)
G38161 NA non-coding downstream 1610 20297308 ~ 20677930 (-)
G38173 brd3b,LOC107740804,LOC107665032,LOC107731037 non-coding downstream 11066 20667524 ~ 20668474 (-)
G38172 NA non-coding downstream 16668 20662149 ~ 20662872 (-)
G38171 wdr5,LOC107741954 non-coding downstream 18685 20659907 ~ 20660855 (-)
LOC122345854 NA non-coding downstream 20069 20659094 ~ 20659471 (-)
LOC122345856 NA non-coding upstream 45725 20727394 ~ 20728862 (-)
LOC122345858 NA non-coding upstream 96034 20777703 ~ 20778572 (-)
G38217 NA non-coding upstream 188476 20870145 ~ 20870357 (-)
G38218 NA non-coding upstream 203616 20885285 ~ 20886986 (-)
G38221 NA non-coding upstream 292296 20973965 ~ 20976673 (-)
LOC122345844 ppil3 other downstream 282806 20394731 ~ 20396734 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other downstream 552150 20125589 ~ 20127390 (-)
G38058 NA other downstream 623742 20051659 ~ 20055798 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other downstream 743964 19865019 ~ 19935576 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other downstream 1495562 19175463 ~ 19183978 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other upstream 224374 20906043 ~ 20936097 (-)
G38359 NA other upstream 682569 21364238 ~ 21369048 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other upstream 931019 21612688 ~ 21619583 (-)
akap10 akap10,LOC107595480,LOC107587677 other upstream 1127344 21809013 ~ 21826105 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other upstream 1195412 21877081 ~ 21884022 (-)

Expression


Co-expression Network