LOC122345848


Basic Information

Item Value
gene id LOC122345848
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20677993 ~ 20679085 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240336.1
CATCAAACCTGCTGCCTCGGGACATCTTTCTAACGGCATGGTCGAACGGGAGACGACGTCCGAGACCCCCACGAGAGACCTAGCAAGCCGCCGTCCCTCGCAATGACGGAGCGCTGTCCTTTAGCCGAGAAGGCGCTGTCGGAGGGCTTCGCGCGGCTGCGCTTCAAGGACACTTCTCTGCTGAtctggcagcagcagcagctggagCTGGAGAGAGCGCCACCCGCCAACTACCTCAGCCGCAGCCAGAGCTCCTGGTACAGCCAGTACGGCAACCAGGCAGTGGTGATACGGGACAAAACAAGACTGAAAGACTCCGATAGCACCGGACAGTCCCGGATTTGTGCTGTCATGTGATCCCGGTGTTCTTCTGGCGACGGATAGTTCTCACATTTGAGTGTTACTGACAAGTTTGAAGTATGGCATCTGTCCACATGTCATTACTCAAGCAGTTTAGACTAAACTTCAtgatattatacagtatttgttAACGTTTGTGCAGTGCAACAGCAGTATTCATAGAGGAACATTacctgtttattatatttacagacTGAAGAGTCAGTTGAACCAATCCGAAACCTAATTTTTAACCCAGATTAAAAGCGAACACTATATACCATTGCATGTCCCAATTTAACAAACTTCATATTCAAGTATATCATCACTGGTAGCAATATCATTAGGTTTTCGTTGCAAAATAAACCTTTATATTACTAAAGGCCTAGCAGGTATCTATCAATCTGTCTAGTGTggtgaaaaatacattactttgtcaaattgtaatgtttttacattacacGAAACGATCATATTTCTCACTTAAAACGGTGTCCACTAGCATGACTTACACTTGACaaagaaatgttaatataaCTTTTAAGTATGGGGCATTTGTTCCCTTTTTACAGAATCTTCGAAGcctcaaaaatgcaaaaaaaacaaacaaaccgtTTTTTAAAATGGAGATTCAAAAAGGTTTATAAAGTTTTAGTTGGTACATTCTGACAGCTAGACCTCAGTACACCGCtcagtgtttttcagttttactggttttaatgtcttctgaaacaaaataaatatatataaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240336.1 True 1093 mRNA 0.42 1 20677993 20679085

Neighbor

gene id symbol gene type direction distance location
LOC122345828 olfm1a,LOC107699781,LOC107552636,LOC107587661,LOC107672574,LOC108423683 coding downstream 113672 20550970 ~ 20564321 (-)
LOC122345837 zgc:101858,LOC107740831,LOC107699707,LOC107552635,LOC103359842 coding downstream 283440 20391686 ~ 20394553 (-)
LOC122344783 LOC107740822,LOC107665020 coding downstream 313867 20348875 ~ 20364126 (-)
LOC122344781 qsox2,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664,LOC107740821 coding downstream 329415 20326570 ~ 20348578 (-)
LOC122345827 LOC107552640,LOC107665013,LOC107587663,LOC107731062,LOC107740808,LOC559520,LOC107672520 coding downstream 353428 20320918 ~ 20324565 (-)
edf1 edf1,LOC107587662,LOC107740806,LOC107665036,LOC107552639,LOC107731034,LOC108423590 coding upstream 455 20679540 ~ 20681669 (-)
LOC122345836 LOC107731020,LOC107672533,LOC107552623,LOC107665026,LOC107587726,LOC107740807 coding upstream 4718 20683803 ~ 20686924 (-)
LOC122345826 LOC107552640,LOC107665013,LOC107731062,LOC107587663,LOC107740808,LOC559520,LOC107672520 coding upstream 21165 20700250 ~ 20703893 (-)
qsox2 qsox2,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664 coding upstream 27374 20706459 ~ 20717827 (-)
LOC122345835 LOC107740822,LOC107552616,LOC107665020,LOC107731008,LOC107672521,LOC107587705 coding upstream 39532 20718617 ~ 20722106 (-)
G38161 NA non-coding downstream 63 20297308 ~ 20677930 (-)
G38173 brd3b,LOC107740804,LOC107665032,LOC107731037 non-coding downstream 9519 20667524 ~ 20668474 (-)
G38172 NA non-coding downstream 15121 20662149 ~ 20662872 (-)
G38171 wdr5,LOC107741954 non-coding downstream 17138 20659907 ~ 20660855 (-)
LOC122345854 NA non-coding downstream 18522 20659094 ~ 20659471 (-)
LOC122345856 NA non-coding upstream 48309 20727394 ~ 20728862 (-)
LOC122345858 NA non-coding upstream 98618 20777703 ~ 20778572 (-)
G38217 NA non-coding upstream 191060 20870145 ~ 20870357 (-)
G38218 NA non-coding upstream 206200 20885285 ~ 20886986 (-)
G38221 NA non-coding upstream 294880 20973965 ~ 20976673 (-)
LOC122345844 ppil3 other downstream 281259 20394731 ~ 20396734 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other downstream 550603 20125589 ~ 20127390 (-)
G38058 NA other downstream 622195 20051659 ~ 20055798 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other downstream 742417 19865019 ~ 19935576 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other downstream 1494015 19175463 ~ 19183978 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other upstream 226958 20906043 ~ 20936097 (-)
G38359 NA other upstream 685153 21364238 ~ 21369048 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other upstream 933603 21612688 ~ 21619583 (-)
akap10 akap10,LOC107595480,LOC107587677 other upstream 1129928 21809013 ~ 21826105 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other upstream 1197996 21877081 ~ 21884022 (-)

Expression


Co-expression Network