ptgs1 (ptgs1,LOC107720239,LOC107699776,LOC107672577,LOC107587657,LOC107731054,LOC108255976)


Basic Information

Item Value
gene id ptgs1
gene name ptgs1,LOC107720239,LOC107699776,LOC107672577,LOC107587657,LOC107731054,LOC108255976
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20095469 ~ 20109238 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240344.1
GAGATTTCCCTATTCTTTTCAAATGGCTTTTGGGGCCAGAAGACCCTTTTCTGTGCTGCGTTCGGCGTGTTGTGGTTTTAATAGTGATCTTGGTCCGGTGCGAGCGTGAGTTTAATCTGGTATCTCCTTTCCACTCTGAAAGATCCTTTCGGGCGTTTTTTTCTCATCAATTGAAAAAAGCCTCCGCGGGTCTCAGTCAGTGCACGAACATACTTTGGCATGCATCTATGCCCTGCATGTGAAGATAAGCGacatgaaattatttatttggagTTTTTTCCGTCTTTAACGCCACTTTTGAATTCTTTGTGCTTTCGTGTTGTAAtcgttttttgtatttaatactgTCTTGTGTTCCAACCTACAATGAAAGtgtttagttttttactgAAGTGGACGTTTATCCTGCTGCTGAGTATCTGCTCGTGTGTTCCTGAAGAAAGCCCAACTTCATCAGACATTGTGAATCCTTGTTGCTATTACCCTTGTCAAAACCGAGGGATTTGTGTTCGTTACGGTCTGGACAGATATGAATGTGACTGCACCAGAACAGGCTTCTACGGAGAAAATTGCACTATACctgagtTCTGGTCTCGAGTCTATCAGCTCCTGAGGCCCAGTCCTCACAGTGTCCATTACATCCTCACCCACTTCGACTGGCTATGGAACATCATCAACAGGACTTTCCTCAGGGATTGGCTCATGCAAAAAGTGCTTACAGTAAGAGCCAACTTAATCCCAAGTCCCCCAACTTACAATTCCAAATATGAGTACTTGAACTGGGAAGCGTATTCCAACCTCACCTACTACACAAGACTTCTCCCCCCAGTCCCTCAGGACTGCCCAGTGCCAATGGGAACCAAAGGAAAAATGAAACTTCCAGACCCCAAGCTCCTGGCAGAGAAGTTCCTGTTAAGGAGGAATTTCAGACACGACCCTCAGGGAACAAATTTAATGTTCGCATTTTTCGCTCAGCACTTCACGCACCAGTTTTTCAAAACTCACAACCGCGTTGGACTTGGGTTCACAAAAGGCTTGGCTCATGGGGTGGATGCTGGACACATTTACGGAGATACTCTTGATCGCCAGCTGGACCTCAGACTGCACAAAGACGGGAAGTTGAAGTACCAGGTGATGAATGGTGAGATGTATCCCCCCACAGTGCTGGATGCACCGGTCAAAATGAGCTACCCGCCGTCTGTCCCCCCGGAACAGCAGCTGGCCATTGGGCAAGAAGtgtttggcctgctgccgggtCTCAGCATGTACGCCACCCTTTGGCTGCGTGAGCACAACCGTGTGTGTGATATCCTGAAACAAGAACATCCTACCTGGGGGGATGAGCAGCTGTTTCAGACCACCAGGCTCATAATTATAGGTGAGACCATTCGTATTGTGATCGAGGAGTATGTACAGCATCTGAGCAGTTACCGGCTGAAGCTCCAGTTTGATCCCACGCTGCTGTTCAACTCACAGTTTCAGTACCAGAACCGCATTGCTGTGGAGTTCAATCAGCTTTATCACTGGCACCCACTCATGCCTGACAGCTTCCAAATTGATGGAAAGGACATTCACTATCCTCAGTTCATTTTCAACACCTCTATCCTCACCCACTACGGGGTGGAGAAACTGGTTGAGGCATTCTCAACCCAACCTGCGGGACAGATTGGAGGTGGATATAATATTCACCCAGTGGTGCTCAGAGTAGCAGAGGGGGTCATCATTGAATCAAGAGAGCTTCGACTTCAGCCCTTCAACGAATATCGCAAGAGATTCAATCTGAAACCCTACAAGTCATTTTTAGAATTGACAGGAGAAGAAGAGATGGCTAAAGAACTAGAGGAACTATATGGTGATATTGATGCTCTGGAGTTCTACCCAGCTCTTTTGCTAGAGAAGACCAGATCTGGTGCGATATTTGGCGAAAGCATGGTGGAAATGGGGGCCCCATTTTCCCTCAAAGGCCTCATGGGAAATCCTATTTGCTCACCTGAGTACTGGAAGCCCAGTACATTTGGGGGAAAGACAGGTTTTGATATAGTAAACTCTGCTACTTTGAAGAAACTGGTTTGCCTCAACACAAAATGGTGTCCGTATGTATCTTTCCATACTCCTCCACCAGATTATAGACAACAGAGGACATCTCACGGTGAACTTTAGCACAGTTTTAAATCACTTCTAATTACAGTTCAATATCTGTCTGTGACTACGAGTTATGTTGTGACTTCACCTTATGGGGTCTTACTTGGGAATCCTCTTGGATTAAGAGAAAATGGCTATGAAGTTTGGATTTGTTATGCATGCCTGAGCCCCTCCCTGTGCTTGCGGGTATAAATAGGTGACAGGTGCATCCTCTTATCATATTTTTACTTCAGAGCTGATTAAATGAACAATGTTTGAGATTCACCAGACAAATTCTATAGACCTTAGGCTCAGAAAACactttattagtaaataattcaaatatctttctgtgatttttttttttttttttttttctcctctctcccTGACACATTCATGATAACAGTTGCTGGGCTTTGTAAGGAATGGAGACGCTATGGCCCCTTGCCACAACCTCAAACGTATCACCAGTTTCCAGGGACAAGTTCTTAGCTCCTTAGCATTGCCATTTTCTCTTAATCAAAGAGGATTCAGGCTCCCAAGTAAGACCCATAATGTAGAGTCATGACCTATCTTCGTTCCCTCCTTTCGTTACGTACGAAACCGAGATGATGTAAATGacaatgtattgttttgtaaatCAGAACTGAGTTAGTTATGACAATTGTtagagttgttttgttttgttttgttttttaataaggtGACTGAAGAATTCATTTTCATAgtattataatatcattaatattttatgggTTATAAAAGAATGTTTATTACTATGGAAGCATATGGGTAGCCTATTCATTTTGAAAGGTAATATGTAAAATTTCAATCCAATATGTAAATGCCCCCCAAAAATCTAATATGTCATATACCcaaattcattatatattttgcgTAACCAAGGAAAACTTTTgcaaaatcataatttaaatgctgttttagcttaaaaaaaaaaaatttgacttACACATTGGAAACTCGGAACTGCATTTTCATCTTAATACCCACATGATCATTTCAGAGTGCATTCAGAACCAAAGGTGCAGCAAAAGAGCAGCACAATGgtgatttaaatgtctttttatttttttaaatgcataattttaatgcattaagtgAGTCTTGcacttaatgtgttttaaattgcattttaaataatgtagatttgaaaatgtattctcaGGTAATCATGCCCCGACCTGTCAAGCATCAATACGCAGTTAATATTCCCCATTAACCAAATGCTTTTTATCTGCCTCAACATCTGTTTACAATCCGATGCACATGAGCAAACGGCCAGCGCTATTCTACAGGTGTTTACCcttttgacaatttttttatatatatattagtattttattctCATGGATCACGCATGTCAGATCGATGTGACACTGCTGCCTCAACATCTTACTGTTTGCTGGTGAAAAGTGTTTGGTTAATGGGGAATATTGACCTGTCGTGCGTCTTGTTGCTTGATGTGATTATTGACAGGTCGGGGGCGTGATCACCTCAGAATGCATGTTCAAATCCACATAGGCTTAAACTACATTATCATAAGGTATCCgatgaaaatgcagtttaagCGCCACAAGTGtaaatctcaatgcatttaagaaaaataaaatgatgagatgaaatgaaatgaaatcctAATTTTCCGACttgcaaaaaaagtatgtttttaatgagcatatttttcatattacaaCCCATATTCTTCCATATTACAACATACACaagcattttatgcatttaactgACCCTTTGGATCACGCAACTATTGCCACCTGTCAGATTTAGTTCTTTTATAATTCAATCCCACAATACATTCTCACCTGCTTTAAGAGCATATTTTACTGAATATCATGCTACTTACAGTAATCTCATAACTAAAGGGTTGATGATTTCCTGGTTCATACCGAAGAATCCATATTCTTGACAATTCACTTTAGACCATGAATATGGGCATTTCCTGCCTTATTACCTACTTAAGCCTTCAAAGCAGTGTAACCTTAAATCATCAGCAGGATTCAGtcttacagattttttttttaactttctttaCTGATACTTATGTTGCCAAACAACCATTCATCTTTCAAACTGCTTCTCTTACGTAGGTTTTTGTAGTCTATCACATTGGTTGGATGACCTGTACATCACAGGCCAATgaaacatttagtttaattcatagtcaaaaaaagaaaagaaaaagtattccgtccattttatgtttatgctgAAAAAATCAATTGTATTTGCTGCCTCGAAGTCTGTTCTGTTAAGTAATTTCCAATGCACTGTTCAGTTTTCCTTGAACTGTGGATCTGTGATGGCCAGTGTTGAATTCATTTATGAACTTTTGACGTGAATGAATGTAACCTCACAATATTCCTGTATAATTTCCAagcaaaatacagtaattagtAGTAGCATTACTGAAAATTATCTGCAATATGATGTCAAAATAATATCTGTATGTCTGATCATTTACAAAagaggtttaaaaataaaaattgctaatttta

Function

symbol description
ptgs1 Enables peroxidase activity and prostaglandin-endoperoxide synthase activity. Acts upstream of or within animal organ development; cellular response to organic cyclic compound; and vasculogenesis. Is expressed in several structures, including cardiovascular system; digestive system; eye; mesoderm; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human PTGS1 (prostaglandin-endoperoxide synthase 1).

NR:

description
prostaglandin G/H synthase 1-like isoform X1

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0001822 kidney development biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0001570 vasculogenesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004601 peroxidase activity molecular_function
GO:0004666 prostaglandin-endoperoxide synthase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00509 PTGS1, COX1; prostaglandin-endoperoxide synthase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240344.1 True 4658 mRNA 0.40 11 20095469 20109238

Neighbor

gene id symbol gene type direction distance location
pmpca pmpca,LOC107672556,LOC107699775,LOC107731046 coding downstream 19761 20071282 ~ 20075708 (-)
ptrh1 ptrh1 coding downstream 34272 20058275 ~ 20061197 (-)
cfap157 cfap157,LOC107587652,LOC107672550,LOC107731015 coding downstream 55300 20035492 ~ 20040169 (-)
LOC122345820 LOC107720235,LOC107699702,LOC107587551,LOC107756287,LOC107567124 coding downstream 332361 19759722 ~ 19763108 (-)
mymk tmem8c,LOC107587553,LOC107699700,LOC107672546,LOC107720238,LOC107756286,LOC107567143 coding downstream 355192 19738248 ~ 19740277 (-)
zgc:101858 zgc:101858,LOC107740831,LOC107699707,LOC107552635,LOC103359842 coding upstream 18649 20127887 ~ 20130221 (-)
ppil3 ppil3 coding upstream 21221 20130459 ~ 20131947 (-)
lrrc8ab lrrc8ab,LOC107699779,LOC107552633,LOC107740800,LOC107731052,LOC107587658,LOC107672572,LOC108423682 coding upstream 22946 20132184 ~ 20138436 (-)
olfm1a olfm1a,LOC107699781,LOC107552636,LOC107587661,LOC107672574,LOC108423683 coding upstream 63005 20172243 ~ 20185023 (-)
LOC122345833 wdr5,LOC107740805,LOC107741954,LOC107686885 coding upstream 170276 20279514 ~ 20285219 (-)
G38019 NA non-coding downstream 138807 19956428 ~ 19956662 (-)
G37928 NA non-coding downstream 391784 19703420 ~ 19703685 (-)
G37926 NA non-coding downstream 393126 19702069 ~ 19702343 (-)
G37877 NA non-coding downstream 585187 19505921 ~ 19510282 (-)
G37801 NA non-coding downstream 808621 19286627 ~ 19286848 (-)
G38147 NA non-coding upstream 46543 20155781 ~ 20160794 (-)
G38156 NA non-coding upstream 167430 20276668 ~ 20279101 (-)
G38158 NA non-coding upstream 175385 20284623 ~ 20286229 (-)
G38161 NA non-coding upstream 188070 20297308 ~ 20677930 (-)
LOC122345854 NA non-coding upstream 549856 20659094 ~ 20659471 (-)
G38058 NA other downstream 39671 20051659 ~ 20055798 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other downstream 159893 19865019 ~ 19935576 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other downstream 911491 19175463 ~ 19183978 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 2745089 17346469 ~ 17350380 (-)
LOC122345693 NA other downstream 3235538 16787809 ~ 16859931 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 16351 20125589 ~ 20127390 (-)
LOC122345844 ppil3 other upstream 285493 20394731 ~ 20396734 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other upstream 796805 20906043 ~ 20936097 (-)
G38359 NA other upstream 1255000 21364238 ~ 21369048 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other upstream 1503450 21612688 ~ 21619583 (-)

Expression


Co-expression Network