hmbsa (hmbsa,LOC107717875,LOC107722788,LOC107597563,LOC107587344)



Basic Information


Item Value
gene id hmbsa
gene name hmbsa,LOC107717875,LOC107722788,LOC107597563,LOC107587344
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8203420 ~ 8210189 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043240349.1
AGGAAAACCCTCCACCAGTTgctcattcattcagtcattcattagACCTGGACCTGAAACATCATCTTCTCCAGCCAGAGCTGTAAAAATATCTGCAAATAATATGGAAGGGCCATTCAGGTTTATTAGAGAAGGAAATGGCAATGTCAGTCGGGTTATTCGCATGGGAACAAGGAAGAGCCAGgctgtgtgtgtctctcagctGGCTCGCATTCAGACAGACAGCGTGGCCGGCACCCTGAAAGAGCTTTATCCAGATGTTCATCTAGAAATAGTTGCCATGTCTACAATTGGGGACAAAATCCTGGACACCGCATTATCAAAGATTGGCGAAAAGAGCCTCTTTACCAAAGAGCTGGAGAATGCACTCGAGAGGAATGAAGTGGATATTGTGGTGCACTCTCTTAAGGATTTACCTACCTCATTGCCTCCTGGATTCACTATTGGAGCCATTCTTCAGAGAGAAAATCCCCATGATGCAGTGGTGCTTCATCCAAAGAATGCTGGACTTACCCTAGACAGCTTGCCAGAGAAGAGtgtgattGGCACAAGTTCACTTCGAAGAGCAGCTCAGCTGAAGAAACGATTCCCTCAACTAGAGTTTGAAAATATTAGAGGGAACCTAAACACCCGTCTGAAGAAGCTGGATGAAAAGGATGACTACGCTGCCATTATTCTGGCTGCAGCGGGCCTTAAACGTATGGGATGGGAAAGCAGAATCAGTCAGATTCTGGGCCCCGAAGATTGCATGTATGCTGTTGGGCAAGGAGCACTGGCAGTGGAAGTCAGAGCACAAGATAAAGACATCCTGGAAATGGTGTCTGTCTTGCACCATCCAGACACAGTGCTGCGGTGCATCTCAGAGAGAGCTTTCCTCAAGCAGCTTGAAGGAGGCTGCAGTGTGCCCGTTGCTGTGCATACAGAAGTGAAAGGGTCCATGCTATATTTGACTGGAGCAGTTTATAGTTTGGATGGAGCTGATTGCTTGAAGGACACTATGCAAACGGTTGTGGAAATCAGCAACAAAGTGAGCGAGAGTGCACAGGAGTGTGTACACGTTGGAGTCACTGCCAACAACGTATCATCGTCGGCCCTTGATGCTGCGGAGAACCTGGGAATGGATCTGGCAAATGCTCTCCTTAACAAGGGGGCCAAAGACATTCTCACAACTGCCAGGAAACTAAATGATGCTCGCTAGCTGGCTTTTACACTTTGTGCACTGGAGTATTAGGCCTAATTTTGGAACCTTTGACATGCTGTTAACTTAACTTAAACTGTACACCTCAACTATATGCTCTGTAGCTGAATCTCTAGAGCTTAAATACAACCTTGATTGGCTGTGTAATCTGTGACTAAAAACAACTTCAGATACTATACCTCAGTGCCTCAGTTTAACAATGTGGCAGCTTTAGGTTTTTTTCTCAGCTGCATACACAAGACATTTCTACTGTTGTGACTATTGTATTGTCTCAGGCACCGATTTCTGGAAGAATTCATGCTTCCACTTATGATGTCAGACTGCTGTCTTCATCTATGAACCACTTGAAAAGGAGTTACTTTTCATATATtgccattgtttttaatgtagaactgaatatatttgatatgcaaggcatttttatttaacagcatatcctcagtttttaaaacataccatgcctttttaaatacagagtaTCTATTGATGAGAAACCAAGAGTTTGaatttggaaaaaagaaaattaagaaattacttggttttatatttatgcCGTAGTTTTCATCCCACAATGTGCCTTTAAGGTTTTAATTAACCAATCAATTGTTTCTAGAATGTTAACTTCTgcaattatcaaaaataaactgATCCCATTATTCCCTTCCCTCCA
>XM_043240350.1
CGTGTTCTTGGTAGACGGAAGTATCGCTCCCGTCTAGGTCACGCAAAAATCGGGTCACGAGTTTGAGGTAGCTGTTGGGAATTCTCGAAACCATCCGTTCAACCAAAACAACTGTGCAAATGAGTGAAAAATCCTGACGATATAGGTCGGGGAACAGATCGTTCCACTTTAACAGCGGAGATGTCTGGGAACGTTAGTGCTTCTCAAGAAGGAAATGGCAATGTCAGTCGGGTTATTCGCATGGGAACAAGGAAGAGCCAGgctgtgtgtgtctctcagctGGCTCGCATTCAGACAGACAGCGTGGCCGGCACCCTGAAAGAGCTTTATCCAGATGTTCATCTAGAAATAGTTGCCATGTCTACAATTGGGGACAAAATCCTGGACACCGCATTATCAAAGATTGGCGAAAAGAGCCTCTTTACCAAAGAGCTGGAGAATGCACTCGAGAGGAATGAAGTGGATATTGTGGTGCACTCTCTTAAGGATTTACCTACCTCATTGCCTCCTGGATTCACTATTGGAGCCATTCTTCAGAGAGAAAATCCCCATGATGCAGTGGTGCTTCATCCAAAGAATGCTGGACTTACCCTAGACAGCTTGCCAGAGAAGAGtgtgattGGCACAAGTTCACTTCGAAGAGCAGCTCAGCTGAAGAAACGATTCCCTCAACTAGAGTTTGAAAATATTAGAGGGAACCTAAACACCCGTCTGAAGAAGCTGGATGAAAAGGATGACTACGCTGCCATTATTCTGGCTGCAGCGGGCCTTAAACGTATGGGATGGGAAAGCAGAATCAGTCAGATTCTGGGCCCCGAAGATTGCATGTATGCTGTTGGGCAAGGAGCACTGGCAGTGGAAGTCAGAGCACAAGATAAAGACATCCTGGAAATGGTGTCTGTCTTGCACCATCCAGACACAGTGCTGCGGTGCATCTCAGAGAGAGCTTTCCTCAAGCAGCTTGAAGGAGGCTGCAGTGTGCCCGTTGCTGTGCATACAGAAGTGAAAGGGTCCATGCTATATTTGACTGGAGCAGTTTATAGTTTGGATGGAGCTGATTGCTTGAAGGACACTATGCAAACGGTTGTGGAAATCAGCAACAAAGTGAGCGAGAGTGCACAGGAGTGTGTACACGTTGGAGTCACTGCCAACAACGTATCATCGTCGGCCCTTGATGCTGCGGAGAACCTGGGAATGGATCTGGCAAATGCTCTCCTTAACAAGGGGGCCAAAGACATTCTCACAACTGCCAGGAAACTAAATGATGCTCGCTAGCTGGCTTTTACACTTTGTGCACTGGAGTATTAGGCCTAATTTTGGAACCTTTGACATGCTGTTAACTTAACTTAAACTGTACACCTCAACTATATGCTCTGTAGCTGAATCTCTAGAGCTTAAATACAACCTTGATTGGCTGTGTAATCTGTGACTAAAAACAACTTCAGATACTATACCTCAGTGCCTCAGTTTAACAATGTGGCAGCTTTAGGTTTTTTTCTCAGCTGCATACACAAGACATTTCTACTGTTGTGACTATTGTATTGTCTCAGGCACCGATTTCTGGAAGAATTCATGCTTCCACTTATGATGTCAGACTGCTGTCTTCATCTATGAACCACTTGAAAAGGAGTTACTTTTCATATATtgccattgtttttaatgtagaactgaatatatttgatatgcaaggcatttttatttaacagcatatcctcagtttttaaaacataccatgcctttttaaatacagagtaTCTATTGATGAGAAACCAAGAGTTTGaatttggaaaaaagaaaattaagaaattacttggttttatatttatgcCGTAGTTTTCATCCCACAATGTGCCTTTAAGGTTTTAATTAACCAATCAATTGTTTCTAGAATGTTAACTTCTgcaattatcaaaaataaactgATCCCATTATTCCCTTCCCTCCA
>XM_043240351.1
AGGAAAACCCTCCACCAGTTgctcattcattcagtcattcattagACCTGGACCTGAAACATCATCTTCTCCAGCCAGAGCTGTAAAAATATCTGCAAATAATATGGAAGGGCCATTCAGGTTTATTAGAGAAGGAAATGGCAATGTCAGTCGGGTTATTCGCATGGGAACAAGGAAGAGCCAGctGGCTCGCATTCAGACAGACAGCGTGGCCGGCACCCTGAAAGAGCTTTATCCAGATGTTCATCTAGAAATAGTTGCCATGTCTACAATTGGGGACAAAATCCTGGACACCGCATTATCAAAGATTGGCGAAAAGAGCCTCTTTACCAAAGAGCTGGAGAATGCACTCGAGAGGAATGAAGTGGATATTGTGGTGCACTCTCTTAAGGATTTACCTACCTCATTGCCTCCTGGATTCACTATTGGAGCCATTCTTCAGAGAGAAAATCCCCATGATGCAGTGGTGCTTCATCCAAAGAATGCTGGACTTACCCTAGACAGCTTGCCAGAGAAGAGtgtgattGGCACAAGTTCACTTCGAAGAGCAGCTCAGCTGAAGAAACGATTCCCTCAACTAGAGTTTGAAAATATTAGAGGGAACCTAAACACCCGTCTGAAGAAGCTGGATGAAAAGGATGACTACGCTGCCATTATTCTGGCTGCAGCGGGCCTTAAACGTATGGGATGGGAAAGCAGAATCAGTCAGATTCTGGGCCCCGAAGATTGCATGTATGCTGTTGGGCAAGGAGCACTGGCAGTGGAAGTCAGAGCACAAGATAAAGACATCCTGGAAATGGTGTCTGTCTTGCACCATCCAGACACAGTGCTGCGGTGCATCTCAGAGAGAGCTTTCCTCAAGCAGCTTGAAGGAGGCTGCAGTGTGCCCGTTGCTGTGCATACAGAAGTGAAAGGGTCCATGCTATATTTGACTGGAGCAGTTTATAGTTTGGATGGAGCTGATTGCTTGAAGGACACTATGCAAACGGTTGTGGAAATCAGCAACAAAGTGAGCGAGAGTGCACAGGAGTGTGTACACGTTGGAGTCACTGCCAACAACGTATCATCGTCGGCCCTTGATGCTGCGGAGAACCTGGGAATGGATCTGGCAAATGCTCTCCTTAACAAGGGGGCCAAAGACATTCTCACAACTGCCAGGAAACTAAATGATGCTCGCTAGCTGGCTTTTACACTTTGTGCACTGGAGTATTAGGCCTAATTTTGGAACCTTTGACATGCTGTTAACTTAACTTAAACTGTACACCTCAACTATATGCTCTGTAGCTGAATCTCTAGAGCTTAAATACAACCTTGATTGGCTGTGTAATCTGTGACTAAAAACAACTTCAGATACTATACCTCAGTGCCTCAGTTTAACAATGTGGCAGCTTTAGGTTTTTTTCTCAGCTGCATACACAAGACATTTCTACTGTTGTGACTATTGTATTGTCTCAGGCACCGATTTCTGGAAGAATTCATGCTTCCACTTATGATGTCAGACTGCTGTCTTCATCTATGAACCACTTGAAAAGGAGTTACTTTTCATATATtgccattgtttttaatgtagaactgaatatatttgatatgcaaggcatttttatttaacagcatatcctcagtttttaaaacataccatgcctttttaaatacagagtaTCTATTGATGAGAAACCAAGAGTTTGaatttggaaaaaagaaaattaagaaattacttggttttatatttatgcCGTAGTTTTCATCCCACAATGTGCCTTTAAGGTTTTAATTAACCAATCAATTGTTTCTAGAATGTTAACTTCTgcaattatcaaaaataaactgATCCCATTATTCCCTTCCCTCCA
>XM_043240352.1
GTGTTCTTGGTAGACGGAAGTATCGCTCCCGTCTAGGTCACGCAAAAATCGGGTCACGAGTTTGAGGTAGCTGTTGGGAATTCTCGAAACCATCCGTTCAACCAAAACAACTGTGCAAATGAGTGAAAAATCCTGACGATATAGGTCGGGGAACAGATCGTTCCACTTTAACAGCGGAGATGTCTGGGAACGTTAGTGCTTCTCAAGAAGGAAATGGCAATGTCAGTCGGGTTATTCGCATGGGAACAAGGAAGAGCCAGctGGCTCGCATTCAGACAGACAGCGTGGCCGGCACCCTGAAAGAGCTTTATCCAGATGTTCATCTAGAAATAGTTGCCATGTCTACAATTGGGGACAAAATCCTGGACACCGCATTATCAAAGATTGGCGAAAAGAGCCTCTTTACCAAAGAGCTGGAGAATGCACTCGAGAGGAATGAAGTGGATATTGTGGTGCACTCTCTTAAGGATTTACCTACCTCATTGCCTCCTGGATTCACTATTGGAGCCATTCTTCAGAGAGAAAATCCCCATGATGCAGTGGTGCTTCATCCAAAGAATGCTGGACTTACCCTAGACAGCTTGCCAGAGAAGAGtgtgattGGCACAAGTTCACTTCGAAGAGCAGCTCAGCTGAAGAAACGATTCCCTCAACTAGAGTTTGAAAATATTAGAGGGAACCTAAACACCCGTCTGAAGAAGCTGGATGAAAAGGATGACTACGCTGCCATTATTCTGGCTGCAGCGGGCCTTAAACGTATGGGATGGGAAAGCAGAATCAGTCAGATTCTGGGCCCCGAAGATTGCATGTATGCTGTTGGGCAAGGAGCACTGGCAGTGGAAGTCAGAGCACAAGATAAAGACATCCTGGAAATGGTGTCTGTCTTGCACCATCCAGACACAGTGCTGCGGTGCATCTCAGAGAGAGCTTTCCTCAAGCAGCTTGAAGGAGGCTGCAGTGTGCCCGTTGCTGTGCATACAGAAGTGAAAGGGTCCATGCTATATTTGACTGGAGCAGTTTATAGTTTGGATGGAGCTGATTGCTTGAAGGACACTATGCAAACGGTTGTGGAAATCAGCAACAAAGTGAGCGAGAGTGCACAGGAGTGTGTACACGTTGGAGTCACTGCCAACAACGTATCATCGTCGGCCCTTGATGCTGCGGAGAACCTGGGAATGGATCTGGCAAATGCTCTCCTTAACAAGGGGGCCAAAGACATTCTCACAACTGCCAGGAAACTAAATGATGCTCGCTAGCTGGCTTTTACACTTTGTGCACTGGAGTATTAGGCCTAATTTTGGAACCTTTGACATGCTGTTAACTTAACTTAAACTGTACACCTCAACTATATGCTCTGTAGCTGAATCTCTAGAGCTTAAATACAACCTTGATTGGCTGTGTAATCTGTGACTAAAAACAACTTCAGATACTATACCTCAGTGCCTCAGTTTAACAATGTGGCAGCTTTAGGTTTTTTTCTCAGCTGCATACACAAGACATTTCTACTGTTGTGACTATTGTATTGTCTCAGGCACCGATTTCTGGAAGAATTCATGCTTCCACTTATGATGTCAGACTGCTGTCTTCATCTATGAACCACTTGAAAAGGAGTTACTTTTCATATATtgccattgtttttaatgtagaactgaatatatttgatatgcaaggcatttttatttaacagcatatcctcagtttttaaaacataccatgcctttttaaatacagagtaTCTATTGATGAGAAACCAAGAGTTTGaatttggaaaaaagaaaattaagaaattacttggttttatatttatgcCGTAGTTTTCATCCCACAATGTGCCTTTAAGGTTTTAATTAACCAATCAATTGTTTCTAGAATGTTAACTTCTgcaattatcaaaaataaactgATCCCATTATTCCCTTCCCTCCA

Function


symbol description
hmbsa Predicted to enable hydroxymethylbilane synthase activity. Predicted to be involved in heme biosynthetic process. Predicted to act upstream of or within peptidyl-pyrromethane cofactor linkage and porphyrin-containing compound biosynthetic process. Predicted to be active in cytoplasm. Is expressed in intermediate mesoderm. Human ortholog(s) of this gene implicated in acute intermittent porphyria and sickle cell anemia. Orthologous to human HMBS (hydroxymethylbilane synthase).

NR:

description
porphobilinogen deaminase isoform X1

GO:

id name namespace
GO:0018160 peptidyl-pyrromethane cofactor linkage biological_process
GO:0033014 tetrapyrrole biosynthetic process biological_process
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043240349.1 False 1868 mRNA 0.43 14 8203420 8209312
XM_043240350.1 True 1945 mRNA 0.43 14 8203420 8210189
XM_043240351.1 False 1850 mRNA 0.43 14 8203420 8209312
XM_043240352.1 False 1926 mRNA 0.43 14 8203420 8210188
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Neighbor


gene id symbol gene type direction distance location
dpagt1 dpagt1,LOC107587348,LOC107717886,LOC107597531,LOC107722798 coding downstream 28063 8171423 ~ 8175357 (-)
LOC122345805 hinfp,LOC107677425 coding downstream 32793 8164171 ~ 8170627 (-)
abcg4a abcg4a,abcg4,LOC107717882,LOC107722792,LOC107677424,LOC107587350,LOC108429752 coding downstream 48640 8138108 ~ 8154780 (-)
pdzd3b LOC107598091,LOC107722765,LOC107677407,LOC107587439,LOC107664508 coding downstream 66813 8131517 ~ 8136607 (-)
atp5l atp5l,LOC107664523,LOC107597515,LOC107587353,LOC107722787,LOC107677432 coding downstream 72248 8129121 ~ 8131172 (-)
stk36 stk36,LOC107598122,LOC107722762,LOC107717884 coding upstream 61760 8271949 ~ 8282158 (-)
c5h11orf53 zgc:158412,cunh11orf53,LOC107597648,LOC107677422,LOC107722790,LOC107587338,LOC107717870 coding upstream 72203 8282392 ~ 8287689 (-)
adamts15a adamts15a,LOC107681261,LOC107717868,LOC107722794,LOC107677442,LOC107587336 coding upstream 159383 8369572 ~ 8386394 (-)
ubash3ba ubash3ba,ubash3b,LOC107709710,LOC107597727,LOC107677436,LOC107722770,LOC108259961 coding upstream 301413 8511602 ~ 8537027 (-)
f11r.1 LOC107597734,LOC107722768,LOC107709707,LOC107677438,LOC107681232,LOC107587332 coding upstream 327503 8537692 ~ 8543385 (-)
G34310 LOC107722772,LOC107587343,LOC107717878,LOC107597552 non-coding downstream 3338 8199230 ~ 8200082 (-)
G34290 NA non-coding downstream 102720 8100486 ~ 8100700 (-)
G34276 NA non-coding downstream 189483 8013686 ~ 8013937 (-)
G34275 NA non-coding downstream 189869 8013347 ~ 8013551 (-)
G34265 NA non-coding downstream 266049 7936511 ~ 7937371 (-)
G34309 NA non-coding upstream 6774 8216963 ~ 8218476 (-)
G34315 NA non-coding upstream 45670 8255859 ~ 8262919 (-)
G34332 atf5a,LOC107717872,LOC107722784,LOC107587340,LOC107597628,LOC107677421 non-coding upstream 56904 8267093 ~ 8270648 (-)
G34336 NA non-coding upstream 79710 8289899 ~ 8290183 (-)
G34374 NA non-coding upstream 211333 8421522 ~ 8425502 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other downstream 39394 8160877 ~ 8164026 (-)
si:dkey-220k22.3 NA other downstream 481662 7718565 ~ 7721758 (-)
LOC122345606 LOC107712378 other downstream 491596 7706970 ~ 7711824 (-)
G33998 LOC108444092 other downstream 806267 7382346 ~ 7397153 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 1260217 6922846 ~ 6943203 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 201693 8411882 ~ 8414806 (-)
timm8b timm8b,LOC107717885,LOC107598437 other upstream 219511 8429700 ~ 8431586 (-)
LOC122345093 NA other upstream 464040 8674229 ~ 8677718 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other upstream 719281 8929470 ~ 8930053 (-)
vamp5 LOC107594989,LOC107681225 other upstream 1005309 9215498 ~ 9220528 (-)

Expression


hmbsa(hmbsa,LOC107717875,LOC107722788,LOC107597563,LOC107587344) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 200.
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hmbsa(hmbsa,LOC107717875,LOC107722788,LOC107597563,LOC107587344) Expression in each Bioproject

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hmbsa(hmbsa,LOC107717875,LOC107722788,LOC107597563,LOC107587344) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 800.
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Co-expression Network