Item | Value |
---|---|
gene id | hmbsa |
gene name | hmbsa,LOC107717875,LOC107722788,LOC107597563,LOC107587344 |
gene type | coding |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056703.1 |
NCBI id | CM032072.1 |
chromosome length | 32833783 |
location | 8203420 ~ 8210189 (-) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
hmbsa | Predicted to enable hydroxymethylbilane synthase activity. Predicted to be involved in heme biosynthetic process. Predicted to act upstream of or within peptidyl-pyrromethane cofactor linkage and porphyrin-containing compound biosynthetic process. Predicted to be active in cytoplasm. Is expressed in intermediate mesoderm. Human ortholog(s) of this gene implicated in acute intermittent porphyria and sickle cell anemia. Orthologous to human HMBS (hydroxymethylbilane synthase). |
description |
---|
porphobilinogen deaminase isoform X1 |
id | name | namespace |
---|---|---|
GO:0018160 | peptidyl-pyrromethane cofactor linkage | biological_process |
GO:0033014 | tetrapyrrole biosynthetic process | biological_process |
GO:0004418 | hydroxymethylbilane synthase activity | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043240349.1 | False | 1868 | mRNA | 0.43 | 14 | 8203420 | 8209312 |
XM_043240350.1 | True | 1945 | mRNA | 0.43 | 14 | 8203420 | 8210189 |
XM_043240351.1 | False | 1850 | mRNA | 0.43 | 14 | 8203420 | 8209312 |
XM_043240352.1 | False | 1926 | mRNA | 0.43 | 14 | 8203420 | 8210188 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
dpagt1 | dpagt1,LOC107587348,LOC107717886,LOC107597531,LOC107722798 | coding | downstream | 28063 | 8171423 ~ 8175357 (-) |
LOC122345805 | hinfp,LOC107677425 | coding | downstream | 32793 | 8164171 ~ 8170627 (-) |
abcg4a | abcg4a,abcg4,LOC107717882,LOC107722792,LOC107677424,LOC107587350,LOC108429752 | coding | downstream | 48640 | 8138108 ~ 8154780 (-) |
pdzd3b | LOC107598091,LOC107722765,LOC107677407,LOC107587439,LOC107664508 | coding | downstream | 66813 | 8131517 ~ 8136607 (-) |
atp5l | atp5l,LOC107664523,LOC107597515,LOC107587353,LOC107722787,LOC107677432 | coding | downstream | 72248 | 8129121 ~ 8131172 (-) |
stk36 | stk36,LOC107598122,LOC107722762,LOC107717884 | coding | upstream | 61760 | 8271949 ~ 8282158 (-) |
c5h11orf53 | zgc:158412,cunh11orf53,LOC107597648,LOC107677422,LOC107722790,LOC107587338,LOC107717870 | coding | upstream | 72203 | 8282392 ~ 8287689 (-) |
adamts15a | adamts15a,LOC107681261,LOC107717868,LOC107722794,LOC107677442,LOC107587336 | coding | upstream | 159383 | 8369572 ~ 8386394 (-) |
ubash3ba | ubash3ba,ubash3b,LOC107709710,LOC107597727,LOC107677436,LOC107722770,LOC108259961 | coding | upstream | 301413 | 8511602 ~ 8537027 (-) |
f11r.1 | LOC107597734,LOC107722768,LOC107709707,LOC107677438,LOC107681232,LOC107587332 | coding | upstream | 327503 | 8537692 ~ 8543385 (-) |
G34310 | LOC107722772,LOC107587343,LOC107717878,LOC107597552 | non-coding | downstream | 3338 | 8199230 ~ 8200082 (-) |
G34290 | NA | non-coding | downstream | 102720 | 8100486 ~ 8100700 (-) |
G34276 | NA | non-coding | downstream | 189483 | 8013686 ~ 8013937 (-) |
G34275 | NA | non-coding | downstream | 189869 | 8013347 ~ 8013551 (-) |
G34265 | NA | non-coding | downstream | 266049 | 7936511 ~ 7937371 (-) |
G34309 | NA | non-coding | upstream | 6774 | 8216963 ~ 8218476 (-) |
G34315 | NA | non-coding | upstream | 45670 | 8255859 ~ 8262919 (-) |
G34332 | atf5a,LOC107717872,LOC107722784,LOC107587340,LOC107597628,LOC107677421 | non-coding | upstream | 56904 | 8267093 ~ 8270648 (-) |
G34336 | NA | non-coding | upstream | 79710 | 8289899 ~ 8290183 (-) |
G34374 | NA | non-coding | upstream | 211333 | 8421522 ~ 8425502 (-) |
si:ch211-117m20.4 | si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 | other | downstream | 39394 | 8160877 ~ 8164026 (-) |
si:dkey-220k22.3 | NA | other | downstream | 481662 | 7718565 ~ 7721758 (-) |
LOC122345606 | LOC107712378 | other | downstream | 491596 | 7706970 ~ 7711824 (-) |
G33998 | LOC108444092 | other | downstream | 806267 | 7382346 ~ 7397153 (-) |
usp20 | usp20,LOC107691016,LOC107693839,LOC107710745 | other | downstream | 1260217 | 6922846 ~ 6943203 (-) |
G34372 | zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 | other | upstream | 201693 | 8411882 ~ 8414806 (-) |
timm8b | timm8b,LOC107717885,LOC107598437 | other | upstream | 219511 | 8429700 ~ 8431586 (-) |
LOC122345093 | NA | other | upstream | 464040 | 8674229 ~ 8677718 (-) |
G34580 | LOC107681240,LOC107709820,LOC107560234,LOC107715750 | other | upstream | 719281 | 8929470 ~ 8930053 (-) |
vamp5 | LOC107594989,LOC107681225 | other | upstream | 1005309 | 9215498 ~ 9220528 (-) |