si:dkey-174n20.1 (si:dkey-174n20.1,LOC107696056,LOC107741298,LOC108255501,LOC108444311,LOC105893868)


Basic Information

Item Value
gene id si:dkey-174n20.1
gene name si:dkey-174n20.1,LOC107696056,LOC107741298,LOC108255501,LOC108444311,LOC105893868
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12510566 ~ 12513965 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240361.1
CTGTACGTGGCTAAAGGCTACAGGATCAGTCTGCAAACATAGTCTTCTGCAtcacgtttttaaaatgaacggTCCTTGAAACCAAATGAACAATTGCATGCTATATTTTCCTTTGAATGGGCTAAAGGTGTGAGCTAAAAAGCGGCGTTAGCTTGCTAGAGGTCAGTTTGTCTTGTGCTGGTTTACAGGCTAGCAGAAAATGTACctgttatacattatattttccgcacttttgtgctttttgatattaaaatggcTGAAACGGAGAAAGTATTGCATGGACGTGAAGAGGTTAGATGGAAAAACGGTTCTTATAACTGGTGGGAACGCTGGGATCGGGAAGGAGACGGCTGTGTTGCTGGCTTTGCGAGGAGCTCGCGTGATCGTCGCCTGCAGGGATGAGGAGAAAGCCAGGAAAGCCGTTCGAGAGATCAAAGCAAGGAGCCACAATATGAATGTGCTGTATATGGAGGTCGACCTGGCCAACATGAGGTCTATACGAGAGTTCAGCAAAGCCTTCTTACAAAAGGAGAAGCGGCTGGATATTCTGATCAATAATGCGGGCATGCCCAGCGTCCTCGACTGGACAGATGATGATTTCTCCATGTGCTTTGGTGTTAACCACCTTGGCCACTTCTTACTGACCAACCTTCTTCTCCCACGGCTAAAAGAGAGTTCACCGAGCAGAGTAATAAATCTCACCTGCTCCAGCTACAAGTACCAGAAGCTGGACTTCCAAGATCTCAACTACAACCTGTTTCCGTTCTTCACCTACTGCCGCAGCAAGCTGGCCAACATTTACTTCACACAGGAGCTCGCTCGCATGCTGGAGGGGAAAGGAGTGACAGCGTATGCCGTTCACCCtgGTTACGTTCAGAGTAACTGGACCTGCCACTACTCCGTCTTGTTCCGGATCCTGGTGCAGGTGGtgatgttcatgttttttgtttcgTGCGAGGCTGGGGCACAGACGGTGGTCTACTGCGCCGTGTCAGACGACGTGCTCGAGCACAACGGAGGATATTTCACTGATTGTCAGCCGGCTCACCTTAGAGCTTTTGCTAGAGATTCTGGAGTAGCAAAAAAACTTTGGGAGGCCAGCGAGAGACTAGTTAAATTGGCCTGACAACAGTTAACAGtgctttttgtttgcatgtttgaTAAAACAGATTCTCATGTTATTTATAGAAAGCCATGTTTTGGTTTGTAAGAATGCGATATTTATGACACATTTTGTGTGAGTTGTATGtgctgttatttatataatgattgGCATGGTTTTTAACATGCAGTATCGAATTACCCTTGTTttcatcaaatgtttttaattagtaaagaATGTAAATTGGTCACCGCAAATTCCATTTAAGATGGAGGGTAgctatttataaatgcaaactAATCAAAGCCTGAAAGCAAACAAATCTAGCAGAATTACAAAGGTTCTATTAATGCATTTGTCttatgcttttatccaaagcaatttacatttaattttgcattcatttgagCGCTCCATGTCAAAGTTGaaatttttcacacaaaaaaataaatacaaaggaaAAACCA

Function

NR:

description
retinol dehydrogenase 11-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004022 alcohol dehydrogenase (NAD+) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240361.1 True 1569 mRNA 0.43 4 12510566 12513965

Neighbor

gene id symbol gene type direction distance location
hs3st1l2 hs3st1l2,LOC107557106,LOC107741295,LOC107743333,LOC107654638,LOC107663220,LOC107578102 coding downstream 82184 12412341 ~ 12428382 (-)
cds2 cds2,LOC107597267,LOC107654641,LOC107741205,LOC107663217 coding downstream 100898 12396282 ~ 12409668 (-)
arhgap25 LOC107741203,LOC107557123,LOC107663229,LOC107654642,LOC107743332,LOC107597266 coding downstream 116524 12381364 ~ 12394042 (-)
LOC122345273 NA coding downstream 146851 12356836 ~ 12363715 (-)
LOC122344659 NA coding downstream 236928 12272217 ~ 12273638 (-)
limk2 limk2,LOC107743341,LOC107654635,LOC107696070,LOC107741211 coding upstream 26319 12540284 ~ 12560679 (-)
LOC122345379 NA coding upstream 126412 12640377 ~ 12642522 (-)
cmklr1 LOC107743349,LOC107597353,LOC107654611,LOC107741300,LOC107696054,LOC107595970 coding upstream 128691 12642656 ~ 12644497 (-)
LOC122345863 NA coding upstream 154985 12668950 ~ 12673658 (-)
sart3 sart3,LOC107654630,LOC107597276,LOC107741219,LOC107595944 coding upstream 171093 12685058 ~ 12701945 (-)
G35923 NA non-coding downstream 59801 12448214 ~ 12450765 (-)
G35922 LOC107696053,LOC107654639,LOC107743336,LOC107595973 non-coding downstream 65346 12443787 ~ 12445220 (-)
G35812 arhgap25,LOC107597266,LOC107743332,LOC107654642 non-coding downstream 253754 12255480 ~ 12256812 (-)
G35805 NA non-coding downstream 261858 12226918 ~ 12248708 (-)
G35804 NA non-coding downstream 263057 12228582 ~ 12247509 (-)
G35949 NA non-coding upstream 18425 12532390 ~ 12537802 (-)
LOC122345380 NA non-coding upstream 88251 12602216 ~ 12606938 (-)
G35966 wscd2,LOC107597274,LOC107743343,LOC107696066,LOC107595945 non-coding upstream 123225 12637190 ~ 12639377 (-)
LOC122345905 NA non-coding upstream 366096 12880061 ~ 12884157 (-)
G36004 fbp1b,LOC107718665,LOC107655925,LOC107596168,LOC107757529,LOC107596723 non-coding upstream 399661 12913626 ~ 12916814 (-)
G35936 NA other downstream 4608 12501914 ~ 12505958 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 190881 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 341156 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 694622 11795656 ~ 11815944 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other downstream 857939 11583780 ~ 11652627 (-)
G36047 NA other upstream 539879 13053844 ~ 13054857 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 1065096 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 1140329 13654294 ~ 13699226 (-)
G36298 NA other upstream 1203159 13717124 ~ 13718543 (-)
G36336 NA other upstream 1303777 13817742 ~ 13818942 (-)

Expression


Co-expression Network