nf2a (nf2,nf2a,LOC107726729,LOC107599150,LOC108431713)


Basic Information

Item Value
gene id nf2a
gene name nf2,nf2a,LOC107726729,LOC107599150,LOC108431713
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1224554 ~ 1256414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240420.1
aaaaaacaatgacacgAAACCACAGGTTAGCCTAAACAAGCGTACGTGAACATCTAAAATGTTGTGAAGTCGTGTAAAAGTTGCTACAGGAGTGCATACTTGAGTGTTACGCTTAATGAAGCTTTAGAGGAAGTGAATAGGGGATCCAACTTCTAGTTACCAGTTAACGCTGGTGGCTTGACATCGTCCTGCTTTTAGAGATGCACTTTAATCACATTTTGTTACGTTGGCCAGTAATGCTAAATTGTAGCTTTTAACCAGAGATCAAATCTGCTGCGTTTCATCACAAGCTATGCTTCAGGTAGAGAGTTAGTATACCGGTTTATGCTGTTTCTAAAGAGGAGAAAGCCTTCCCATCCGTTATGGCAAGTGTCCTTGCATCAAAAATGGGTCTCAGCTCCCTTCGAAGGAAACATGCCAAAACCTTCAACGTCACAGTCGTTACAATGGATGCAGACTTGGAGTTCAGCTGTGAGCTGAAGTGGAAAGGAAAGGATCTGTTTGAACTTGTGTGCCGGACACTGGGACTCAGGGAGACCTGGTTTTTTGGTCTGCAGTATGACGTCAAAGACACTGTGGCGTGGCTGAAAATGGACAAGAAGGTTTTGGATCATGATATGCCCAAAGAAGAGCCCATAGTGTTTCATTTCCTGGCCAAGTTTTACCCAGAGAATGTTGAAGAAGAGCTGGTGCAAGACATAACACAGCAACTCTTCTTCCTGCAGGTAAAGAGGAGTATATTAGAGGAGGAGATATACTGTCCACCCGAGGCTTCGGTGCTGTTAGCCTCTTATGCCGTCCACGCTAAGTATGGTGATTATGACCCTAATGTCCACAAGCCGGGCTTCCTATCCCAAGAGGAGCTGCTACCaaagagaGTTATTAATCTGTACCAGATGACTGCAGAGATGTGGGAGGAGAGAATCACGGTCTGCTACGCTGAGCACAGGGGCAGAACCAGAGATGAAGCTGAGATGgagtatttaaaaatagctcAGGATCTGGAGATGTATGGGGTCAATTACTTTTCCATTAGGaatAAAAAGGGAACCAGCTTACTGCTAGGTGTGGATGCTTTGGGCCTTCACATTTATGACCCGAGTAACAAACTGACGCCCAAAATCTCTTTTCCCTGGAATGAGATCAGAAACATCTCGTACAGTGATAAAGAGTTTGCCATTAAACCCTTGGATAAGAGGGCAGATGTCTTCAAATTCAACTCCTCAAAACTCAGAGTCAATAAACTGATTCTTCAGCTGTGCATCGGGAACCATGATCTCTTCATAAGGAGACGCAGAGTTGATTCGCTGGAAGTCCAGCAGATGAAGATGCAGGCTAGAGAAGAAAAAGCTCGCAAACAGATGGAGCGTCAGAGGTTGGAGAGGGAGAAACAGTTGCGTGAGGAGGCAGAAAGAGCTCGTGATGAACTGCAGAGGAGACTGATTCAGTTACAGGACGAAGCTCACATGGCCAATGAAGCACTGTTACGCTCGGAGGAGACTGCAGATCTGTTGGCGGAAAAGGCACAAATCGCTGAGGAGGAGGCCAAGCTGTTGGCTCAGAAAGCGGCCGAGGCTGAACAGGAGATACAGCGTATTAAGGTGACAGCCATTCGCTCCGAGGAGGAGAAGAGACTCATGGAACAGAAGATGCTAGAGGCTGAGATGCTTGCACTCAAGATGGCAGAAGAGTCTGAAAGGAGGGCGAAAGAAGCCGACCAGCTGAAACAGGACCTACAGGAGGCAAGAGAATCGGAGCGCAAAGCCAAAAACAAACTACTTGAAATCACCAGTAAATCAGCCTACTCGCCTGTGCCGATGTCTGCCAACGCTCTTCCTCCTGATGGCCCGAACTTCAACTTCAGCATGGAGAACCTGAGTTTTGACTTCAAAGACACAGACATGAAACGTCTGTCCATGGAGATCGAGAAGGAGAAGGTTGAGTATATGGAGAAGAGCAAACACCTTCAGGAGCAGCTAAATGAACTGAAGACTGAGATTGAGTCATTAAAACTAAAGGAGCGAGAAACACCTCTAGACATTCTACATAATGAGAACACCGAGAAAGGCACCAGCAAGCAGAGCAACTTTAAGAAGCTCACTCTACAAAGCACCAAATCCAGAGTGGCCTTCTTCCAGGAGCTCTAGCCATCCAGACGCTTTGGACTAGTGTTTGAATGTGTTGACAATGTCTTGGGTTTTTATCACGTTCCTGACAGGCTGTGACTCATTCCTCTATGAACCTAGCACGCTCTGGTGATGAAGAATGTATACGTGGCTAAAGTTTACATTACACTAAGAGGACCAAACTCTCACTAGACAGAACTACAGAGTGGAGTGGAGCTTTTCAGAccgccacacacacaccaacataaACTCATTCACATACAGAGACACACTACACGTTGTTTCCCAATATCCTTTTATCTGCAGGAGGTCAGAATCCCATTATGAAGACACTACGGTTAAGCAGCGTACACACACTGACAACATATAACATTGCACTGCATCCTAAATCCATCTCTCCGGTTACACAGCAGATATCTCGGTCTCTCGATCAATACGTGTCAGAATAATTGGCTAAAGCAGTGGTATTGCACCCTTGTGCCGTATTAGTTCgtgagtttgttttgtttggggtCCAATATGGAGCTGTCTGGTCGTTCATAAAGATTGTATTAAACCTAATTGTTACAGTATAAAAGAGTTTACTTCCTCTCAGAGGATAGCTTAGCACAGTATATTTTAGGGAAAGAAAACCTTTTGGGATCACACCGTTTGGAAGACACATGTGAAATATTTGGATTTCGTTTAACTGTTTACTccattttacaatgttttaaagaatttgaatatatttttaaaaatgtttttgtgcagagGAATAAATGAACGGAAATGATCTTAAA
>XM_043240421.1
CGAAGTTTCAGCTGTAGTTTTGTTTGTTGGCCTGAAAGAGACAAACCtgcggctgtgtgtgtgtgtgtgtcaggtgtttAAGCGGGcgtgaatcacacacacactgcgggAAATCAGCTGTTTCTGCGACTCGACCGGCTTAATGAAGCTTTAGAGGAAGTGAATAGGGGATCCAACTTCTAGTTACCAGTTAACGCTGGTGGCTTGACATCGTCCTGCTTTTAGAGATGCACTTTAATCACATTTTGTTACGTTGGCCAGTAATGCTAAATTGTAGCTTTTAACCAGAGATCAAATCTGCTGCGTTTCATCACAAGCTATGCTTCAGGTAGAGAGTTAGTATACCGGTTTATGCTGTTTCTAAAGAGGAGAAAGCCTTCCCATCCGTTATGGCAAGTGTCCTTGCATCAAAAATGGGTCTCAGCTCCCTTCGAAGGAAACATGCCAAAACCTTCAACGTCACAGTCGTTACAATGGATGCAGACTTGGAGTTCAGCTGTGAGCTGAAGTGGAAAGGAAAGGATCTGTTTGAACTTGTGTGCCGGACACTGGGACTCAGGGAGACCTGGTTTTTTGGTCTGCAGTATGACGTCAAAGACACTGTGGCGTGGCTGAAAATGGACAAGAAGGTTTTGGATCATGATATGCCCAAAGAAGAGCCCATAGTGTTTCATTTCCTGGCCAAGTTTTACCCAGAGAATGTTGAAGAAGAGCTGGTGCAAGACATAACACAGCAACTCTTCTTCCTGCAGGTAAAGAGGAGTATATTAGAGGAGGAGATATACTGTCCACCCGAGGCTTCGGTGCTGTTAGCCTCTTATGCCGTCCACGCTAAGTATGGTGATTATGACCCTAATGTCCACAAGCCGGGCTTCCTATCCCAAGAGGAGCTGCTACCaaagagaGTTATTAATCTGTACCAGATGACTGCAGAGATGTGGGAGGAGAGAATCACGGTCTGCTACGCTGAGCACAGGGGCAGAACCAGAGATGAAGCTGAGATGgagtatttaaaaatagctcAGGATCTGGAGATGTATGGGGTCAATTACTTTTCCATTAGGaatAAAAAGGGAACCAGCTTACTGCTAGGTGTGGATGCTTTGGGCCTTCACATTTATGACCCGAGTAACAAACTGACGCCCAAAATCTCTTTTCCCTGGAATGAGATCAGAAACATCTCGTACAGTGATAAAGAGTTTGCCATTAAACCCTTGGATAAGAGGGCAGATGTCTTCAAATTCAACTCCTCAAAACTCAGAGTCAATAAACTGATTCTTCAGCTGTGCATCGGGAACCATGATCTCTTCATAAGGAGACGCAGAGTTGATTCGCTGGAAGTCCAGCAGATGAAGATGCAGGCTAGAGAAGAAAAAGCTCGCAAACAGATGGAGCGTCAGAGGTTGGAGAGGGAGAAACAGTTGCGTGAGGAGGCAGAAAGAGCTCGTGATGAACTGCAGAGGAGACTGATTCAGTTACAGGACGAAGCTCACATGGCCAATGAAGCACTGTTACGCTCGGAGGAGACTGCAGATCTGTTGGCGGAAAAGGCACAAATCGCTGAGGAGGAGGCCAAGCTGTTGGCTCAGAAAGCGGCCGAGGCTGAACAGGAGATACAGCGTATTAAGGTGACAGCCATTCGCTCCGAGGAGGAGAAGAGACTCATGGAACAGAAGATGCTAGAGGCTGAGATGCTTGCACTCAAGATGGCAGAAGAGTCTGAAAGGAGGGCGAAAGAAGCCGACCAGCTGAAACAGGACCTACAGGAGGCAAGAGAATCGGAGCGCAAAGCCAAAAACAAACTACTTGAAATCACCAGTAAATCAGCCTACTCGCCTGTGCCGATGTCTGCCAACGCTCTTCCTCCTGATGGCCCGAACTTCAACTTCAGCATGGAGAACCTGAGTTTTGACTTCAAAGACACAGACATGAAACGTCTGTCCATGGAGATCGAGAAGGAGAAGGTTGAGTATATGGAGAAGAGCAAACACCTTCAGGAGCAGCTAAATGAACTGAAGACTGAGATTGAGTCATTAAAACTAAAGGAGCGAGAAACACCTCTAGACATTCTACATAATGAGAACACCGAGAAAGGCACCAGCAAGCAGAGCAACTTTAAGAAGCTCACTCTACAAAGCACCAAATCCAGAGTGGCCTTCTTCCAGGAGCTCTAGCCATCCAGACGCTTTGGACTAGTGTTTGAATGTGTTGACAATGTCTTGGGTTTTTATCACGTTCCTGACAGGCTGTGACTCATTCCTCTATGAACCTAGCACGCTCTGGTGATGAAGAATGTATACGTGGCTAAAGTTTACATTACACTAAGAGGACCAAACTCTCACTAGACAGAACTACAGAGTGGAGTGGAGCTTTTCAGAccgccacacacacaccaacataaACTCATTCACATACAGAGACACACTACACGTTGTTTCCCAATATCCTTTTATCTGCAGGAGGTCAGAATCCCATTATGAAGACACTACGGTTAAGCAGCGTACACACACTGACAACATATAACATTGCACTGCATCCTAAATCCATCTCTCCGGTTACACAGCAGATATCTCGGTCTCTCGATCAATACGTGTCAGAATAATTGGCTAAAGCAGTGGTATTGCACCCTTGTGCCGTATTAGTTCgtgagtttgttttgtttggggtCCAATATGGAGCTGTCTGGTCGTTCATAAAGATTGTATTAAACCTAATTGTTACAGTATAAAAGAGTTTACTTCCTCTCAGAGGATAGCTTAGCACAGTATATTTTAGGGAAAGAAAACCTTTTGGGATCACACCGTTTGGAAGACACATGTGAAATATTTGGATTTCGTTTAACTGTTTACTccattttacaatgttttaaagaatttgaatatatttttaaaaatgtttttgtgcagagGAATAAATGAACGGAAATGATCTTAAA

Function

symbol description
nf2a Predicted to enable actin binding activity. Predicted to be located in cytoplasm; cytoskeleton; and plasma membrane. Human ortholog(s) of this gene implicated in familial meningioma; neurilemmomatosis; and neurofibromatosis 2. Orthologous to human NF2 (neurofibromin 2).
nf2 Predicted to enable actin binding activity. Involved in several processes, including Schwann cell proliferation; positive regulation of stress fiber assembly; and regulation of signal transduction. Located in several cellular components, including early endosome; nucleolus; and perinuclear region of cytoplasm. Implicated in familial meningioma; neurilemmomatosis; and neurofibromatosis 2. Biomarker of acoustic neuroma.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K16684 NF2; merlin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240420.1 False 2908 mRNA 0.44 18 1224554 1256211
XM_043240421.1 True 2935 mRNA 0.45 18 1224554 1256414

Neighbor

gene id symbol gene type direction distance location
LOC122344672 LOC107599169,LOC100329495,LOC107704423,LOC107750761,LOC107667614,LOC108443917,LOC102231850,LOC103134964,LOC102295583 coding downstream 49280 1145529 ~ 1175274 (-)
prodhb prodhb,LOC107730849,LOC107704395,LOC103359847,LOC107566477 coding downstream 148777 1053144 ~ 1075777 (-)
rtn4r rtn4r,LOC107704387,LOC107599164,LOC107573425,LOC107728899,LOC107667279 coding downstream 255801 898109 ~ 968753 (-)
chek2 chek2,LOC107653214,LOC107667648,LOC107567453,LOC107550275 coding downstream 566361 650073 ~ 658193 (-)
LOC122346115 LOC107751416,LOC107579531,LOC107653145,LOC107550279,LOC107667655,LOC107723311 coding downstream 602040 616780 ~ 622514 (-)
fbxw8 fbxw8,LOC107667234,LOC107599639,LOC107566479 coding upstream 15484 1271898 ~ 1287998 (-)
rnft2 rnft2,LOC107599619,LOC107704451,LOC107667191 coding upstream 35417 1291831 ~ 1307537 (-)
nipsnap1 nipsnap1,LOC107599167,LOC107653245,LOC107726724,LOC107599621,LOC107667606,LOC107755818 coding upstream 80749 1337163 ~ 1342053 (-)
nos1 nos1,LOC107599638,LOC107726721,LOC107668720 coding upstream 98945 1355359 ~ 1403124 (-)
ksr2 ksr2,LOC107599618 coding upstream 167990 1424404 ~ 1494687 (-)
G32292 NA non-coding downstream 172375 1051867 ~ 1052179 (-)
G32275 NA non-coding downstream 345412 877910 ~ 879142 (-)
LOC122344906 LOC107676118 non-coding downstream 401725 820190 ~ 822829 (-)
G32245 NA non-coding downstream 506144 718137 ~ 718410 (-)
G32239 NA non-coding downstream 519950 704234 ~ 704604 (-)
G32409 NA non-coding upstream 32864 1289278 ~ 1291763 (-)
G32440 NA non-coding upstream 256631 1513045 ~ 1513312 (-)
G32463 LOC107599159 non-coding upstream 280984 1537398 ~ 1539368 (-)
G32462 NA non-coding upstream 284812 1541226 ~ 1567149 (-)
G32486 pes,LOC107704970,LOC107741508 non-coding upstream 350011 1606425 ~ 1607747 (-)
wdr31 wdr31,si:ch73-266o15.4,LOC107653158,LOC107667323,LOC107751417 other downstream 593428 622514 ~ 631126 (-)
ddr2l ddr2l,LOC107704361,LOC107725118,LOC107550294,LOC107723312,LOC107667359,LOC108444179 other downstream 641459 556654 ~ 583095 (-)
kcnv2b atp5ib,atp5i,atp5ia,kcnv2b,LOC107703581,LOC107725101,LOC107704252,LOC107594594,LOC107723293 other downstream 836676 382052 ~ 387878 (-)
rictora rictora,LOC107704198,LOC107658248,LOC107567655,LOC107750288,LOC107594576,LOC107725140 other downstream 962883 239951 ~ 261671 (-)
G32104 LOC107725162,LOC107594575 other downstream 1188206 35777 ~ 36348 (-)
castor1 gatsl3,LOC107755828,LOC107726730,LOC107704487 other upstream 56190 1312604 ~ 1336187 (-)
lrrc74b lrrc74b,LOC107755819,LOC107667596,LOC107599620 other upstream 86192 1342606 ~ 1354414 (-)
ypel1 ypel1,YPEL1,ypelc,ypel2b,LOC103374080,LOC106586007 other upstream 416610 1673024 ~ 1694286 (-)
G32676 NA other upstream 710223 1966637 ~ 1967748 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other upstream 763682 2020096 ~ 2022922 (-)

Expression


Co-expression Network