crx (crx,LOC107596137,LOC107700239,LOC107757554,LOC107693445,LOC107548475,LOC107746366,LOC105892503)


Basic Information

Item Value
gene id crx
gene name crx,LOC107596137,LOC107700239,LOC107757554,LOC107693445,LOC107548475,LOC107746366,LOC105892503
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13573217 ~ 13575410 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240425.1
ATGATGTCCTACATAAAGCAGCCCCATTATGCTGTGAACGGGTTAACGCTGTCCGCCTCAGGAATGGACCTGCTCCACACCGCCGTCGGCTACCCAGcCACTCCAAGGAAGCAGCGACGGGAGCGCACTACCTTTACACGGACCCAGCTGGACATTTTAGAAGCCCTGTTCACCAAAACACGCTACCCAGACATATTCATGAGAGAAGAAGTGGCTCTGAAAATCAACCTTCCCGAGTCCAGAGTTCAGGTTTGGTTCAAGAACCGTCGCGCTAAATGCCgccaacagcagcagcagaccAGCGGTCAGCCCAAGCCCCGTCCCCCTTAAAAGAAGTCCTCTCCACCCCCTgagctgacctctgaccctggTGCCAGCTCCTCTGTGGTGGCTGCCCCCGCCCCAGCCGTGCCCCCTAGTGCCAGCGCAGGCACAGCACCAGTTTCTGTGTGGAGTCCCACCTCTCTATCCCCCCTTCCTGACCCATTGTGTGGCTCCGGCACACCCTGCGTGCAGCGCCCTGCTCCCTATCCTATGAGCTACGGTCAGCCCTCCACCTATAGCCAGGGCTACAGCTCCTCTCCTTACTTCAGTGGATTGGATTGCAGCCCGTACCTTTCTCCCATGACCAGTCAGCTGTCCGCAAGTGGGGGCGCTCTCTCTCCCCTCACCGTGCCCTCCATGGGCGGCTCGCTCAGCCAGTCACCTTCTCTCTCCTCCCAAGGATACAGCACCTCCTCGCTGGGTTTCAGTTCCGTGGACTGCCTGGACTACAAGGACCAGCAGGCTTGGAAGCTCAACTTCAGCACAGTTGACTGCCTCGACCATAAATTCCAGGTGCTGTAGAAGAGAAAGTGGGCGAGTGAAGAAAAAGAACAGGAGGgaaggagaaggaggagaagaCGGATGAAGAGTAAACGAAACAAAACTGTTGCTTGAAATGCCGGAGACATTTAGATGATGAACAGGACTGAATCAGCAGGATTCAAGTGATCTCAGAGGT

Function

symbol description
crx Enables DNA binding activity. Acts upstream of or within eye photoreceptor cell development; negative regulation of retinal cell programmed cell death; and visual perception. Predicted to be active in nucleus. Is expressed in immature eye; neuroepithelial cell; photoreceptor cell; pineal complex; and visual system. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 7 and cone-rod dystrophy 2. Orthologous to several human genes including CRX (cone-rod homeobox).

NR:

description
PREDICTED: homeobox protein otx5-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0007601 visual perception biological_process
GO:0046671 negative regulation of retinal cell programmed cell death biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240425.1 True 1003 mRNA 0.56 3 13573217 13575410

Neighbor

gene id symbol gene type direction distance location
hnrnpl hnrpl,LOC107700238,LOC107693443,LOC107757553,LOC107548476 coding upstream 9353 13553998 ~ 13563864 (+)
srsf7a LOC107700237,LOC107746364,LOC107548478,LOC107757551,LOC107596141,LOC107693444 coding upstream 20800 13549020 ~ 13552417 (+)
slc8a2a slc8a2a,LOC107757550,LOC107693442,LOC107596143 coding upstream 25017 13531277 ~ 13548200 (+)
nccrp1 nccrp1,LOC107548479,LOC107757518,LOC107693441,LOC107596142,LOC107700228,LOC107746425 coding upstream 42355 13528351 ~ 13530862 (+)
mark4a mark4a,LOC107746361,LOC107596145,LOC107700234,LOC105006905,LOC107693438,LOC108444027 coding upstream 56033 13498184 ~ 13517184 (+)
gjd1a gjd1a,LOC107700241,LOC107548473,LOC107746368,LOC107710581,LOC107596136,LOC103027887,LOC108437049 coding downstream 13772 13589182 ~ 13600365 (+)
nfkbib nfkbib,LOC107548472,LOC107700243,LOC107693450,LOC107596135,LOC107710580,LOC107746369 coding downstream 33064 13608474 ~ 13612669 (+)
tppp2 tppp2,LOC107700244,LOC107548470,LOC107746373,LOC107596214,LOC107693436,LOC107710570 coding downstream 45400 13620810 ~ 13623529 (+)
LOC122345172 si:dkeyp-110c7.4,LOC107746371,LOC107700245,LOC107596213,LOC107683146 coding downstream 48437 13623847 ~ 13626422 (+)
tagln2 -,LOC107710578,LOC107700246,LOC107746372,LOC107548469,LOC107596134,LOC107693452 coding downstream 58416 13633826 ~ 13638853 (+)
G36140 NA non-coding upstream 51609 13519973 ~ 13521608 (+)
G36109 NA non-coding upstream 248834 13324033 ~ 13324383 (+)
LOC122345423 NA non-coding upstream 260565 13299755 ~ 13312652 (+)
G36062 NA non-coding upstream 464364 13108632 ~ 13108853 (+)
G35905 NA non-coding upstream 687283 12885331 ~ 12885934 (+)
G36168 NA non-coding downstream 72516 13647926 ~ 13648538 (+)
G36191 NA non-coding downstream 145375 13720785 ~ 13721566 (+)
G36198 NA non-coding downstream 156559 13731969 ~ 13732456 (+)
G36332 NA non-coding downstream 399122 13974532 ~ 13974759 (+)
G36405 NA non-coding downstream 423690 13999100 ~ 14000337 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 765866 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 867972 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 1044427 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1317545 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1630107 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 408687 13984097 ~ 13985706 (+)
G36495 NA other downstream 715010 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 724633 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 757613 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 772152 14347562 ~ 14349991 (+)

Expression


Co-expression Network