CI01000004_17320843_17323478


Basic Information

Item Value
gene id CI01000004_17320843_17323478
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 17320492 ~ 17323777 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_17320843_17323478.mRNA
TTTTAAAAGGAGAAGGCAAAAGGTTCAGAAAGAGGCCAAATTCATCAAGTTAATATCAGGTATGTTCTTGAAACATCTGTTTTGCTCACCAAGACTGGATTTATTTGATCAAAAATAGAGTAAACACTGTAATATTGTGAAAAATCATTACCCTTTGAAATAACTGTTTTGTAATAGTTATTCCTGTGATGCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTTAGTATCACATGATCCTTCAGAAATCATTCTAATATGATGATTTGCTGCTCAAGAAACATTAACAATGGATATATATATATATATTGTTTTGCCTTAAAGATCTAAAAAAAGATTTAGGGAAGACATGGCTCCCATCGCTTCTGATTTAACAGAGAAGAAGAGAAAGCAAATCTGTGCCTTGCTGGGGAATGTGGAACTGACTCTTCTCTACAAAGCTTCAGTCCATGGATATAACGCTTCTGCCTTCCACCAGCGATGTGACCATCAGGGCCCCACTTTACTTGTGGCCTACAACAGTTTAGGCTACATCTTTGGTGGATACACTAGTGTGGATTATGCTCAAAGTGACAAGAACATTTTTGATAAAGAAGCTTTTCTGTTTAATGTTCGAGGTTTAACCCCTGTTCAAATTAAAGTTAACGGATATATTGCACGTCTTGATGACGCTGGAGGACCTAACTTTTGCCAACAGTTGTACTTTTGCTACAACAACCAACCAGTTGTACATTACAAGCCACAACCAGGGAATTGGGGTCAGACATTCAATACTGAAAAGTTGTATGGGAATAACACTGAGCTGACTGAATGTGAGGTGTACAAAGTCAACCAGAGCCTTCAGGTCAGTTTCAAAGAGAAGCCATGGAGGAATATTCTTTGGACAGCTAAACGAAGAGAAGAGCTCATGGGATTGATCAGGAATCATAAACCCATGATGGCGTCCGTGAGTCGGGTCAGAATCCTAATGATTGGTCCTGTAGGTGCTGGAAAATCCAGTTTCTTCAACTCCATCAACTCCATCTTCATGGGTCATGTGACCAACAAAGCAGTATCAGGATCTGCAGGCACTAGTGTCACCACAAAGTTTCGCACATACCTACTGAAGGATGGTCGTGAGAGAAAGCCATTGCCATTTGTGTTGTGTGACACCATGGGACTTGAGGAGCAATCAGGTGCAGGGCTGGACATCGAGGACATCAGCAGCATCGTTCAAGGTCACGTACCGGACCGCTATAAATTCAACCCCAAAGCACCGTTTAAACCGGATGAGATCTCCAAACCTGCATCTTTAAAGGAGAGGATCCACTGTGTGGCGTACGTAATAGACGCCACAAAAATCTCCCTCATGTCCGACAAACTAGAAGAAAAACTCAGTTCTGTACGTAGTCAATTGAACTCACTGGAGATTCCTCAGATGGTCTTGATGACAAATGTAGATGAAACATGTCCTCATGTGAAAGATGACCTTGAAAATATTTATGCAAGTTCCTATATCAAAATGAAGGTGCAAGAGGTGAGCTCTCGGTTGGGTGTCCCGGTGTCTTGTGTGTTACCGGTGAAGAACTACAGCCAGGAGCTGGAGCTGGAGCTCAAATGTGATATTCTGCTTCTCTCCGCTCTACAGCAGATGCTTCGTTTGGCAGACGACTATCTGGATGATGTTGATACCATTTAGGCCATATAAAGTGCTGCATATGGGGTTTATACTTCTTGATCAGCACAAGGATTCATCTTAAGTCAGAAGATTATTCTCTTCTGTTTGTCCATTCTAGATGCTTCATAATCATACATAATATTACTTTAAGAAAATGATGGCAAATGCAAACAAAGTTCATATATCACTTACGCTGCTCATTACATTATAATCACTGTTGCGTTTTGTAGGTGCGATATTGCTGTGCCACGATCAGGTTTATACTAATACTAGAATGATGTGTTAGGACTACAATTCAAGATGCTAAATTCTGTAGCCTA

Function

NR:

description
LOC555512 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_17320843_17323478.mRNA True 1979 mRNA 0.41 7 17320492 17323777

Neighbor

gene id symbol gene type direction distance location
CI01000004_17214619_17236647 PTH1R, PTH1RA coding upstream 83818 17214619 ~ 17236674 (+)
CI01000004_17062704_17110319 CRHR2.S, CRHR2 coding upstream 210173 17062704 ~ 17110319 (+)
CI01000004_16869205_16944944 CLSTN2 coding upstream 375548 16869205 ~ 16944944 (+)
CI01000004_16812706_16814956 NA coding upstream 505424 16812706 ~ 16815068 (+)
CI01000004_16695941_16729500 NA coding upstream 590773 16695633 ~ 16729719 (+)
CI01000004_17368205_17412619 NA coding downstream 43870 17367647 ~ 17412936 (+)
CI01000004_17419825_17424299 MGC53997, TBB2A, TUBB2B.L, TUBB2, TUBB2A, TUBB2B coding downstream 96048 17419825 ~ 17424743 (+)
G35191 NA non-coding upstream 4628 17314869 ~ 17315864 (+)
G35183 NA non-coding upstream 6211 17313019 ~ 17314281 (+)
G35272 NA non-coding upstream 8665 17311487 ~ 17311827 (+)
G35271 NA non-coding upstream 14246 17306031 ~ 17306246 (+)
G35266 NA non-coding upstream 35439 17284486 ~ 17285053 (+)
G35185 NA non-coding downstream 4474 17328251 ~ 17338303 (+)
G34400 NA other upstream 295023 16971995 ~ 17025976 (+)
G33815 NA other upstream 1254028 16063415 ~ 16066464 (+)
G34220 NA other upstream 1380542 15939357 ~ 15939950 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 2228523 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 3283592 14035393 ~ 14039142 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location