LOC122345915 (hspb11,zgc:158640,LOC107746844,LOC107681463,LOC107719933,LOC107660270)


Basic Information

Item Value
gene id LOC122345915
gene name hspb11,zgc:158640,LOC107746844,LOC107681463,LOC107719933,LOC107660270
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16087941 ~ 16088913 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240449.1
ATGAGTTGGCTGCTACGCATCGGGGTTACCTGTTGCTTAGCAACTCAGATAGCCTCCGAGTGAAAATTCGTGCATCTAGCATATTTCTACACGTACATGTCTAAAACTCACGATGCTGGACGCTGCCTTAAGTTCATACGGAGCACAGGTCGTGCTGGCTACATCGAGCGAAGAGAATCACCCACCGGAAAACATCATCGACGGAAAAACAGAGACTTTCTGGATTTCAACTGGCATGTTTCCACAAGAGTTTATTATCCGCTTCCCAGACAATATGAAGATTTTCACTGTTTCCATTCTCAGTTACAACAttaaaagGCTAAGAATAGAAAAGGGCATATCAGACGATGCCGAGAAATTTGAAGTGGTTGCAGACACCGAGTTTGAGCACACAGAGAGCAGCCTACAGGCTAATGATATTTCTGTAAATGTATTGAATACGACACACTTACGGTTTCTCATACTGTCTGGATATGATCATTTTGTCTCTGTTCACAAAGTTAGTGTACAATCATGAGATAATCTCCATCTGCCATGTCTTTCTGTAAACTCACGTGAAGTAACCAAAGTGGAtcactgtatatttttcttaaataaacaacattctCCTAATTTCTATTAT

Function

symbol description
hspb11 Acts upstream of or within myosin filament organization. Is expressed in several structures, including adaxial cell; brain; horizontal myoseptum; pericardial region; and somite. Orthologous to human HSPB9 (heat shock protein family B (small) member 9).
zgc:158640 Predicted to act upstream of or within intraciliary transport. Predicted to be part of intraciliary transport particle B. Predicted to be active in centrosome and cilium. Orthologous to human HSPB11 (heat shock protein family B (small) member 11).

NR:

description
PREDICTED: intraflagellar transport protein 25 homolog

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0007155 cell adhesion biological_process

KEGG:

id description
K19369 HSPB11; heat shock protein beta-11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240449.1 True 622 mRNA 0.41 5 16087941 16088913

Neighbor

gene id symbol gene type direction distance location
nos2a nos2a,LOC107553584,LOC107719931 coding upstream 4186 16076241 ~ 16083755 (+)
si:dkey-40c11.2 LOC107680639,LOC107552538,LOC107746841 coding upstream 73526 15985786 ~ 16014415 (+)
rhobtb4 rhobtb2a,LOC107552568,LOC107680668,LOC107746840,LOC107676653,LOC107718339,LOC107553600 coding upstream 109193 15951062 ~ 15978748 (+)
wdr54 wdr54,LOC107746838,LOC107552569,LOC107718338,LOC107676672,LOC107680694 coding upstream 160572 15921758 ~ 15927369 (+)
aqp3a LOC107680708,LOC107746837,LOC107552570,LOC107718337,LOC107676667,LOC107553599 coding upstream 177063 15906315 ~ 15910878 (+)
tmem8b tmem8b,si:dkey-84j12.1,LOC107553610 coding downstream 55981 16144894 ~ 16251772 (+)
LOC122345865 si:dkey-114c15.7,LOC107597238,LOC107672487,LOC107733230,LOC107592265,LOC107748635 coding downstream 290442 16379355 ~ 16389644 (+)
LOC122345769 zmat4a,zmat4,LOC107594996,LOC107587306 coding downstream 311519 16400432 ~ 16409920 (+)
LOC122346216 fam101a,LOC107687957,LOC107553832,LOC107684501,LOC107576363 coding downstream 454922 16543835 ~ 16554564 (+)
edil3a edil3a,edil3,LOC107685241,LOC107669516 coding downstream 946882 17035795 ~ 17162890 (+)
G37123 NA non-coding upstream 33933 16053032 ~ 16054008 (+)
G37047 NA non-coding upstream 168656 15918506 ~ 15919285 (+)
G37038 NA non-coding upstream 227838 15859759 ~ 15860103 (+)
G36993 NA non-coding upstream 264190 15821892 ~ 15823751 (+)
G37024 NA non-coding upstream 272876 15814853 ~ 15815065 (+)
G37155 NA non-coding downstream 7072 16095985 ~ 16097005 (+)
G37260 NA non-coding downstream 571608 16660521 ~ 16660743 (+)
G37286 NA non-coding downstream 698917 16787830 ~ 16812417 (+)
G37291 NA non-coding downstream 738212 16827125 ~ 16827476 (+)
G37308 NA non-coding downstream 800284 16889197 ~ 16889977 (+)
G36640 NA other upstream 1367454 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 1435030 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 1737950 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 1750176 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 1782637 14300043 ~ 14305304 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 302884 16391797 ~ 16395562 (+)
G37227 NA other downstream 385795 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 397707 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 1275936 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 1437111 17526024 ~ 17527444 (+)

Expression


Co-expression Network