lhfpl2b (lhfpl2b,LOC107720278,LOC107587511,LOC107699725,LOC107756302,LOC107555493,LOC107703255)


Basic Information

Item Value
gene id lhfpl2b
gene name lhfpl2b,LOC107720278,LOC107587511,LOC107699725,LOC107756302,LOC107555493,LOC107703255
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19124324 ~ 19131332 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240461.1
ACTCCGCGAGGGGCTGGAGCAAAGGAGGCGGCGAGGAAACAACGAGAAAGTAGCTGAAGTGAGCAAGAACTTGTGTTGCTCCGGGACCAACGCCGAACTAGGAACCGTGACCCATAAACGAGGCCGTGCTGTGCGTTTTTCGATGTACTCCAGAGCTCGAAAGTTTCCAGGTTTCTGCCGTGGCTCTTCCCTTCTGGCGCGTGTCGCGTATCGTCAGAACACAGGAGATCCGCTCAAACACATCAGGAAGTTGAACGCTGATCGGCGAGCAGCCCGTTAAGTCCGCGCCGTGAAGatttGTTCGGTGTCAGTACATGGATACTCTCAGGACGGACCCTAGAGCTCAGGCGATCCTCTGTGGTGCCGTTTGAGGAGATCTGGTGCTGTTTTAGCTGTGATGATAGCACCACTGGACCTTGACTGACGTGCCTCAGCTGCTGCTTGAAGAAACCGCTACCTCTGAAGTGCCGGCGTAAAGGTTCTGCAGAATGTGTCACGTCATAGTCACATGCCGCTCTATGTTATGGACCTTGATGAGCATTGTGGTGGCATTTGCTGAGCTGGTGGCATTTATGAGCGCCGAATGGCTAGTGGGGTATCCAGATGGCTCTGAGTTCAACTTCACCATCACCGCTTCACACCGCAGCGACCAGCGCACCTTGGGCATTTATAACCGCTGCATCAAGGTGGCACAGCAGAAGGTGGTCCAGTGTGGGGCCTATGCCACAGACTTCATGGAAATAGCCAGTGGCTTCTGGCAGGCCACCGTTATATTTCTAGTCGTTGGAATATTTCTCCTATCCCTAGTGGCCATCCTTTCGGTTTTCAGCATGTGCTTCCAGAGCATCTTGAAGAAGAGCATATTCAACGTGTGTGGCCTGCTTCAGGGAATAGCAGGTCTATTCCTCATCCTCGGTCTGATGCTGTATCCTGCAGGCTGGGGCTCTAAGAAGGTGGTTGACTACTGTGGCCCGGATGCTTCCCCATATAAAGTGGGCCTGTGTTCTCTGGGCTGGGCTTTCTACACCGCAATAGGAGGCACTGTTCTCACTTTCATCTGTGCCATGTTTTCGGCCCAGGCTGAGATCGCCACCTCCAGCGATAAGGTCCAGGATGAGATTGAAGAGGGACGGAGTCTCATTTGTGTGCTGTGAGATGCGAACACAAACCACTCGGACgaaaaagaatcatttgtttTCCATGTTTACTGATTGAAATGACTATTGCATAAATGGGAATGTATTTCAGACCGGTTGGGTCTACCGATCAAGGACTTTATAGCGCATTTGCTTATGCCTTCTTACTCGCATGTCATCCTATCGCTGCATCGCCGTTACAAAGTATATGCATAACAcattctttttatgaaaaaaccttttgaaactaacaaatgcattaacattgtgtttgcaaacaaatgcattttatcagtAGTTTGATTTTGTGTTACTAAATTTTACGTGGACTTCTTACTAATAGCTGGAGCTAAGCAGTTGTTTATAGAATGGTATGCTAAAAAGAAGTATATGTTACTACCCTGTGATAGACCTAgtctctttaaatgtaaaataaaaaatgattatcgAATTTAAAAGGTGTTTGAGGCTCTTTCCGCCTCTAATTCACGGTGCACGTTCACTGAGAACTAACTGCCCGTATATGAGAAGCTGATTGCATGATACATTGAACTGTTTTTGAGTGCAGATATTTTTTCATCCATCAACAGTGGCTGACACGGCCAAATGGACTAAAAAGGACAAATAAAGTGCCTGTTGTAAAAGCGA

Function

symbol description
lhfpl2b Predicted to be active in membrane. Is expressed in central nervous system; midbrain hindbrain boundary neural keel; neural plate; pronephros; and yolk syncytial layer. Orthologous to human LHFPL2 (LHFPL tetraspan subfamily member 2).

NR:

description
PREDICTED: lipoma HMGIC fusion partner-like 2 protein

GO: NA

KEGG:

id description
K23893 LHFPL; LHFPL tetraspan subfamily member protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240461.1 True 1784 mRNA 0.47 3 19124324 19131332

Neighbor

gene id symbol gene type direction distance location
otpb otpb,otp,LOC107720233,LOC107587559,LOC107555478,LOC108423578 coding downstream 41246 19079743 ~ 19083078 (-)
entr1 LOC107720284,LOC107699695,LOC107587560,LOC107555476,LOC107703226 coding downstream 171589 18949562 ~ 18952735 (-)
snapc4 LOC107699680,LOC107720210 coding downstream 174965 18938322 ~ 18949359 (-)
card9 LOC107699720,LOC107756300,LOC107555475 coding downstream 186359 18932700 ~ 18937965 (-)
ccdc180 ccdc180,LOC107587542,LOC107579191 coding downstream 191743 18921427 ~ 18932581 (-)
homer1b homer1b,LOC107720277,LOC107699726,LOC107555494,LOC107703256,LOC108423652,LOC108255354 coding upstream 3040 19134372 ~ 19156518 (-)
serinc5 serinc5,LOC107756307,LOC107699732,LOC107555497,LOC107703261 coding upstream 64686 19196018 ~ 19216739 (-)
cdk7 cdk7,LOC107756278,LOC107720222,LOC107703229,LOC107699696 coding upstream 86403 19217735 ~ 19221166 (-)
LOC122345207 LOC107720271,LOC107699734,LOC107587503,LOC107756310,LOC107703263 coding upstream 165967 19297299 ~ 19313145 (-)
erap2 erap2,LOC107699735,LOC107756311,LOC107703265,LOC107720206 coding upstream 182816 19314148 ~ 19323539 (-)
G37774 NA non-coding downstream 1016 19123025 ~ 19123308 (-)
G37757 ckmt2b,ckmt2,LOC107720280,LOC107756255 non-coding downstream 48550 19068914 ~ 19075774 (-)
G37637 NA non-coding downstream 310553 18813564 ~ 18813771 (-)
G37571 NA non-coding downstream 732676 18373317 ~ 18391648 (-)
G37570 NA non-coding downstream 751074 18372208 ~ 18373250 (-)
G37776 NA non-coding upstream 1481 19132813 ~ 19133144 (-)
G37792 NA non-coding upstream 93020 19224352 ~ 19225429 (-)
G37799 NA non-coding upstream 150533 19281865 ~ 19282092 (-)
G37800 NA non-coding upstream 151045 19282377 ~ 19282691 (-)
G37801 NA non-coding upstream 155295 19286627 ~ 19286848 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 1773944 17346469 ~ 17350380 (-)
LOC122345693 NA other downstream 2264393 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 2411157 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 2491203 16596855 ~ 16633121 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other downstream 2745809 16376266 ~ 16378515 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other upstream 44131 19175463 ~ 19183978 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 733687 19865019 ~ 19935576 (-)
G38058 NA other upstream 920327 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 994257 20125589 ~ 20127390 (-)
LOC122345844 ppil3 other upstream 1263399 20394731 ~ 20396734 (-)

Expression


Co-expression Network