pes (pes1,pes,LOC107704970)


Basic Information

Item Value
gene id pes
gene name pes1,pes,LOC107704970
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1603813 ~ 1612548 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240467.1
AGGGTCCTACTGTCTTGGCTGACGTCACGCGAAACACGTGTGTTCGGAAGAGGCACGTTAGGACTGGATCTGTGCTGAGCtctatttgctttttattgcattagcttttaatttaggttttgccgagtaaaaaaaaactccgCTGTAATGGGCGGATTACAGAAGAAGAAGTATGAGAGTGGATCAGCCACTAACTATATCAGCAGGAATAGAGCCCGCAAGAAGCTGAGTCTGAGTCTGGCTGATTTCAGGCGCTTATGCATACTGAAGGGAATCTATCCTCATGAACCCAAACACAAAAAGAAGGTCAACAAGGGCTCGACAGCGCCTAGAACCTTCTACCTGCTGAAAGACATCCGCTTCCTCTTGCACGAGCCTATCGTTGGCAAGTTCAGGGAGTACAAGATTTTTGTGCGGAAACTGCGGAAAGCATATAGCAAGGCTGAGTGGAGCGGAGTGGAGAGAATAAAAGACAACAAACCTGTGTACAAACTGGACCACATCATCAAGGAGAGGTACCCCACGTTCATTGATGCtgtccgagatgtagatgatgCCCTTTctatgtgttttctgttttctactTTCGCTCGCACGGGAAAATGTCATGTTCAGACAATTCAGCTGTGCCGAAGACTTAGCGTTGAATGGATGAACTACATTATCTCCTCACGGTCCCTCAGAAAAgTTTTTCTTTCCATTAAAGGTATTTACTACCAAGCTGAGGTCCTGGGACAAACCATCACATGGATCATACCATATCAGTTTGCCCATGATCACCCCACAGATGTGGACTACAGAGTTATGGCCACATTTACAGAACTCTACACGACACTGCTTGGGTTCGTCAACTTCCGCCTTTACCAGACCCTCAACCTCGTCTACCCGCCCAAGCTTGATGGACAGGGAGAGTTCAACCTCAAAGCAGAGTTTGAAGAAGATTATGCCCTGGAATCAGAAAGCTATTCTGAGAAACTGTCAGCGTTGAGTGCCAGTCTGGCCCGTACGGTTCCTTCAGTGGAGGACGAGGAGGCAGAGCTGGACCATTTCCCAGTTGAAGGGGAAGACCTGGAGAAGATGGAGGCGAGAGAGAAGATCGAGCTGgagcaaaacaaacagatgaagCTCTTCGAAGGGCTGAAGTTTTTCCTAAACAGAGAAGTTCCCAGGGAATCGCTGGCTTTTGTCATCAGGTGTTTCGGTGGACAGGTGTCCTGGGATAAATCACTGTGCATCGGCAGCACTTACGATCAAACAGACGAAACAATCACACATCACATTGTGGACAGACCCAGCATCGACAAACAGTATATCAACAGGTACTACGTCCAGCCCCAGTGGGTCTATGATTGCGTAAATGGGAAGATACTGTTACCCGTAGAGGAATATTTCCTGGGAGTTACACTGCCGCCACATCTGTCACCATTCGTGGAGGAAAGCGAGGGAGATTACGTCCCGCCTGAGAAACTCAAACTCCTGGCTCTGCAGAGAGGAGAGAAGCCACAAGCAGAAgatgatgaggaggaagaggaagaagaggaggaggatgataACGAAGAGGAAGATCAAAGTGAAGAAGATGAGAGTGAGGATGAAGCtaatttagctgaaatggaggaGAAGAGAACGCAGGGAAAGAGTCTGTCAGTAAAGGTGACCCCTGGTAAAGTCAAACCAGTGAACCGCATGAAAGCAGAACAAGAGGAGAAAGCAGAGGAGAAGAGACTGGCTAttatgatgatgaagaagaggGAGAAATACCTCTATGACAAGATCATGTTTGGCAAGAAGAGACacgtcagagagGCTAACAAGCTAGCGGCTAAGAGGAAAGCTCACGATGACGCCAACAAAGCtgacaagaagaagaaaaagaaaaagtgctgATTGTATGTAATAAAGTGCTTCTTGTGTATTTTCTCTCCGTTCGAGAGACTTTGAGAAGTTTCTTCTCGTTTCAACTCATTACATCATTTAATGATTCACTGAACCCCGTGTGTCAGTTAAGTTTGCCCAAACTGGTTTCACTGAAGCTTTTCTGCATTTCTTGTCTTTGCTCGTCAGTTTTGACTGTGCCACGTTTCTAATAAACAGAAGatcatgattattttaaa

Function

symbol description
pes Predicted to enable RNA binding activity. Acts upstream of or within exocrine pancreas development; oligodendrocyte differentiation; and regulation of cell cycle. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of PeBoW complex and preribosome, large subunit precursor. Is expressed in several structures, including alar plate midbrain region; digestive system; liver primordium; musculature system; and nervous system. Used to study Shwachman-Diamond syndrome. Orthologous to human PES1 (pescadillo ribosomal biogenesis factor 1).
pes1 Enables RNA binding activity. Involved in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and regulation of cell cycle. Acts upstream of or within cell population proliferation and rRNA processing. Located in chromosome; cytosol; and nuclear lumen. Part of PeBoW complex and preribosome, large subunit precursor.

NR:

description
pescadillo homolog

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0008283 cell population proliferation biological_process
GO:0048709 oligodendrocyte differentiation biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0070545 PeBoW complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0043021 ribonucleoprotein complex binding molecular_function

KEGG:

id description
K14843 PES1, NOP7; pescadillo

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240467.1 True 2114 mRNA 0.46 15 1603813 1612548

Neighbor

gene id symbol gene type direction distance location
pole pole,LOC107704563,LOC107668756 coding upstream 6085 1579923 ~ 1597728 (+)
si:dkey-98f17.5 si:dkey-98f17.5,LOC107755832,LOC107599615,LOC107668759,LOC107704964,LOC108431725,LOC108255717,LOC107599159,LOC106580116 coding upstream 61429 1530761 ~ 1542384 (+)
rfc5 rfc5,LOC107716544,LOC107668751,LOC107704514 coding upstream 101962 1494928 ~ 1501851 (+)
spring1 zgc:110063,LOC107667499,LOC107755806,LOC107599146,LOC107704950 coding upstream 292820 1307563 ~ 1310993 (+)
tesca tesc,tesca,LOC107726727,LOC107667246,LOC107750755,LOC107566489 coding upstream 332556 1266077 ~ 1271257 (+)
gal3st1a gal3st1,gal3st1a,LOC107741514,LOC107653284,LOC107755837,LOC107668734 coding downstream 3514 1616062 ~ 1622327 (+)
ppil2 ppil2 coding downstream 10549 1623097 ~ 1652416 (+)
LOC122344671 LOC107755842,LOC107599645,LOC107599132 coding downstream 130767 1743315 ~ 1745171 (+)
ydjc LOC107741491,LOC107704612,LOC107599608,LOC107755843,LOC107668745,LOC107599128 coding downstream 161417 1773965 ~ 1779426 (+)
ccl19a.1 LOC107704652,LOC107741512 coding downstream 181986 1794534 ~ 1796438 (+)
G32443 NA non-coding upstream 27543 1544752 ~ 1576270 (+)
G32439 NA non-coding upstream 90264 1513050 ~ 1513549 (+)
G32406 NA non-coding upstream 95706 1497804 ~ 1508107 (+)
G32381 NA non-coding upstream 178716 1422607 ~ 1425097 (+)
G32390 NA non-coding upstream 185327 1411723 ~ 1418486 (+)
G32499 NA non-coding downstream 40885 1653433 ~ 1653899 (+)
G32504 NA non-coding downstream 60481 1673029 ~ 1674356 (+)
LOC122345819 NA non-coding downstream 77561 1690109 ~ 1697674 (+)
G32513 mapk1,LOC107386038 non-coding downstream 93426 1705974 ~ 1706887 (+)
G32538 NA non-coding downstream 147446 1759994 ~ 1760230 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other upstream 488408 1112264 ~ 1115405 (+)
G32277 NA other upstream 546660 1055193 ~ 1057153 (+)
tal2 tal2,LOC107594599,LOC107725114,LOC107723303,LOC107667406 other upstream 1152448 450168 ~ 451365 (+)
LOC122346012 cunh9orf84,LOC107704297 other upstream 1156327 432779 ~ 447486 (+)
susd1 susd1,LOC107594557,LOC107704917,LOC107572260,LOC107667560 other upstream 1172348 419242 ~ 431465 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other downstream 179280 1791828 ~ 1793266 (+)
G32611 prrc2b,LOC107704672 other downstream 210106 1822654 ~ 1826114 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other downstream 222600 1835148 ~ 1843013 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other downstream 288079 1900627 ~ 1905499 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other downstream 397669 2010217 ~ 2019150 (+)

Expression


Co-expression Network