shisa2a (shisa2,LOC107746248,LOC107672960,LOC107597350,LOC107741289,LOC107557100)


Basic Information

Item Value
gene id shisa2a
gene name shisa2,LOC107746248,LOC107672960,LOC107597350,LOC107741289,LOC107557100
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11847127 ~ 11848955 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240473.1
AGGGGGTCCAGCAAACACATAAATGAAGCCCGCGTACAGTGACTCATGATCAGATGCAACTGGCTTACTGGGTCTTCGAAGCAACTTAAACCGCGTTCAAAGGATTTAAACTGACGCAACCATGACTCCGTCTGTATCTTGTGCGCTCTTTCTGTTTGTATCAGTCGTTCTCCCGGTGTCTTTTGCATTATCGGGAGAATATTGTCATGGTTGGACGGACTCCTTCAATTCTTGGCACCGGGGATTCCAGTGTCCGGAGCGCTTTGACGGCGAGGATGCGCGCTACTGCTGCGGTACTTGCGCGCTGAGATACTGCTGTACGTACGCGGAGGCGCGCCTCGATCAGAGCACCTGCGATACCGGCTCCGAGCCAGAGATCACGGGCGACGTGAAAAAGATGACAGAAAGTgTTCCAACCTATCTGCCCTTTGTGATTGTGGTGAGTGCGTTCCTGTCGTTCGTTCTGGTTGGTGCGGTTGTGTCTATCTGCTGCTGCCAGTGCGTGAAACCCAAAGCGAGTGATCGGCCAGCGGGGCCATCTGCTGCTCAGACCAGCCTGTTGGAGTCCGGAGGGCCCTCGGTGGACAGCTCTACACCGTCCCGCACCTCCACCTCAGGCTCCTCCATGACAAACGCTCGCCCTCCACCATCCGAGCTCAGCGTGAACCTCTACGGCCCGATGGGAAACGCGTTCCCACCCTCTCAGTCCCAGCAGTATGTTGCTCCACTCCCACAGGGGGCACCACAGTTCTACCAGCCCTACATGAATTATGCTCTTCCCCCCGAACGCAGTATGCTGATGGCCCCTGCGTTCTTGGACGCCCGTCCTGCGTTTGGGCAGCCTTTTCCTCAGGCCCCCATGCACACTGAGCCCATTTATCCCCCTGTCACTATCTGATAAAACTATGAATGGACTACAAAACTGTGTGGGACTATAGAAGAAGTAGGGATGTTTCACGGATGCTTTCTTTTCTTGCTACCTTGGGTGGCCTccacaaacatgttttatatacacaaatacaattATGACCGACGTAATGTTGGTCATTGTTGGTatctttttattatgtattaatactTCTCATAGGAGTGTGTTTGCATGAATACGTGATTGTTTGCTCAGCAATCAACGattgtattgttatttataacagATCAGAgaataaattta

Function

symbol description
shisa2 Predicted to be involved in negative regulation of Wnt signaling pathway and negative regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

NR:

description
protein shisa-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240473.1 True 1171 mRNA 0.51 2 11847127 11848955

Neighbor

gene id symbol gene type direction distance location
zc3h12b LOC107741193,LOC107746237,LOC107672716,LOC107597257,LOC107663225 coding downstream 7085 11825267 ~ 11840042 (-)
fdx1b LOC107672951,LOC107746235,LOC107597349,LOC107741288,LOC107663211 coding downstream 60984 11777612 ~ 11786143 (-)
arhgap20b LOC107672940,LOC107597255,LOC107663218,LOC107746244,LOC107573640 coding downstream 79113 11731519 ~ 11768014 (-)
LOC122345938 NA coding downstream 139411 11704231 ~ 11707716 (-)
LOC122345659 NA coding downstream 157205 11682220 ~ 11689922 (-)
gab3 LOC107746243,LOC107597263,LOC107672781,LOC107663235,LOC107741201 coding upstream 53367 11902322 ~ 11923009 (-)
LOC122345274 NA coding upstream 320639 12169594 ~ 12173002 (-)
LOC122344646 NA coding upstream 324082 12173037 ~ 12177215 (-)
LOC122345275 LOC107597264,LOC107672815,LOC107742671 coding upstream 341747 12190702 ~ 12196377 (-)
LOC122344659 NA coding upstream 423262 12272217 ~ 12273638 (-)
G35660 NA non-coding downstream 71014 11775805 ~ 11776113 (-)
LOC122344709 NA non-coding downstream 72515 11769860 ~ 11774612 (-)
G35601 NA non-coding downstream 143419 11701233 ~ 11703708 (-)
G35599 NA non-coding downstream 147461 11697948 ~ 11699666 (-)
G35597 NA non-coding downstream 149453 11696191 ~ 11697674 (-)
G35690 LOC107597260,LOC107746241,LOC107672756,LOC107741198,LOC107663227,LOC107557115 non-coding upstream 17807 11866762 ~ 11871053 (-)
LOC122345280 NA non-coding upstream 330096 12179051 ~ 12179750 (-)
G35797 NA non-coding upstream 332532 12181487 ~ 12182979 (-)
G35805 NA non-coding upstream 377963 12226918 ~ 12248708 (-)
G35804 NA non-coding upstream 379627 12228582 ~ 12247509 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 31183 11795656 ~ 11815944 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other downstream 194500 11583780 ~ 11652627 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other downstream 380005 11419955 ~ 11467122 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 878009 10960311 ~ 10969118 (-)
G35384 NA other downstream 920964 10923927 ~ 10926163 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other upstream 316448 12165403 ~ 12169410 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 468848 12317803 ~ 12319685 (-)
G35936 NA other upstream 652959 12501914 ~ 12505958 (-)
G36047 NA other upstream 1204889 13053844 ~ 13054857 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 1730106 13579061 ~ 13582290 (-)

Expression


Co-expression Network