CI01000004_17368205_17412619



Basic Information


Item Value
gene id CI01000004_17368205_17412619
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 17367647 ~ 17412936 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_17368205_17412619.mRNA
CTATAAAATAGAATGTTTTGTCTGAAAACACGAGTAGCTCATATCATAGGCTTCTCATGATGAGCAAAAGTTGAGCACACAGTCGAGACTGCAATCAATGCCATCCAATGAATGTGTTGACGGGGGATGTTCATCGAAGTTCCGCCCCTCGTCGGCTGTTTGCTCGGTCCATATCATCAGTGGAGAGCGCGAGCGCACGCGAATTAAAATATTTGTGTCAGAAAGAGAGATTCCTCAGCTCGTGAGTGGATCATGACGCACGTCCGCGCGTAATGTCACGCGCAGCGGGTCTGTGTGTGCTGGGACAGGTGTGTTACCTGTGGCTGTGAATGGTGGAAATGGGCACGGAACACCAAATGAACTACTGTCCTTGAACATTGTTGTTTTCCGACTAGGAACTAGTGAGAGCGAGACTTTTGTCTATTGATTGATCGCGTGACGCTTTTTAAACGGGTGAAGACACGCGCACCACTCCCTGAGCACTGGATGTAAAGCTCTCTTTTTGATTGCTGGTTCAGTGTGAACGGAGTTTGCCGCATTACCGAACCGGGCTGCAGTATGTGCGAGACGGTGATGGCCGTGTCTCAGCTGGACATCGAGCCTCATCCACCGGAGAACGGCTTCGTCACCCCCGAAACCAATACATCGCCCGAATTACTTACGCGGATCGACGGCGGCGTTTTGCCTAACGTGGGCGGATTTGGGAAGTATCAGAAACAGCTGATCGTTTTAACATGGATCCCGGCCATTTTCATTGGCTTCAGCCAGTTCTCGGACAGTTTTCTCCTGGCTCAGCCGAACAGCCCGTGTGCTCCGAACAGCAGCGAGCTCTCGACGACTCTTAAGCCCCAGCCGTTTACCGGCGTCAACAATGAAGGCAAAGCCACTGAGGCGTCATCACTCTGCATCTGTGTGCAGTCAGGATATGAACTGAAAAATGGACTAGAGCAGAATGTTGTCACCAAGCTAATCTGCCTGTGCTTGAAGCAGAGACATCCTTTGAAAGTCATGGCCCTTTCAGATTTTGAGGACTATTCTAATTGCATTGGAGGCCCCGCAGGCTTTGACTTTAATAAGATAAGTAATAAATGCCGTCGGAGCGAGGGCTGCCTGTTTATATGTGGTGTCTCTCACACCGGTCTGTTGCCAGGCAGAAACTATGCGGCAATCTCTTGTCATTTCCTCACTGGCGCTCATTCTGTTCTGCGCACCTTCCCTTTCCCCGATTCACTTATCAGTGAGGAAAGGTGGATGATCAAGTACACAAACTGGAACCTAGTGTGTGACTCTGCCTGGATAGTTCATATTGCCAAATTCTCCCTGTTGGTGGGCTCCATCTTTGGATACTTGGTGTTGGGAGTTCTGGCAGATTGGTTTGGAAGGCACCCGGTCCTGATCCTGTCCGTCTTCTTCATGTTAGTCTTCGGCATGACAGTGGCCTTCTCTGTCAACGTCCCAATGTTCAGCACCCTGCGCTTCTTTGAAGGGTTTTGCTTGGCAGGAATCACACTGTCCCTCTATGCCCTGAGGATCGAGCTGTGTCTGCCGGGATGGCGTTTCTCCATGACCATGGTGGCAAACTTCATGATGTTGGCCGGGCAGCTGCTCATGCCAGGACTGGCGGCCCTCTGTCGGGACTGGCAGATTCTGCAAGCCGTCATAATCTGCCCTCTCATACTCATGCTGTCCTACATCTGGATTTTTCCAGAATCTCTGCGCTGGCTGCTTGCAACTCAGCAGTACAGTCGCTCCAAATGGATCATGGATCGCGTCGCCAAGAAGAACGGCATCAATCTAGAGGAGGATGCTGAGGAACTCATGGCAGAAATGAACAGAGCCCTGCCAAAACCATCCAAGAAGACGTGCATTGTGAAAATGGTTGGCACAAGGAACCTGTGGAAGAATATAGTCGTGCTCTGCGTCAACTCACTGACAGGTTATGGCATACACCACTGCTTTGCGCGCAGCATGATGGACCAGGATGTGGAGATGACCACCATGTTCCATAACTTCTATGCCGACTACTACACCATGGCGGGCATCGCCGTGGCTTCATGCGTGGCACTTTGCCCTGCGGTGGGCGTGATGGGCCGGCGTGGAGGACTCCTCATGTTCATGATCATTACAGCCCTGGCGTCTCTCCTTCAGCTGGGCCTGCTAAACTATACGCTGAAGTACAACTTTTCTGTGGCTTTCTCCATCATTGGCATGTTCTCCTCCCACGCTGTCAGCAACCTAAGCATCTTTTTTTGTGCTGAAATCACCCCTACTGTGATTAGGGGTGGTGGGCTAGGCCTCGTACTAGCCAGTGCTGGTTTTGGCATGCTGACAGCACCCATCATGGAGCTGCATAACCAGAAAGGCTATTTTCTGCATCATATCATCTTCGCCTGCTGTACTCTTATCTGCATCATTTGCATCCTGCTGCTGCCAGAGACTCGCGATCAACCACTATCAGAAACATTAGCAGATGCAGAAAATTACACTCGCCAACCATTGCTGCCACCTCGCAAGCCAGGTGAGCAACGCCTTCTGCTGACCAAATCTGACAGCCGTGAGTACGCACGAGTAGGCGACACGCCCCTCCACGAAGCAGCCGCCACCGCTATTTCCACTATGGACTCTACTGCCTCATCCGCCATTGATCTTCAAATGCTCATTGACCAGCAAGCAACAGGTCAGGTAGAGCTATTCCATATGAAGACCTTGACTTCTTCCCAAGATCAAGATGAACTCAAGCAAACCATTGAGGAGTATCCCAAAGCTGCAACCACCCCGGTGTCCTCTGCCGAGGATCCTCTCCTCGCCTCTATCCCAAAAACCTCTACACCAATCGCTATTAGTTCTATTCAGACATCTAAAACAGAATCTCCTCCTGATGTTGTCCTAACTTTTCTGTCTTCTTCCTCCGCGGACACTCCTTTGTCCAGCAATCATGTCTTGGATTCCTCTACTTCTCCTTTATCGACAAAGATCCAAACTCCTTTGGAGTCTCCCATACCAGGTGCTGATGATTGCAACATCCAAGTTGAAGTGGGCTCTGCTTTTGCGTCTTCTTCGCCACCACTTGTCAGTGACTCTAGCGTCCACCCGACAGTGTCCCCCGTAGACGGCGCCATTCCTCTCTGCACAATAAACCTGTCCGATCTACCACCTACATCCACTGGACAATCACCCAATCAGTCTTTAAATGACATTCCTCCCTCTTCCTCAATAGACTCTCCCGTTAATCTAGTCACTGATATTCTAGCCCCTCTCCCAACACAGTTGTCATTACCACCAATACTAGACCCAAATGGTCAAGGTAATGGCATCCCAGCCCAATCCTTCTCTTCACCCATAGATTCCGGCACTCCATTGTTACACTTAGTTGCTTCACCTATGATGAACTCCATAGAATCTGGCCCATCTTCACCAGCTCTACTGGAGTCTTTAGGTAATGGTACTACTCTTCATGCCGCTGTAGGTTCAACCGCACCTCATGCCACAAGCACTGACTCTGTTACAGAATCTGGCCACCCCCTCATGGCGGACTTGACCGTTTCCTCGCCTATTGACTCAGGTGTACCTAGAGACGCTGACTTGCACATCACGGAAACCAACACTGCCAGTGGGGAGACGTCTTCATGACGGACACATTCGCTCCACATGACTTGATGGGCAGCCTTATTATTCTTACTGCTTGTTATCAAGAAGCAGTTCTTGCCGTGAGAGGGGCTCGTTTCAGTCATTGTTAGAAGTATTGTTATTTTCCAGCAGCCATGACTCGAGAATGGCAAAGCAAGGAGAAGGTATAAAAGGATTTGACTGAAAGGGAACGACCAACAGTCAAAGCTCAAAGGGTTTTTACTCTCCCTTGGTTTCCAAGCCTTCTTACTGTGGTGCCAGTATCTGCTTTTTGGGCAGCTAGATCCAAAATTCCATGCGTTATCATTGAGCTTCTATTA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_17368205_17412619.mRNA True 3947 mRNA 0.50 12 17367647 17412936

Neighbor


gene id symbol gene type direction distance location
CI01000004_17320843_17323478 NA coding upstream 43870 17320492 ~ 17323777 (+)
CI01000004_17214619_17236647 PTH1R, PTH1RA coding upstream 130973 17214619 ~ 17236674 (+)
CI01000004_17062704_17110319 CRHR2.S, CRHR2 coding upstream 257328 17062704 ~ 17110319 (+)
CI01000004_16869205_16944944 CLSTN2 coding upstream 422703 16869205 ~ 16944944 (+)
CI01000004_16812706_16814956 NA coding upstream 552579 16812706 ~ 16815068 (+)
CI01000004_17419825_17424299 MGC53997, TBB2A, TUBB2B.L, TUBB2, TUBB2A, TUBB2B coding downstream 6889 17419825 ~ 17424743 (+)
G35185 NA non-coding upstream 29344 17328251 ~ 17338303 (+)
G35191 NA non-coding upstream 51783 17314869 ~ 17315864 (+)
G35183 NA non-coding upstream 53366 17313019 ~ 17314281 (+)
G35272 NA non-coding upstream 55820 17311487 ~ 17311827 (+)
G35271 NA non-coding upstream 61401 17306031 ~ 17306246 (+)
G34400 NA other upstream 342178 16971995 ~ 17025976 (+)
G33815 NA other upstream 1301183 16063415 ~ 16066464 (+)
G34220 NA other upstream 1427697 15939357 ~ 15939950 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 2275678 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 3330747 14035393 ~ 14039142 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016078 slc22a23 coding NC_007113.7 CM002886.2 2024610 ~ 2096055 (-)