tm2d2 (tm2d2,LOC107709865,LOC107673424,LOC107750179,LOC107672780)


Basic Information

Item Value
gene id tm2d2
gene name tm2d2,LOC107709865,LOC107673424,LOC107750179,LOC107672780
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9750652 ~ 9752957 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240507.1
TCATCATAATGCGCCGCTTGTCCGTTGTGCATCCCAGTTTTAGCTTGTGTTTACGGGTAACGTTAGCAGAATAATATGGTACATAGTCGTCCACGATACGGAACATAAGTCgcatattatgaaataaaactcGCCAGTAATATGTCTGCTGGCATTTACATATGCAACTGGCAAAATCTCCGCTAGGTATTGCCTCTCGCGTTGATTAGCCGGAAAGATTATTTAGCCGCTGATAACTTAACCGCTGTTCAGAAGCCATGCCGCAGATTTCAGtcaactatattttattatgcgGACAGTTCTTGCTGCTCTTCACAGTGCTGCTTTTACAGTGTCTAGAAGGCATTCACTCGCAAAACTCGACCGAGTCACCCGGAAACAGAGTAACCACCAGCAAAACAGTTCTGACCAGCGAGCAGCCAGAAGAAAACGTGACGGAGAGCGTTATACCTACAGAAATATCAAATCACACGGAGCTGTATGAGTACAGCCCTCCATCACCTGTCGTCCTCTGTCGATACCTACCAGAGGAATTCATATTCTGTCAAGATCCAGTCGACCACGGAGGAAATGTTTCTGCCTTTCAGGAACTGGGTTATGGATGTGTAAAGtttggCGGTCAAGTGTACAAAGATGTAAACCATACCCAGGTGTTATGCACGGCACTGGATGGCATAGAGTGCGCTGGACCAAGGGAGTTTCTCAGAGGCAATGAGCCATGCATTAAATACACAGGACACTACTTCATCACCACCCTGCTGTACTCATTTTTCCTGGGGTGTTTTGGCGTCGATCGGTTCTGTCTCGGGCACACTGGGACCGCGGTGGGAAAGCTTCTTACCCTGGGAGGTCTTGGCATCTGGTGGTTTGTGGACCTCATTCTCCTGATAACAGGAGGCCTGACTCCCAGCGACAGCAGCAACTGGTGCACTTTCTACTGATTTCAAAAGGCTGATTCACCTTTCTCACGCTCACAAGCGTATAATTAAAACACTGTATGCATATGGGCTTACATTGGCCTTATCTcccatttattatttgtaaaatactgTTCTCGTTTCTTTTGTAAAGTGTTTCCATGAAGcaatgttgtaaataaatggCATCTTCAAAGAGTAAAAGTCTTCATAGATACGTCAGTA

Function

symbol description
tm2d2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TM2D2 (TM2 domain containing 2).

NR:

description
LOW QUALITY PROTEIN: TM2 domain-containing protein 2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240507.1 True 1142 mRNA 0.45 4 9750652 9752957

Neighbor

gene id symbol gene type direction distance location
unc5db unc5db,unc5d,LOC107673416,LOC107709861,LOC107659286 coding downstream 68851 9579488 ~ 9681801 (-)
hdr LOC107659287,LOC107721544,LOC107673363,LOC107709863,LOC107594999 coding downstream 174845 9571202 ~ 9575807 (-)
LOC122345250 cyb561a3a,LOC107673362,LOC107721551,LOC107595000,LOC107659288 coding downstream 181358 9566515 ~ 9569294 (-)
zgc:153409 LOC105896809,LOC106958509,LOC103460788,LOC103154043,LOC107671222 coding downstream 184720 9565479 ~ 9565932 (-)
LOC122345251 histh1l coding downstream 187356 9561925 ~ 9563296 (-)
tbx3b LOC107709835,LOC107592413,LOC107673376 coding upstream 1077 9754034 ~ 9757833 (-)
araf araf,LOC107709867,LOC107595004,LOC107673380,LOC107750175,LOC107672764 coding upstream 27881 9780838 ~ 9791734 (-)
imp4 imp4,LOC107595005,LOC107709870,LOC107750176,LOC107592341,LOC107672800 coding upstream 39230 9792187 ~ 9796033 (-)
rabl6b rabl6b,rabl6,LOC107750171,LOC107672784,LOC107673384,LOC107709868 coding upstream 45337 9798294 ~ 9808373 (-)
tcn2 tcn2,LOC107595007,LOC107709872,LOC107673413,LOC107672782,LOC107750173,LOC107592334 coding upstream 55912 9808869 ~ 9813130 (-)
G34704 NA non-coding downstream 502611 9246920 ~ 9248041 (-)
G34594 NA non-coding downstream 689838 9013306 ~ 9060814 (-)
G34607 NA non-coding downstream 759339 8991101 ~ 8991313 (-)
G34606 NA non-coding downstream 759629 8988611 ~ 8991023 (-)
G34583 NA non-coding downstream 816513 8933911 ~ 8934139 (-)
G34869 NA non-coding upstream 11116 9764073 ~ 9764532 (-)
G34871 NA non-coding upstream 13311 9766268 ~ 9766607 (-)
G34877 NA non-coding upstream 24676 9777633 ~ 9778238 (-)
G35035 NA non-coding upstream 528452 10281409 ~ 10296141 (-)
G35047 NA non-coding upstream 584790 10337747 ~ 10341167 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other downstream 348029 9337828 ~ 9402623 (-)
vamp5 LOC107594989,LOC107681225 other downstream 530124 9215498 ~ 9220528 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 820599 8929470 ~ 8930053 (-)
LOC122345093 NA other downstream 1072934 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 1319066 8429700 ~ 8431586 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 572002 10324959 ~ 10335343 (-)
G35122 NA other upstream 708251 10461208 ~ 10461709 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 1115407 10868364 ~ 10874064 (-)
G35384 NA other upstream 1170970 10923927 ~ 10926163 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other upstream 1207354 10960311 ~ 10969118 (-)

Expression


Co-expression Network