ap3m2 (ap3m2,LOC107755857,LOC107551816)


Basic Information

Item Value
gene id ap3m2
gene name ap3m2,LOC107755857,LOC107551816
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2866165 ~ 2874893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240521.1
CGTATCCTGCCATTGGTTGGAGCGGGTGACAATCACACGTTTTCTCGTCACAAAATAACGGAGAAGGAAGCGACGTTTCTGGTTCTTGtctcattaaagaatcctggaaTTATTAAAGTGTCgggtgggaaaaaaaacgaaacagaTCCTGCCGAGATGATCCACAGCCTGTTCCTGGTGAACGCGTCGGGGGACATCTTCCTGGAGAAGCACTGGAAGAGCGTGGTCAGCAGGTCCGTCTGCGATTACTTCTTCGAGGCTCTGGAGCGAGCCACGGAGCCGGAGAACGTGCCCCCGGTGATCCCGACCCCGCACCACTACCTCATTAACGTGCTCCGCCACCGCATCTACTTCGTGGCCGTGATCCAGAGCGAAGTGCCTCCTCTGTTCGTCATCGAGTTCCTGCATCGCGTCGTGGACACCTTTCagGATTATTTCGGGGTTTGCACAGAAGCGGCGATTAAAGACAATGTGGTGGTGGTCTATGAGCTTCTGGAGGAGATGCTGGATAACGGCTTCCCGCTGGCCACCGAATCAAACATCCTGAAAGAGCTCATTAAACCTCCCACCATCCTGCGCACTGTGGTCAACACCATCACGGGGAGCACTAACGTAGGCGAGCAGCTTCCTACAGGTCAGCTGTCGGTGGTCCCGTGGCGGCGCACCGGGGTCAAGTACACCAACAACGAAGCTTATTTCGACGTGGTGGAAGAAATCGACGCCATCATCGACAAATCTGGTTCCACGATCACAGCAGAGATTCAGGGAGTGATAGACGCCTGCGTGAAGCTCACGGGGATGCCCGATCTCACCCTGTCCTTTATGAACCCTCGGCTCCTGGACGACGTCAGCTTCCACCCCTGCGTCCGGTTCAAGCGCTGGGAGGCCGAGCGGATCCTGTCCTTCATCCCGCCGGACGGAAACTTCCGCCTCCTCTCCTACCACGTCAGCTCTCAGAACCTGGTGGCCATCCCGGTGTACGTGAAGCACAACATCAGCTTCAGAGAGGGCAGTTCTCAGGGCCGCTTTGAGCTCACCCTGGGCCCCAAGCAGACCATGGGCAAAGCGGTGGAGTCCGTCCTGGTGAGCAGTCAGCTGCCCCGGGGCGTCCTCAACGCCAACCTCAACCCCTCGCAGGGAACCTACACCTTCGACCCCGTCACCAAGCTTTTGTCTTGGGACGTGGGCAAGATCAACCCCCAGAAGCTGCCCAGTTTGAAAGGATCTATGAGTCTCCAGGCAGGAGCGTCCAAACCTGACGAAAACCCAACCATCAACATCCAGTTCAAGATCCAGCAGCTGGCCATCTCAGgtCTGAAAGTAAACAGGTTGGACATGTACGGCGAGAAGTACAAACCTTTCAAAGGCATCAAGTACATGACCAAGGCCGGCAAATTCCAAGTCCGGACCTAGAGGGACTCAGTCCTGGTTTGCCCGATCTCCTTTGGGAAGCGTTTCAGGATCATTTCAGGAAAACACCGTACGATAAGACTGTCAGTCGGTAACGGGAGCGATTGTTCTGTTATTAACACTATCAAGTTCACCCGAGTTAAAGGGCCGGTAACTTCATATTCCTGTTTTATTGCGTCCAGTTTTTCACAGCTCTCTCCTTCACGGTACTGTCATGTATTGCTCTGTTTTCTCAAGGTGTCTCATTTCTGCAGAACAATAATCCCTCACGACCATCACAGCCTCCGTCCCCGACGACTGTGTCCGACGCAAACCATttaataatatcttttttttttaaaaatggtcaaACACTGGACTTTCATCTTTTTGTTTACTGTAGCGTGTGTACCTTTCGTTTTCGCTGTTATCGAACTACGCTATTTATTGCCTGTCAAATACTTTAAAGCATAACCGACCGTAAGAGTCCACGGTAACCCTATAAGCGATGCTCGATTGTTCGGTTTTACCCAGAATGCAACGTGCGTTTATGAAACCCGTCCGACCGTCTGAAGCGCAGCTGTAGAAGTTATGATTATGGATGCTGAATGAAAGTAGGAAAtgtgtgcattttgtttttagcttcTGTTGATGTTTCCTTTCCTGTTTGTTTACAGTGCTatgaaatgatgatgatgatgattaaaaacacacacaaaacgtC

Function

symbol description
ap3m2 Predicted to be involved in endocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in Golgi apparatus and cytoplasmic vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in cytoplasmic vesicle. Orthologous to human AP3M2 (adaptor related protein complex 3 subunit mu 2).

NR:

description
PREDICTED: AP-3 complex subunit mu-2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12398 AP3M; AP-3 complex subunit mu

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240521.1 True 2113 mRNA 0.51 9 2866165 2874893

Neighbor

gene id symbol gene type direction distance location
tet3 LOC107654213,LOC107708251,LOC107557386,LOC107697244,LOC107551814,LOC107755856 coding downstream 122 2824171 ~ 2866043 (-)
LOC122345702 figla coding downstream 256580 2607214 ~ 2609585 (-)
mxd1 mxd1,LOC107670395,LOC107708253 coding downstream 286362 2555476 ~ 2579803 (-)
zgc:65851 zgc:65851,LOC107670379,LOC107708255,LOC107668750,LOC107599600,LOC107755851,LOC107573085 coding downstream 322591 2536025 ~ 2543574 (-)
purba LOC107737074,LOC107755849,LOC107668742,LOC107670383,LOC107599601,LOC108431741,LOC107580671 coding downstream 338828 2524559 ~ 2527337 (-)
kat6a kat6a,LOC107708249,LOC107697242,LOC107755858,LOC107699914,LOC107551817 coding upstream 1416 2876309 ~ 2910382 (-)
LOC122345463 sema4c,LOC107699920,LOC107697240 coding upstream 147956 3022849 ~ 3089522 (-)
gnb1l gnb1l,LOC107708243,LOC107755863,LOC107551810 coding upstream 468666 3343559 ~ 3376526 (-)
txnrd2.2 txnrd2 coding upstream 516101 3390994 ~ 3417741 (-)
taok3a taok3,taok3a,LOC107699916,LOC107697236,LOC107708246 coding upstream 547991 3422884 ~ 3494193 (-)
G32881 NA non-coding downstream 68566 2749959 ~ 2797599 (-)
G32883 NA non-coding downstream 91975 2767779 ~ 2774190 (-)
G32884 NA non-coding downstream 95794 2769201 ~ 2770371 (-)
G32882 NA non-coding downstream 99394 2765283 ~ 2766771 (-)
G32870 NA non-coding downstream 137358 2652444 ~ 2728807 (-)
G32906 NA non-coding upstream 61588 2936481 ~ 2936938 (-)
LOC122346059 NA non-coding upstream 73591 2948484 ~ 2950332 (-)
G32910 NA non-coding upstream 107874 2982767 ~ 2984983 (-)
G32914 NA non-coding upstream 206014 3080907 ~ 3120371 (-)
G32922 NA non-coding upstream 300826 3175719 ~ 3176249 (-)
add2 add2,LOC107668755 other downstream 260248 2586587 ~ 2605917 (-)
snrnp27 snrnp27 other downstream 280713 2580548 ~ 2585452 (-)
G32857 NA other downstream 312019 2496504 ~ 2554146 (-)
LOC122344636 pex11a,LOC107556261,LOC107714788,LOC107690406,LOC107691149,LOC107715221,LOC107551461 other downstream 843243 2020096 ~ 2022922 (-)
G32676 NA other downstream 898417 1966637 ~ 1967748 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other upstream 60850 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other upstream 76569 2951462 ~ 2960177 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other upstream 869782 3744675 ~ 3752764 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other upstream 1003757 3878650 ~ 3898578 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other upstream 1269963 4144856 ~ 4193081 (-)

Expression


Co-expression Network