si:ch1073-224n8.1 (si:ch1073-224n8.1,LOC107700253,LOC107665903,LOC107710566,LOC107596128,LOC107746433,LOC107548460,LOC107665901)


Basic Information

Item Value
gene id si:ch1073-224n8.1
gene name si:ch1073-224n8.1,LOC107700253,LOC107665903,LOC107710566,LOC107596128,LOC107746433,LOC107548460,LOC107665901
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13799827 ~ 13804456 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240524.1
GACCACATCTTTGACCAATCAAAAGTCAGGATTGACCCCAGCGTTTGTACTGTGGAAAGAAGGCTCTGGCGCTTAGCGAAAAAGCGATTGCTACGTTAATGCAGGTTAACAACGGCATCGTCGTGAGCATTCAGGGCGGTTATTTATCGAGCTTTCATCAAAACCTAGTCTGCGAAAAGCTCCATTTGCTAGAGGAAAGTGTGGGCTAGTTTGCTAATGGTAATGCTACAGTAGCTCATCGGGCTCGTCTCTAGTTTTTCATTTCAGAGTGAATAGGAAACACTGCCGCAGCGAGACTCCAGAAAATGACCGTTTCCTTTTCTGTAGCATTAATATATCGCAATAACTAATAATATAGGTTCCCTCTTCGTTTGTATGCACGGCAGAAGAATTCGCCATGAACTCAAAGCGCAACAACGGTGAAAACGGGGCGGGCAGAATCAACCCAGGCTCGGTACCAACAGGAACAAACAGCTCATCAGCGAGTGCTTCTCACCGCAAACAAACTATAATCAACTCTTCTCATAAGGGAGAGAAAGATGAGTGCATGCAAAACACAGTCCGAGACAAAAACCTGTCCATCTCCACGCTCAGAACGCGCCTCGGACCGACCATCCGGTCCACCCTGTCCGCGGCGGTGGACACTCTTCTGGGCGAGATCGTGGCGGTGCTGTCCGAAACCCAGCGGGAGCTGCTGACCAAAGAGCAAGAGAACGAGAAGCTGAAAGTTCGACTCGAAGTCTCTGAGAGAGAGCTCAAGACGTTACAGGAATGTCTGTGTAGCGCGCAGAAATTAATCGACCAGCTTCAGGGTCCCTTTGGAAGCCCGCCCATGCCGGGTCCCCACGTCTACGCCTCGGCTGGACCCGTAAACTCGAGCCGCTTGACCCATAGGAGCGCGCCCGAGCAAGATCCGCGCTGCTTTACTGGAGCTGAACCCGAGTTGAGTGGCGCTCTGGGTGATGCCATACACGGCTTTGACTCCAGGGAGGAATTCAAGAGCTGCCACCTCTCCATTCAGGCGGATGGGACGGTGACGAACAGTTTTTATGACCCTATAAACGTCCATTCCTCTAACATCTGTTCAGATATGAACCGACCTGGTGAGATGGTGGATGACAGCAGAAGGCTCACACACGCCAGACCCCAAAACCCTCCCTCACACACTAGCTTCTCTATTAAAGAGGAGCAGGTTCCTACCTCTggacaggtgtgtgtgcgtggaagAGAGGCGGCCACGGAGGCTGAGCACTCtgcacagagtgtgtgtgatctgGCATACGTCCACGTGGTCGAGGAAGAAGGAGGCCCCCGTTCACACCATCACCAATCCAAGCCTACACCACCGACCCCCTCCAGGCCTCACAATGGACCTTCTTCCAGTAGTTCACCATCCCAAGGAACCTCCGGACTTAGGTCTGCCCAGAGGGATGCTCCTGGTTTAGGTATGAACACAAGCAGGAGCCCAGGGGTGGGTGGCTCATCGCCAGAAGAGCCCATACGGCGCTCCATCTCTGAGCTGATGGGAGAGGCACCAGGAGAACGTCCTCACTTGTGTCTGGAGTGTGGCAAGACCTTCCGTCTTATCTCAAGCTTGAAAAAGCACctgaggatccacaccggagagaaaccgtatcCTTGCACTGTCTGTGGCCGCCGATTCCGTGAGTCCGGGGCTCTTAAGACTCACCTCCGCATCCACACGGGCGAGAAACCATATTCCTGCTCTGATTGCGGGACGCAGTTTCGTCATCTCGATGGCCTGCGGAAGCACCGCCGCACGCACACCGGTGAAAAGCCATATGTGTGCAGCGTCTGCGGGAAAAGGCTCAGCCGCCTGCAGCATCTGAAACACCACCAACGCATACACACGGGAGAGCGGCCGTGTTGCTGCCCACTTTGCCACAGAGGCTTTAAGGATCCAGCTAGTCTGAGGAAGCACCTCCGTGCACATCAGGGTGAGCCGGGAGCGGATGAAGCAATGGGAATGGCTGGTTTGGGAGAAGGAGATGGGGGATCCATAGATGATGAGGATATGAGGTTCGGGATGTGGGGGGAAGAGGAAGGGAATGAAGGCGAGCCTGTGGTGGACTGTGTTTAGTTACAgggttatatataaaaaaaaaaaaatttactcggggatagttcacctaaaaaacacaaactctgtaatcatttactcaaaattTACCAAACCTGTacatgtttctttattttgttcaatACAAAAGATAACATTCTGAAGAATGTGGAGGAAACAAACAGTTTCTGAAAGTCAGAATTCCAGACACAGAATTCAACATTGCGttttgttcagcagaagaaagaaactgatTACATAAAGATTAcaagaattttcttttttgggtgatctTTCCCAACATTATTTTaagggactttttttttcttctttatttgtttttatgaaatgtggCGATGACTATACAGCAGAGGTTACATCTTGTCCTgggcttaaaaaaacaatgtctgcGGCAACATTTTCTTGTAGAGACTAAATTTAAAAACCTATAACAAGCACGTTATTTAACTATATGGTTATGTAAATTTTATCATGATGACTCAAATATCCACTTACTTCAAGTGCATATTATATCTcatgacatttcagatgtcaCATCATATAGACCAGGACATGTAGACTTGCATCCTTTTTTCTGTGTACTGTATTTTAGTGTACGAGCTGTTGAAGCTCCAGTGGGACTAACAGGGTATCATGTCTGTTACTCACATGTTATGGGTGTTGTCGTTGGTGtggtaatcattttaatgtgccCTATTTTAGAGAAAGAGCTACGACGAACACATTAAAGCCTTAACTGTGGTTTTATTGCACAGGCATAGCTGtagtattgttttaaattgggTTCTTCACCTTTTTATCAGTGAGTTAATATTCATTCAGCTTACTCTGGGTGATGGTTGAGTGCATCGTTAGTCAAGTGTTTGGAGGATATTTAGTTTAAGGTGAAGGGTATCTCGCATGCTGATCCAAAGAATCAGAATTGTGACTGCCAGGGTTAACTCTGCTGACTgatctgtaaaaatgtatattcatacatataacCTGGCTATGTATTAACATGCTGATTGGTTTGAATAAAAGAAGGCGTCTCCTTTAGGTTGAGGTGCAATGAGCCAGCACAGAAATCAAGTAAACTTTAAAAGTGCTGCCCTCTACTGAATATATGAGGGAAATGCGGTTACTGTAAAGTTGCTTTTATGGTTGGTTCTCCAAAGATGGAGACACCGTTTCTGTTGTAGCCATGGTGTCAAACTGTGTGGTTTTGTGAATacatcttttgttttctctttctcttttttttttttatatatctcatgaaatgccattttgtacatttgacttgtatattatgtacattGGTTTGAAATAGATTAGTCTTAAAACGTTCAAGACCGAAACTGGAGCTTCAAAGATCCATGACACGTGTTTTAATAACTCTGAACTATTTAAACTCTCTTTACTTTGTTACAATATTCTGTATGTTTCTGTGCCCACATGTGATGTTGAGATGTTGTTGCAGAAGTTTGAAGGTTGTAGTCCATCTGTAGTTGATTCAACAATaagttcaacaaaaaaatggcTGTAGTTGACACTCGAAATAGATCTTCGGTGTAAAAAGACCTCATCCTTTGGAAATATGCAGAATGGAATATTTGATACCATTTAAAGATCCAAACATTTTTTGCTAGTGTTAAAGCAGTTTTTTGGGCTGGTCTGCAACCTTATAAGTGTAATGCTGGGAACAGCGACACTTAAGCCAAATAGAGGGTAAGAGTCCAAATAGTTGTTTGTAATGTTTAGTTTCAATATATGGTAATATATAGGTATGATCCATGTAgtatttcattttccaaaactATACTTCATTGTAAGATATCAATACAGGTCAGTTTTCATAAGAAAACATTGAAATCTGctgagatctttttttttttttgctataacaTCTCTACTTGCATATcctttaatatgtattttctgTCATTATACTCTTTAAGAAGGGCAGAGTCATCATATCCTTAATATCTATAACAGTCAAGTTCACTCATATTCAGAATGATGTATCGACAGTATTAtaatcatttcaaattaaaatttttcaaaTCGA

Function

symbol description
si:ch1073-224n8.1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240524.1 True 4151 mRNA 0.44 2 13799827 13804456

Neighbor

gene id symbol gene type direction distance location
LOC122344637 NA coding upstream 3490 13792143 ~ 13796337 (+)
klhl13 klhl13,LOC107548461,LOC107693456,LOC107596129,LOC107710573,LOC107700252 coding upstream 23274 13733522 ~ 13776553 (+)
zgc:163098 zgc:163098,LOC107746377,LOC107700249,LOC107693453,LOC107710575,LOC108260249,LOC108411532 coding upstream 81276 13705427 ~ 13718551 (+)
si:dkey-17o15.2 LOC107746431,LOC107710568,LOC107596211,LOC107693437,LOC107700230,LOC107548464 coding upstream 95303 13700264 ~ 13704524 (+)
tagln2 -,LOC107710578,LOC107700246,LOC107746372,LOC107548469,LOC107596134,LOC107693452 coding upstream 160974 13633826 ~ 13638853 (+)
ltbp3 ltbp3,LOC107665902,LOC107710572,LOC107746379,LOC107700254 coding downstream 5257 13809713 ~ 13843783 (+)
LOC122346121 LOC107746380,LOC107734132,LOC107596124,LOC558044,LOC107663413 coding downstream 50967 13855423 ~ 13912604 (+)
cdc42ep2 LOC107548458,LOC107663424,LOC107746383,LOC107734144,LOC107661192 coding downstream 111879 13916335 ~ 13923913 (+)
dpf2 dpf2,LOC107596122,LOC107548457,LOC107734150,LOC107746382 coding downstream 122256 13926712 ~ 13937331 (+)
myo1ca LOC107746384,LOC107548455,LOC107663411,LOC107734145 coding downstream 140326 13944782 ~ 13965039 (+)
G36198 NA non-coding upstream 67371 13731969 ~ 13732456 (+)
G36191 NA non-coding upstream 78261 13720785 ~ 13721566 (+)
G36168 NA non-coding upstream 151289 13647926 ~ 13648538 (+)
G36141 NA non-coding upstream 219029 13566977 ~ 13580798 (+)
G36140 NA non-coding upstream 278219 13519973 ~ 13521608 (+)
G36332 NA non-coding downstream 170076 13974532 ~ 13974759 (+)
G36405 NA non-coding downstream 194644 13999100 ~ 14000337 (+)
G36406 NA non-coding downstream 196070 14000526 ~ 14003531 (+)
G36408 LOC107746439,LOC107663381,LOC107599230 non-coding downstream 201315 14005771 ~ 14007402 (+)
G36420 LOC107663407,LOC107599223,LOC107746393,LOC107661199 non-coding downstream 242321 14046777 ~ 14047494 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 992476 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 1094582 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 1271037 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1544155 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1856717 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 179641 13984097 ~ 13985706 (+)
G36495 NA other downstream 485964 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 495587 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 528567 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 543106 14347562 ~ 14349991 (+)

Expression


Co-expression Network