edil3a (edil3a,edil3,LOC107685241,LOC107669516)


Basic Information

Item Value
gene id edil3a
gene name edil3a,edil3,LOC107685241,LOC107669516
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17035795 ~ 17162890 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240526.1
TTTATCCCTGCGGTGCCATATCCCGCTATCTCACCTACAGAGAGAGGGTGGGATAAATCTGTGATCGGAAGGGAGGTCAGAACAGTTAAGCCGCTGTACCTGTTCACCATCAGAGCAAAAGCGCGTCTTTCCCGCGGAGAAGTGAAACGCACTGATAGTGTCCCACCCATTTGGATTTTGCCGTTCGTTCTGTGCATTGGAAGCTCCAGGGCTGCCGGGGAGGAGCGAGACTCGTCTTTATCAGTAAGACAGCGCCGCTGCTCGAGCGCTACGCTGACCGTCCGCCGCGCGCAATCACCGTTTGATCGGGACCCGCGCGGAGCCTCTCCGTTATCTCGCCGCGCGCCACTGCAGCAGAAGGGGCAAGAGGAACTCCTGAGAGGACCACTTATTTCATCTCCGCTGACCCTTCCCGGGCGAAAAACACGGACTTAACTGACACCTGTCCTGGGAGATACTTAGTCGAAACCCTTTTTCGTGTGCCTCAGAAGTTTTAACCGTCCGTACCGTTGAACGTTTGTAACCTTGGAACTCGTAGCTGCTGTTCGGTGAGGATGGGACCGTTGCTCGTCTCCATCGCCCTCTGCGTGCACCTCGCTGTCCCGCATCTCGTCAAAGCAGCAGATGGTGAGGATCCAACTTCAGCAGGACCCTGCCATCCAAACCCTTGTCACAATGGAGGCACCTGTGAAATCAGCGAAACGTTCAGGGGTGACACATTCATTGGATACGTCTGCAAGTGCCCATCAGGCTTCAACGGGATCCACTGCCAGCACAATGTTAATGAATGTGAAAGAAGCCCCTGCAGAAACGAGGGGATCTGCACAGATCTGGTTGCGAACTATTCCTGTGAATGCCCAGGGGAATATATGGGAAGAAACTGCCAgtacaAATGTTCTGGTCCACTGGGCATGGAGGGTGGAATCATCTCCAACCAGCAGATAACAGCCTCCTCCACTCACCGAGCTCTCTTCGGCCTCCAGAAATGGTACCCTTACTTTGCCCGGCTAAATAAGAAGGGTCTTGTGAATGCCTGGACTGCTGCCGAGAATGACAGATGGCCCTGGATTCAGATTAACCTACAGAGGAGGATGCGGGTCACAGGAGTGATAACCCAAGGAGCCAAGCGCATCGGGAGCCCAGAATATGTTAAGTCGTACAAAGTGGCCTACAGCGATGACGGAAAAACCTGGAGGACGTACAAAGTCAAGGGCACGGACGAAGATATAATCTTCCGTGGGAATATTGATAACAACACTCCTTTCGCCAACTCCTTCACCCCTCCTATCGAGGCTCAGTATGTGAGGATCTACCCGCAGGTGTGCAGAAGACACTGCACTCTTCGCATGGAGCTCCTGGGTTGTGAGCTCACGGGGTGTTCGGAGCCAATGGGGATGAAGTCTGGCCATATTCAGGACTACCAAATCACAGCCTCTAGCATCTTCAGAACTCTTAACATGGATATGTTCACCTGGGAACCTGGGAAAGCAAGACTGGATAAACAAGGCAAGGTCAATGCCTGGACATCTGGACATAGTGACCAGTCCCAGTGGCTGCAGGTTGATATGCTTCGGCCAACAAAAATCACAGGCGTTATTACCCAGGGGGCTAAAGACTTTGGACATGTTCAGTTTGTTGGCTCCTACAAGCTGGCTTACAGTAATAACGGCGAGAGATGGTTTATATATCAAGAcgaaaaacagaagaaagacagGGTCTTTCAAGGAAATTTTGATAATGACACCCACAGAAAGAATGTGATAGATCCTCCCATCTATGCCAGATTCATCCGGATTCTTCCATGGTCGTGGTACGGAAGAATCACTTTGCGCGCAGAGTTACTGGGATGCACAGAGGAAGAGTGAAGACCCCTTTTCATTATCCCTTTGCAACACTTTGGTCCATATTCAATATAAACTGTGCTTGTAAAACATG
>XM_043240527.1
TCCCCTTTATCCCTGCGGTGCCATATCCCGCTATCTCACCTACAGAGAGAGGGTGGGATAAATCTGTGATCGGAAGGGAGGTCAGAACAGTTAAGCCGCTGTACCTGTTCACCATCAGAGCAAAAGCGCGTCTTTCCCGCGGAGAAGTGAAACGCACTGATAGTGTCCCACCCATTTGGATTTTGCCGTTCGTTCTGTGCATTGGAAGCTCCAGGGCTGCCGGGGAGGAGCGAGACTCGTCTTTATCAGTAAGACAGCGCCGCTGCTCGAGCGCTACGCTGACCGTCCGCCGCGCGCAATCACCGTTTGATCGGGACCCGCGCGGAGCCTCTCCGTTATCTCGCCGCGCGCCACTGCAGCAGAAGGGGCAAGAGGAACTCCTGAGAGGACCACTTATTTCATCTCCGCTGACCCTTCCCGGGCGAAAAACACGGACTTAACTGACACCTGTCCTGGGAGATACTTAGTCGAAACCCTTTTTCGTGTGCCTCAGAAGTTTTAACCGTCCGTACCGTTGAACGTTTGTAACCTTGGAACTCGTAGCTGCTGTTCGGTGAGGATGGGACCGTTGCTCGTCTCCATCGCCCTCTGCGTGCACCTCGCTGTCCCGCATCTCGTCAAAGCAGATGGTGAGGATCCAACTTCAGCAGGACCCTGCCATCCAAACCCTTGTCACAATGGAGGCACCTGTGAAATCAGCGAAACGTTCAGGGGTGACACATTCATTGGATACGTCTGCAAGTGCCCATCAGGCTTCAACGGGATCCACTGCCAGCACAATGTTAATGAATGTGAAAGAAGCCCCTGCAGAAACGAGGGGATCTGCACAGATCTGGTTGCGAACTATTCCTGTGAATGCCCAGGGGAATATATGGGAAGAAACTGCCAgtacaAATGTTCTGGTCCACTGGGCATGGAGGGTGGAATCATCTCCAACCAGCAGATAACAGCCTCCTCCACTCACCGAGCTCTCTTCGGCCTCCAGAAATGGTACCCTTACTTTGCCCGGCTAAATAAGAAGGGTCTTGTGAATGCCTGGACTGCTGCCGAGAATGACAGATGGCCCTGGATTCAGATTAACCTACAGAGGAGGATGCGGGTCACAGGAGTGATAACCCAAGGAGCCAAGCGCATCGGGAGCCCAGAATATGTTAAGTCGTACAAAGTGGCCTACAGCGATGACGGAAAAACCTGGAGGACGTACAAAGTCAAGGGCACGGACGAAGATATAATCTTCCGTGGGAATATTGATAACAACACTCCTTTCGCCAACTCCTTCACCCCTCCTATCGAGGCTCAGTATGTGAGGATCTACCCGCAGGTGTGCAGAAGACACTGCACTCTTCGCATGGAGCTCCTGGGTTGTGAGCTCACGGGGTGTTCGGAGCCAATGGGGATGAAGTCTGGCCATATTCAGGACTACCAAATCACAGCCTCTAGCATCTTCAGAACTCTTAACATGGATATGTTCACCTGGGAACCTGGGAAAGCAAGACTGGATAAACAAGGCAAGGTCAATGCCTGGACATCTGGACATAGTGACCAGTCCCAGTGGCTGCAGGTTGATATGCTTCGGCCAACAAAAATCACAGGCGTTATTACCCAGGGGGCTAAAGACTTTGGACATGTTCAGTTTGTTGGCTCCTACAAGCTGGCTTACAGTAATAACGGCGAGAGATGGTTTATATATCAAGAcgaaaaacagaagaaagacagGGTCTTTCAAGGAAATTTTGATAATGACACCCACAGAAAGAATGTGATAGATCCTCCCATCTATGCCAGATTCATCCGGATTCTTCCATGGTCGTGGTACGGAAGAATCACTTTGCGCGCAGAGTTACTGGGATGCACAGAGGAAGAGTGAAGACCCCTTTTCATTATCCCTTTGCAACACTTTGGTCCATATTCAATATAAACTGTGCTTGTAAAACATG
>XM_043240528.1
CCCCTTTATCCCTGCGGTGCCATATCCCGCTATCTCACCTACAGAGAGAGGGTGGGATAAATCTGTGATCGGAAGGGAGGTCAGAACAGTTAAGCCGCTGTACCTGTTCACCATCAGAGCAAAAGCGCGTCTTTCCCGCGGAGAAGTGAAACGCACTGATAGTGTCCCACCCATTTGGATTTTGCCGTTCGTTCTGTGCATTGGAAGCTCCAGGGCTGCCGGGGAGGAGCGAGACTCGTCTTTATCAGTAAGACAGCGCCGCTGCTCGAGCGCTACGCTGACCGTCCGCCGCGCGCAATCACCGTTTGATCGGGACCCGCGCGGAGCCTCTCCGTTATCTCGCCGCGCGCCACTGCAGCAGAAGGGGCAAGAGGAACTCCTGAGAGGACCACTTATTTCATCTCCGCTGACCCTTCCCGGGCGAAAAACACGGACTTAACTGACACCTGTCCTGGGAGATACTTAGTCGAAACCCTTTTTCGTGTGCCTCAGAAGTTTTAACCGTCCGTACCGTTGAACGTTTGTAACCTTGGAACTCGTAGCTGCTGTTCGGTGAGGATGGGACCGTTGCTCGTCTCCATCGCCCTCTGCGTGCACCTCGCTGTCCCGCATCTCGTCAAAGGACCCTGCCATCCAAACCCTTGTCACAATGGAGGCACCTGTGAAATCAGCGAAACGTTCAGGGGTGACACATTCATTGGATACGTCTGCAAGTGCCCATCAGGCTTCAACGGGATCCACTGCCAGCACAATGTTAATGAATGTGAAAGAAGCCCCTGCAGAAACGAGGGGATCTGCACAGATCTGGTTGCGAACTATTCCTGTGAATGCCCAGGGGAATATATGGGAAGAAACTGCCAgtacaAATGTTCTGGTCCACTGGGCATGGAGGGTGGAATCATCTCCAACCAGCAGATAACAGCCTCCTCCACTCACCGAGCTCTCTTCGGCCTCCAGAAATGGTACCCTTACTTTGCCCGGCTAAATAAGAAGGGTCTTGTGAATGCCTGGACTGCTGCCGAGAATGACAGATGGCCCTGGATTCAGATTAACCTACAGAGGAGGATGCGGGTCACAGGAGTGATAACCCAAGGAGCCAAGCGCATCGGGAGCCCAGAATATGTTAAGTCGTACAAAGTGGCCTACAGCGATGACGGAAAAACCTGGAGGACGTACAAAGTCAAGGGCACGGACGAAGATATAATCTTCCGTGGGAATATTGATAACAACACTCCTTTCGCCAACTCCTTCACCCCTCCTATCGAGGCTCAGTATGTGAGGATCTACCCGCAGGTGTGCAGAAGACACTGCACTCTTCGCATGGAGCTCCTGGGTTGTGAGCTCACGGGGTGTTCGGAGCCAATGGGGATGAAGTCTGGCCATATTCAGGACTACCAAATCACAGCCTCTAGCATCTTCAGAACTCTTAACATGGATATGTTCACCTGGGAACCTGGGAAAGCAAGACTGGATAAACAAGGCAAGGTCAATGCCTGGACATCTGGACATAGTGACCAGTCCCAGTGGCTGCAGGTTGATATGCTTCGGCCAACAAAAATCACAGGCGTTATTACCCAGGGGGCTAAAGACTTTGGACATGTTCAGTTTGTTGGCTCCTACAAGCTGGCTTACAGTAATAACGGCGAGAGATGGTTTATATATCAAGAcgaaaaacagaagaaagacagGGTCTTTCAAGGAAATTTTGATAATGACACCCACAGAAAGAATGTGATAGATCCTCCCATCTATGCCAGATTCATCCGGATTCTTCCATGGTCGTGGTACGGAAGAATCACTTTGCGCGCAGAGTTACTGGGATGCACAGAGGAAGAGTGAAGACCCCTTTTCATTATCCCTTTGCAACACTTTGGTCCATATTCAATATAAACTGTGCTTGTAAAACATG

Function

symbol description
edil3a Predicted to enable calcium ion binding activity. Orthologous to human EDIL3 (EGF like repeats and discoidin domains 3).
edil3 Predicted to enable integrin binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within positive regulation of cell-substrate adhesion. Located in collagen-containing extracellular matrix and extracellular exosome.

NR:

description
EGF-like repeat and discoidin I-like domain-containing protein 3 isoform X2

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24464 EDIL3; EGF-like repeat and discoidin I-like domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240526.1 False 1935 mRNA 0.51 10 17035800 17162890
XM_043240527.1 True 1937 mRNA 0.51 10 17035795 17162890
XM_043240528.1 False 1909 mRNA 0.51 9 17035796 17162890

Neighbor

gene id symbol gene type direction distance location
LOC122346216 fam101a,LOC107687957,LOC107553832,LOC107684501,LOC107576363 coding upstream 481231 16543835 ~ 16554564 (+)
LOC122345769 zmat4a,zmat4,LOC107594996,LOC107587306 coding upstream 625875 16400432 ~ 16409920 (+)
LOC122345865 si:dkey-114c15.7,LOC107597238,LOC107672487,LOC107733230,LOC107592265,LOC107748635 coding upstream 646151 16379355 ~ 16389644 (+)
tmem8b tmem8b,si:dkey-84j12.1,LOC107553610 coding upstream 784023 16144894 ~ 16251772 (+)
LOC122345915 hspb11,zgc:158640,LOC107746844,LOC107681463,LOC107719933,LOC107660270 coding upstream 946882 16087941 ~ 16088913 (+)
LOC122344732 LOC107570126,LOC107742021,LOC107694705,LOC107675326,LOC107715436,LOC107574130 coding downstream 66504 17229394 ~ 17253899 (+)
LOC122344734 col27a1b,LOC107720245,LOC107672548,LOC107587699,LOC107699687,LOC107731038,LOC107720196,LOC107552608 coding downstream 97262 17260152 ~ 17316269 (+)
LOC122345236 sh2d3c,LOC107731039 coding downstream 156970 17319860 ~ 17328414 (+)
LOC122345919 camsap1,camsap1a,LOC107705949,LOC107675701,LOC107661566 coding downstream 210383 17373273 ~ 17374248 (+)
LOC122344741 otpb,LOC107720233,LOC107587559,LOC107699682,LOC107682870 coding downstream 211962 17374852 ~ 17377009 (+)
G37308 NA non-coding upstream 145818 16889197 ~ 16889977 (+)
G37291 NA non-coding upstream 208319 16827125 ~ 16827476 (+)
G37286 NA non-coding upstream 223378 16787830 ~ 16812417 (+)
G37260 NA non-coding upstream 375052 16660521 ~ 16660743 (+)
G37155 NA non-coding upstream 938790 16095985 ~ 16097005 (+)
G37330 NA non-coding downstream 187701 17350591 ~ 17350922 (+)
G37333 NA non-coding downstream 188266 17351156 ~ 17353096 (+)
G37331 LOC107720200,LOC107699749,LOC107756319,LOC107587493,LOC107703272,LOC107567144,LOC108423573 non-coding downstream 191716 17354606 ~ 17357759 (+)
LOC122345748 NA non-coding downstream 430978 17593868 ~ 17614996 (+)
G37433 NA non-coding downstream 729061 17891951 ~ 17893273 (+)
G37228 ncor2,LOC107742750 other upstream 474054 16486620 ~ 16561741 (+)
G37227 NA other upstream 475063 16474708 ~ 16560732 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 640233 16391797 ~ 16395562 (+)
G36640 NA other upstream 2315308 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 2382884 14645945 ~ 14652911 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 201959 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 363134 17526024 ~ 17527444 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other downstream 1679929 18842819 ~ 18847674 (+)
G37626 LOC107720210 other downstream 1775923 18938813 ~ 18940895 (+)
msh3 msh3,LOC107720281 other downstream 1799432 18962322 ~ 19014100 (+)

Expression


Co-expression Network