alkbh4 (alkbh4,LOC107712145,LOC107710716,LOC107681883)


Basic Information

Item Value
gene id alkbh4
gene name alkbh4,LOC107712145,LOC107710716,LOC107681883
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21997636 ~ 21999412 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240541.1
TTCGAAGGGGACGCATTTAACCGATGCACAAATGTGAGTCGATGGCTGCTGGAGAGATGCAGAACGTTAACTGTGGTTGTAAAGGTATAAGGACATGTTTGAGATGCGAGGCGGAGGAGTCTAAACTACATTTCCCTCAGAAGGACGATCTGATACATTATGATTTCGCCTATGATCCAGTGTCACAGTCAGCTGTCCAAAAGGAGTCGAGTGGCCCTCAACAGTCCTTTGCGTTTCCTGGAATATTTTTGTGGGAGAATTTTGTGTCAGAAGATGAAGAAAGGGAACTGATCACCAGAATGGATGAAGAAGTCTGGAGAGAATCTCAATCTGGCCGACGAAAACAgGACTTTGGGCCGAAGGTGAACTTCAAGAAGCAGCGCGTCCGTGTGGGAAACTTCACCGGCCTGCCTGCTATCAGCCGTCACTTGGTGGACAGGATGTCAAAGGCACCTCAGTTGGCCTCCTTCAGGCCAGTAGAGCAGTGCAACCTCGACTATGATCCCCTCAGAGGCTCTGCCATCGACCCTCATTTAGATGATAGCTGGCTGTGGGGAGAGCACCTGGTCACCGTCAACCTGCTCTCAGACACCGTCCTCACCATGAGTTTAGATCGAGGCTGGGCAGACATGGACGATGGGGAAGTGCGGGTGGCTGTGCGTTTACCACGCAGATCGCTGATTGTAGTCTACGGAGAAGCACGTCATCGGTGGAAACATGCCATCCACAGGAAGGACATTCGGGGCCGCAGAGTGTGCAGCACCTTCCGGGAGCTGTCTGAGGAGTTTCTACAGGGAGGAGAGCAGGAGAAACTGGGCTCAGAGTTGTTAGATATAGCACTGAGCTTTAAGGGTATACCTTCATAAATTGcctttattttgatatgtgAATGCACACACAACTGTAAAGTGATTATTTTTAActcttaatttaaataaatgcatattcttttta
>XM_043240542.1
CAAATGTGAGTCGATGGCTGCTGGAGAGATGCAGAACGTTAACTGTGGTTGTAAAGGTATAAGGACATGTTTGAGATGCGAGGCGGAGGAGTCTAAACTACATTTCCCTCAGAAGGACGATCTGTGTCACAGTCAGCTGTCCAAAAGGAGTCGAGTGGCCCTCAACAGTCCTTTGCGTTTCCTGGAATATTTTTGTGGGAGAATTTTGTGTCAGAAGATGAAGAAAGGGAACTGATCACCAGAATGGATGAAGAAGTCTGGAGAGAATCTCAATCTGGCCGACGAAAACAgGACTTTGGGCCGAAGGTGAACTTCAAGAAGCAGCGCGTCCGTGTGGGAAACTTCACCGGCCTGCCTGCTATCAGCCGTCACTTGGTGGACAGGATGTCAAAGGCACCTCAGTTGGCCTCCTTCAGGCCAGTAGAGCAGTGCAACCTCGACTATGATCCCCTCAGAGGCTCTGCCATCGACCCTCATTTAGATGATAGCTGGCTGTGGGGAGAGCACCTGGTCACCGTCAACCTGCTCTCAGACACCGTCCTCACCATGAGTTTAGATCGAGGCTGGGCAGACATGGACGATGGGGAAGTGCGGGTGGCTGTGCGTTTACCACGCAGATCGCTGATTGTAGTCTACGGAGAAGCACGTCATCGGTGGAAACATGCCATCCACAGGAAGGACATTCGGGGCCGCAGAGTGTGCAGCACCTTCCGGGAGCTGTCTGAGGAGTTTCTACAGGGAGGAGAGCAGGAGAAACTGGGCTCAGAGTTGTTAGATATAGCACTGAGCTTTAAGGGTATACCTTCATAAATTGcctttattttgatatgtgAATGCACACACAACTGTAAAGTGATTATTTTTAActcttaatttaaataaatgcatattcttttta

Function

symbol description
alkbh4 Predicted to enable actin binding activity; demethylase activity; and oxidoreductase activity. Acts upstream of or within regulation of actomyosin structure organization. Predicted to be active in contractile ring and midbody. Is expressed in blastomere; forebrain; midbrain; oocyte; and otic vesicle. Orthologous to human ALKBH4 (alkB homolog 4, lysine demethylase).

NR:

description
alpha-ketoglutarate-dependent dioxygenase alkB homolog 4

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG:

id description
K10766 ALKBH4; DNA N6-methyl adenine demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240541.1 True 954 mRNA 0.49 3 21997636 21999412
XM_043240542.1 False 898 mRNA 0.49 3 21997636 21999384

Neighbor

gene id symbol gene type direction distance location
lrwd1 LOC107712122,LOC107587741,LOC107681902,LOC107710709 coding downstream 219 21989945 ~ 21997417 (-)
bckdk bckdk,LOC107685622,LOC107681895,LOC106603456 coding downstream 13417 21967987 ~ 21984219 (-)
orai2 orai2,LOC107685638,LOC107595471,LOC107710735,LOC107681896 coding downstream 30500 21961430 ~ 21967136 (-)
LOC122346220 NA coding downstream 37752 21959785 ~ 21959884 (-)
ap2b1 ap2b1,LOC107681897,LOC107685655 coding downstream 44610 21925498 ~ 21953026 (-)
polr2j polr2j,LOC107587688,LOC107595521,LOC107681903 coding upstream 82 21999494 ~ 22001615 (-)
castor2 gatsl2,LOC107685562,LOC107587690,LOC107595468,LOC107681899 coding upstream 21255 22020667 ~ 22036314 (-)
doc2b doc2b,LOC107681901,LOC107685552,LOC106603746,LOC107587692 coding upstream 45887 22045299 ~ 22116025 (-)
LOC122345718 doc2b,LOC107587692,LOC107710708,LOC107689386,LOC107714896 coding upstream 138427 22137839 ~ 22211535 (-)
tmem248 tmem248,LOC107714897,LOC107572429,LOC107691774,LOC107689376,LOC107587695,LOC107710724 coding upstream 215927 22215339 ~ 22227188 (-)
G38523 NA non-coding downstream 121051 21867615 ~ 21876585 (-)
G38521 NA non-coding downstream 130175 21867128 ~ 21867461 (-)
LOC122345027 NA non-coding downstream 157536 21836313 ~ 21840100 (-)
G38515 LOC107712155,LOC107595525,LOC107685724 non-coding downstream 157963 21839359 ~ 21839673 (-)
G38510 sepw1,LOC107685796,LOC107587735 non-coding downstream 167904 21821476 ~ 21829732 (-)
G38543 NA non-coding upstream 9474 22008886 ~ 22010107 (-)
LOC122344815 NA non-coding upstream 38948 22038360 ~ 22041267 (-)
LOC122346224 NA non-coding upstream 40489 22039901 ~ 22040034 (-)
G38634 NA non-coding upstream 792278 22791690 ~ 22793053 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding upstream 874559 22873971 ~ 22876437 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 113614 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 171531 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 378053 21612688 ~ 21619583 (-)
G38359 NA other downstream 628588 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 1061539 20906043 ~ 20936097 (-)
nrgna nrgna other upstream 1127800 23127212 ~ 23132008 (-)
LOC122345364 NA other upstream 1602824 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 1752468 23751880 ~ 23756588 (-)
G38973 NA other upstream 1887891 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 1980252 23979664 ~ 23997739 (-)

Expression


Co-expression Network