polr2j (polr2j,LOC107587688,LOC107595521,LOC107681903)


Basic Information

Item Value
gene id polr2j
gene name polr2j,LOC107587688,LOC107595521,LOC107681903
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21999494 ~ 22001615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240544.1
CGCGCTGTGCGCCGCGCATGCGCTGTACGCTGCGTGCGTCCGTTAGCGTCGTCGCTGTCGTCTTTCGAGCAGGATGAACGCGCCACCGGCATTCGAGTCGTTTTTGCTTTTTGAGGGAGAAAAGAAgATCACAATAGTCAAGGACACCAAGGTGCCAAATGCATGTCTGTTTACGCTGAATAAAGAGGATCACACACTGGGGAACATCATTCGGTCGCAACTGCTGAAGGACCCTCAGGTGCTGTTTGCTGGATACAAGGTTCCTCATCCTCTGGAGCACAAGATAGTGATCCGCGTTCAGACGACGCCAGACTACAGTCCCCAGGAAGCCTTCACTAATGCCATCACTGATCTGATCAGTGAACTGTCCCTTCTGGAGGAGCGTTTCAGGGTTGCCATCAAAGACAAACAAGAGGGGATAGAATGAAGACCATCACACTCCATTGGATCTCAACAACTAATTCACAGTGGACTGAATTGTCAGTCTTGAGAACTCTTTCTAGAATGGGCTACAGTattcccatttatttattttcatgaaaaattatGAGGACATTTGACAAGCTCATATTACCAATAATAAGAGATCTAGACCAGCTTCTAACAGCATTGAATTTAAGATGTATGGAGTTCTTCCTTCTGTGTTGATTTTCTAACAAAGCATGATGGTATAATGTAATCAACAAATGTGAACATATTTCATCACACACCAGATTTGTGTACATGGAAATAACGTCCTCTTCATCGTCCCACTCATTTGTGatgtaggttttttttctattaataaattgactttttgtaatgaaa

Function

symbol description
polr2j Predicted to enable DNA binding activity; RNA polymerase II activity; and protein dimerization activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Orthologous to several human genes including POLR2J (RNA polymerase II subunit J).

NR:

description
DNA-directed RNA polymerase II subunit RPB11-a

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function

KEGG:

id description
K03008 RPB11, POLR2J; DNA-directed RNA polymerase II subunit RPB11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240544.1 True 807 mRNA 0.43 4 21999494 22001615

Neighbor

gene id symbol gene type direction distance location
alkbh4 alkbh4,LOC107712145,LOC107710716,LOC107681883 coding downstream 82 21997636 ~ 21999412 (-)
lrwd1 LOC107712122,LOC107587741,LOC107681902,LOC107710709 coding downstream 2077 21989945 ~ 21997417 (-)
bckdk bckdk,LOC107685622,LOC107681895,LOC106603456 coding downstream 15275 21967987 ~ 21984219 (-)
orai2 orai2,LOC107685638,LOC107595471,LOC107710735,LOC107681896 coding downstream 32358 21961430 ~ 21967136 (-)
LOC122346220 NA coding downstream 39610 21959785 ~ 21959884 (-)
castor2 gatsl2,LOC107685562,LOC107587690,LOC107595468,LOC107681899 coding upstream 19052 22020667 ~ 22036314 (-)
doc2b doc2b,LOC107681901,LOC107685552,LOC106603746,LOC107587692 coding upstream 43684 22045299 ~ 22116025 (-)
LOC122345718 doc2b,LOC107587692,LOC107710708,LOC107689386,LOC107714896 coding upstream 136224 22137839 ~ 22211535 (-)
tmem248 tmem248,LOC107714897,LOC107572429,LOC107691774,LOC107689376,LOC107587695,LOC107710724 coding upstream 213724 22215339 ~ 22227188 (-)
lig3 lig3,LOC107691772,LOC107710722,LOC107689374 coding upstream 229265 22230880 ~ 22240821 (-)
G38523 NA non-coding downstream 122909 21867615 ~ 21876585 (-)
G38521 NA non-coding downstream 132033 21867128 ~ 21867461 (-)
LOC122345027 NA non-coding downstream 159394 21836313 ~ 21840100 (-)
G38515 LOC107712155,LOC107595525,LOC107685724 non-coding downstream 159821 21839359 ~ 21839673 (-)
G38510 sepw1,LOC107685796,LOC107587735 non-coding downstream 169762 21821476 ~ 21829732 (-)
G38543 NA non-coding upstream 7271 22008886 ~ 22010107 (-)
LOC122344815 NA non-coding upstream 36745 22038360 ~ 22041267 (-)
LOC122346224 NA non-coding upstream 38286 22039901 ~ 22040034 (-)
G38634 NA non-coding upstream 790075 22791690 ~ 22793053 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding upstream 872356 22873971 ~ 22876437 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 115472 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 173389 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 379911 21612688 ~ 21619583 (-)
G38359 NA other downstream 630446 21364238 ~ 21369048 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other downstream 1063397 20906043 ~ 20936097 (-)
nrgna nrgna other upstream 1125597 23127212 ~ 23132008 (-)
LOC122345364 NA other upstream 1600621 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 1750265 23751880 ~ 23756588 (-)
G38973 NA other upstream 1885688 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 1978049 23979664 ~ 23997739 (-)

Expression


Co-expression Network