LOC122345984 (si:ch211-106a19.1,LOC107599964,LOC107744438,LOC107730710,LOC107592368,LOC103470291,LOC106959535,LOC107672777)


Basic Information

Item Value
gene id LOC122345984
gene name si:ch211-106a19.1,LOC107599964,LOC107744438,LOC107730710,LOC107592368,LOC103470291,LOC106959535,LOC107672777
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10690779 ~ 10701390 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240585.1
CAGCGGCCCCGGCAGGATCGTGTCCTTTCTCACCGCAGTTCCGTGCTTATCCTGCAAAcagcagcggcggcggcggcggcggcatCATCAGTCTGCGGCAGTGGACCGGGGCAGGAGGAGCGTGAGCATGAGCGAGCAGGGCAAGAGTGCCGCGTCCACGCCAGCGAGCGGGACACCGGCCCCGGGCTCGGACACCTACAAAGGCTGGCTCTTTAAATGGACTAACTACATCAAAGGTTACCAGCGCAGATGGTTCGTGCTCAGCAACGGACTGCTGTCCTATTACAGGACGCAGGCAGAGATGGCCCATACGTGCCGCGGCACCATCAACCTGGCCACAGCTCACATCGACACCGAAGACGCCTGCAATATTGTTCTGAGCAGTGGGGGGCGCACTTACCATCTGAAAGCCAGCACAGAGGTGGAGAGGCAGAGATGGGTCACAGCGCTGGAGCTGGCCAAGGCCAAAGCCATCCGAATGATGAACGATCAGTCCGGGTTGGTGTGTAGTTCAGAGTGTTTGCAGAAAATCACAGGGCTCAGCAATAAGAATTTTCTTCTTCCGGTCCAGTCAGGAGAGCAAATTTACACTGGCCATGTCATTTGATTTTCC
>XM_043240586.1
GGGGAGTGCGCCGTGTCTCTCTCCCTGCCCCagaccctcctcctcctcctctggtAGCCCGTCCATCTCAGAGCATCGGCGcagcggcggcggcggcggcggcatCATCAGTCTGCGGCAGTGGACCGGGGCAGGAGGAGCGTGAGCATGAGCGAGCAGGGCAAGAGTGCCGCGTCCACGCCAGCGAGCGGGACACCGGCCCCGGGCTCGGACACCTACAAAGGCTGGCTCTTTAAATGGACTAACTACATCAAAGGTTACCAGCGCAGATGGTTCGTGCTCAGCAACGGACTGCTGTCCTATTACAGGACGCAGGCAGAGATGGCCCATACGTGCCGCGGCACCATCAACCTGGCCACAGCTCACATCGACACCGAAGACGCCTGCAATATTGTTCTGAGCAGTGGGGGGCGCACTTACCATCTGAAAGCCAGCACAGAGGTGGAGAGGCAGAGATGGGTCACAGCGCTGGAGCTGGCCAAGGCCAAAGCCATCCGAATGATGAACGATCAGTCCGGGTTGGTGTGTAGTTCAGAGTGTTTGCAGAAAATCACAGGGCTCAGCAATAAGAATTTTCTTCTTCCGGTCCAGTCAGGAGAGCAAATTTACACTGGCCATGTCATTTGATTTTCC
>XM_043240587.1
CAGCGGCCCCGGCAGGATCGTGTCCTTTCTCACCGCAGTTCCGTGCTTATCCTGCAAAcagcagcggcggcggcggcggcggcatCATCAGTCTGCGGCAGTGGACCGGGGCAGGAGGAGCGTGAGCATGAGCGAGCAGGGCAAGAGTGCCGCGTCCACGCCAGCGAGCGGGACACCGGCCCCGGGCTCGGACACCTACAAAGGCTGGCTCTTTAAATGGACTAACTACATCAAAGGTTACCAGCGCAGATGGTTCGTGCTCAGCAACGGACTGCTGTCCTATTACAGGACGCAGGCAGAGATGGCCCATACGTGCCGCGGCACCATCAACCTGGCCACAGCTCACATCGACACCGAAGACGCCTGCAATATTGTTCTGAGCAGTGGGGGGCGCACTTACCATCTGAAAGCCAGCACAGAGGTGGAGAGGCAGAGATGGGTCACAGCGCTGGAGCTGGCCAAGGCCAAAGCCATCCGAATGATGAACGATCAGTCCGACAATGGCTCCACAGCCCCGCTAACACACTGTTATCAGTCTGGTAAGGTGACTGGTCTTCTTACGGAGGCTTTGCATCATGTTTGCAGGGTTGGTGTGTAGTTCAGAGTGTTTGCAGAAAATCACAGGGCTCAGC

Function

NR:

description
PREDICTED: oxysterol-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240585.1 False 613 mRNA 0.58 3 10690892 10701390
XM_043240586.1 True 633 mRNA 0.59 4 10690779 10701390
XM_043240587.1 False 632 mRNA 0.59 3 10690892 10701321

Neighbor

gene id symbol gene type direction distance location
rasl10a rasl10a,LOC107672696,LOC107744439,LOC107730711,LOC107592305,LOC107599975 coding upstream 3741 10673979 ~ 10687038 (+)
ap1b1 ap1b1,LOC107599930 coding upstream 18209 10647593 ~ 10672570 (+)
gas2l1 gas2l1,LOC107673400,LOC107744437,LOC107599929,LOC107592306,LOC107672792,LOC107730708 coding upstream 43636 10621657 ~ 10647143 (+)
ewsr1b LOC107599962,LOC107744436,LOC107673396,LOC107592307,LOC107672746 coding upstream 70887 10611574 ~ 10619892 (+)
emid1 emid1,LOC107599927,LOC107744434,LOC107673410,LOC107730716,LOC107672770,LOC107592308 coding upstream 81912 10552975 ~ 10608867 (+)
trmt2a trmt2a,LOC107687689,LOC107672731 coding downstream 48011 10749401 ~ 10754264 (+)
tia1l tia1l,LOC107726385,LOC107592301,LOC107672787,LOC107599933,LOC107744444 coding downstream 61049 10762439 ~ 10768631 (+)
znf703 znf703,LOC107599934,LOC107687685,LOC107744445,LOC107726392,LOC107672788,LOC107592299 coding downstream 168948 10870338 ~ 10874092 (+)
si:ch211-137i24.12 LOC107744495,LOC107687707,LOC107599977 coding downstream 203544 10904934 ~ 10908357 (+)
phf23a phf23a,LOC107599938,LOC107744450,LOC107687682,LOC107726379,LOC107592297,LOC107672758 coding downstream 217383 10918773 ~ 10922782 (+)
G35081 NA non-coding upstream 143154 10547221 ~ 10547625 (+)
G35043 NA non-coding upstream 356971 10333219 ~ 10333808 (+)
G35042 NA non-coding upstream 360457 10329889 ~ 10330322 (+)
G35041 NA non-coding upstream 363318 10327031 ~ 10327461 (+)
G35040 NA non-coding upstream 364065 10325866 ~ 10326714 (+)
G35197 NA non-coding downstream 112067 10813457 ~ 10816301 (+)
G35202 NA non-coding downstream 136622 10838012 ~ 10838367 (+)
G35229 NA non-coding downstream 243666 10945056 ~ 11019192 (+)
G35267 NA non-coding downstream 485864 11187254 ~ 11187694 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding downstream 503110 11204500 ~ 11209405 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 551046 10064217 ~ 10139733 (+)
si:ch211-102c2.4 NA other upstream 891421 9796381 ~ 9799358 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 1819261 8864202 ~ 8871518 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 2385333 8289720 ~ 8305446 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 2680180 8001578 ~ 8010599 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 16141 10717531 ~ 10736059 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 225433 10926823 ~ 10933753 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 345089 11046479 ~ 11064446 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other downstream 434833 11136223 ~ 11150225 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 565252 11266642 ~ 11303431 (+)

Expression


Co-expression Network