grsf1 (grsf1,LOC107746834,LOC107680726,LOC107579879)


Basic Information

Item Value
gene id grsf1
gene name grsf1,LOC107746834,LOC107680726,LOC107579879
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15875593 ~ 15878477 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240598.1
TAGTTGACGTAATACTGTCCTCTGATGCCGCAGGTCAACGTGATTTTTTTTGGGAAGTCAGGGTTTCAGCTAAATTTTAAATTGAAGTTCTGTACATTACAAGATGTCTGTATTGAGTAGGAGCGCgcttttgttgtcttttgttcGCTGTATCAGGAGAAAGCAGCGGCTACCGTGCGTGGATActctaaattatattaaaactgcGCAGTTTGCACTAGCACGAGGTCGAGATGTTCATTCGTCGCCAGCGAGATATTTTGCAGATCATGAAGTCAAGCATCCGTGGACATTATATCACCGAAGACTATATTCTGAGgCACCACCTGATAACGACGAGTACCCACCATTACCAGAATACATCGTGTATGAGGAGCCCAAAGCAAAGGAAGTGTTCATCATCCAGGCCAAGGGATTTCCTTGGTCATGTACCGCAGACGACTTGATGAACTTCTTTTCTGATTGTAGGATCCGAGGTGGAGTTGAGGGAATCCATATAATTCACAACAAAAATGGCAAATCGACCGCACAGGCGTTTATTGAGCTGGAGCACGAGGAGGACATTTGCAAAGCATTGAATCTGCACAAACACTACCTGGGACAACGCTTTGTTGAAGTGTATGAGGTAACAAACAAAGACGCTGAAGCCATATTAAAAGCGTCCGTGCAGTTTACAGAGTCCGATGGAGTGGTGCGACTCAGAGGGCTTCCCTTCAGCTGCTCAGAAAAAGACATCATTCGCTTTTTCTCTGGGTTAGAGATTGTGGAAGATGGAGTTACAATAGTCCTGGACAGGAAAGGGAGAAACTCAGGTGATGCCTTTGTGCAGTTTTCCACGAAGGAAATGGCTGAAGAGGCcttaaagaaagacagagaagtCATGGGAAACAGGTATATTGAGATTTTCCCTAGCAAGAAAAGCGAGATTCATGTCCAGTATAGGCGGCGGTGAGATGAAATACCAGCATCACGCACTGAGAgcacatcacacacaatgaaagCAGCAAACAGTAGCTTTATATCAACAACACAAAACTTCATTCATATGAGAGGTCTGCCATATGATGCCACAGGAGAAGACATTGTAAAGTTTTTTGCTCCTATCAGACTGGTGAAGATTGTTGTAGAGTACGACCCTGACGGACGACCCACCGGTGAGGCAGAGGCCTACTTCAGAACACATCAAGATGCCGTTTTAGCCATGTCCAAAGACAGAGAGTATATAAGTAAGCGATATATTGAGCTGTTTTTGAATTCATCAGCATCGAGGGAGAAACAATAAGATGAACGTAAACTATTTAAACTGTCTTCATGCACTGCGTCCTGGCTTAATGGAAGTGATTCAGCATGTATTACAAGAATACATAAAACCAACATTAAAAAGAA

Function

symbol description
grsf1 Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Orthologous to human GRSF1 (G-rich RNA sequence binding factor 1).

NR:

description
G-rich sequence factor 1-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K24984 GRSF1; G-rich sequence factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240598.1 True 1386 mRNA 0.43 9 15875593 15878477

Neighbor

gene id symbol gene type direction distance location
LOC122345991 LOC107718358,LOC107553579,LOC107676641,LOC107680767,LOC107746876 coding downstream 24945 15849821 ~ 15850648 (-)
LOC122345699 LOC107718358,LOC107553579,LOC107676641,LOC107680767,LOC107746876 coding downstream 31749 15842993 ~ 15843844 (-)
flot2a flot2,flot2a,LOC107746832,LOC107676660 coding downstream 36876 15821869 ~ 15838717 (-)
ncor1 ncor1,LOC107676644,LOC107746860,LOC107553567,LOC107680951,LOC107552540 coding downstream 191157 15616601 ~ 15684436 (-)
LOC122345891 NA coding downstream 259131 15614467 ~ 15616462 (-)
si:dkey-245n4.2 si:dkey-245n4.2,LOC107746839,LOC107580348 coding upstream 36887 15915364 ~ 15922607 (-)
rtkna rtkn,si:dkey-40c11.1,LOC107676668,LOC107746864,LOC107681349,LOC107718341 coding upstream 136309 16014786 ~ 16066861 (-)
smn1 smn1,LOC107660268,LOC107553605,LOC107719932,LOC107681471,LOC107746843,LOC107552536 coding upstream 206341 16084818 ~ 16087410 (-)
mccc2 mccc2,LOC107746845,LOC107680610,LOC107552565,LOC107660263,LOC107553609,LOC107719925 coding upstream 210588 16089065 ~ 16095337 (-)
LOC122346134 LOC107681310 coding upstream 217271 16095748 ~ 16114424 (-)
G37058 LOC107718333,LOC107746835,LOC107552574,LOC107680737,LOC107676661 non-coding downstream 10433 15861077 ~ 15865160 (-)
G37064 NA non-coding downstream 61660 15812915 ~ 15813933 (-)
G37079 NA non-coding downstream 92588 15777713 ~ 15783005 (-)
G37076 NA non-coding downstream 126096 15747522 ~ 15749497 (-)
G37067 NA non-coding downstream 145700 15729203 ~ 15729893 (-)
G37092 NA non-coding upstream 16207 15894684 ~ 15978740 (-)
G37093 aqp3a,LOC107552570,LOC107746837,LOC107680708,LOC107553599 non-coding upstream 27806 15906283 ~ 15910873 (-)
G37098 NA non-coding upstream 59643 15938120 ~ 15938836 (-)
G37212 NA non-coding upstream 452454 16330931 ~ 16332077 (-)
G37239 NA non-coding upstream 511447 16389924 ~ 16482086 (-)
cxcl20 NA other downstream 16258 15857240 ~ 15859335 (-)
cxcl11.1 LOC107680787,LOC107552555,LOC107718351,LOC107553572,LOC107676630 other downstream 19785 15854920 ~ 15855808 (-)
LOC122345695 LOC107718358,LOC107553579,LOC107676641,LOC107680767,LOC107746876 other downstream 28557 15846036 ~ 15847036 (-)
cxcl11.4 LOC107718357,LOC107746875,LOC107553578,LOC107676639,LOC107680777,LOC107552559,LOC107553571 other downstream 33915 15840326 ~ 15841678 (-)
fam222ba LOC107552581,LOC107746861,LOC107680853,LOC107676666,LOC107553569,LOC107680837,LOC107552580,LOC107746822,LOC107746829,LOC107680824,LOC107552579,LOC107676664,LOC107553594,LOC107718349 other downstream 67213 15742740 ~ 15808380 (-)
LOC122344710 LOC107755722,LOC107681456,LOC107700059,LOC107553585,LOC107727439 other upstream 375475 16253952 ~ 16256992 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other upstream 497789 16376266 ~ 16378515 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other upstream 718378 16596855 ~ 16633121 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other upstream 808783 16687260 ~ 16713167 (-)
LOC122345693 NA other upstream 909332 16787809 ~ 16859931 (-)

Expression


Co-expression Network