nccrp1 (nccrp1,LOC107548479,LOC107757518,LOC107693441,LOC107596142,LOC107700228,LOC107746425)


Basic Information

Item Value
gene id nccrp1
gene name nccrp1,LOC107548479,LOC107757518,LOC107693441,LOC107596142,LOC107700228,LOC107746425
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13528351 ~ 13530862 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240619.1
CTCTTCCGAACCGGTTTTCTGGGTGGGGCAGACCGTAATAAAAACACGTGTCTGCTGTGTGTGGACTGCGAAGAAAACAGTCTGAAATGGCGGCTGACTGGAAACAGAAGTGTGCCTCGCAGTGGCAGCTGGGGGCTCTCGGTGTCCCTACGCCCGACGGCGTGGACTGGAAATCGGTGTTTGAGAAGAAGCCGTTTGAACGCAACCTACTGAAGAACCCCTCGCCTTACGGTGTAAGCCACAGCATCCCACCCCCCGAAACCCCTCGATCGGGAATGCCTCCTCCTTCAAGCCAGCCCCCTCAGTTTGAGCCCAACGGTAATTTCACTGGCTGGAAAACTAGTACAGAAGTTTTACCATATGACACTAGTGGAATTCCCCCAAGGGCTGTGGTCTGCTATCTGCCTCAGTTCAGGTGGTTCTCCTTGGAGCAGTGTGTGGACCTGAAGGCTGAGGGTCTATGGGACCAACTGCTGGATGACTTTCAGCCTGAGATCGTCATTGAGGACTGGTATGAGGAAAGTCAGCTTCATAAATCTATCTATCAGCTTGATGTGAAGCTCTTGGGTGCTGATGGTAAGACCGTTATCAAGCAGCACACATATAACCCTGAAGAGAACCTGGAGGTCTACTCGCACACCTGGAAGAAGGTCTCGCATGTATTCTCCAAGTATGGGTCAGGAGTGCGGTACATTCACTTCCTCCACAAACTGAAGAACCAGTTCATGGTTGAATTCTTTAATACCAAAGTCACAGACAGCTCGATTATTATCAAGACCAGCAAAGCCAGTGTAAAATAatcacagtcaaaaaaaaaaaactggtagGAGTTGATACACACTGTAGAgtttgtattttgaataaagCAATTGTCTTGTCTGCAAGGTTTTTATAAATTAACTGCACTTTCATAACATGTATCTAGCAagttaatactgtaataaaacattcctcattca

Function

symbol description
nccrp1 Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; glycoprotein catabolic process; and ubiquitin-dependent ERAD pathway. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm. Is expressed in blood; cloaca; and head kidney. Orthologous to human NCCRP1 (NCCRP1, F-box associated domain containing).

NR:

description
F-box only protein 50

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240619.1 True 959 mRNA 0.47 6 13528351 13530862

Neighbor

gene id symbol gene type direction distance location
mark4a mark4a,LOC107746361,LOC107596145,LOC107700234,LOC105006905,LOC107693438,LOC108444027 coding upstream 11167 13498184 ~ 13517184 (+)
exoc3l2a LOC107746360,LOC107700233,LOC107548482,LOC107757547,LOC107596146,LOC107700224 coding upstream 40408 13476178 ~ 13487943 (+)
ppp1r14aa ppp1r14aa,LOC107596215,LOC107746358,LOC107548483,LOC107655902,LOC107757548 coding upstream 53342 13471000 ~ 13475009 (+)
dlb dlb,LOC107746357,LOC107596148,LOC107683914,LOC108260005,LOC108444019 coding upstream 57470 13465532 ~ 13470881 (+)
zgc:153990 LOC107548484,LOC107746356,LOC107700225,LOC107655905,LOC107757517,LOC107596149 coding upstream 68241 13454506 ~ 13460110 (+)
slc8a2a slc8a2a,LOC107757550,LOC107693442,LOC107596143 coding downstream 415 13531277 ~ 13548200 (+)
srsf7a LOC107700237,LOC107746364,LOC107548478,LOC107757551,LOC107596141,LOC107693444 coding downstream 18158 13549020 ~ 13552417 (+)
hnrnpl hnrpl,LOC107700238,LOC107693443,LOC107757553,LOC107548476 coding downstream 23136 13553998 ~ 13563864 (+)
crx crx,LOC107596137,LOC107700239,LOC107757554,LOC107693445,LOC107548475,LOC107746366,LOC105892503 coding downstream 42355 13573217 ~ 13575410 (+)
gjd1a gjd1a,LOC107700241,LOC107548473,LOC107746368,LOC107710581,LOC107596136,LOC103027887,LOC108437049 coding downstream 58320 13589182 ~ 13600365 (+)
G36140 NA non-coding upstream 6743 13519973 ~ 13521608 (+)
G36109 NA non-coding upstream 203968 13324033 ~ 13324383 (+)
LOC122345423 NA non-coding upstream 215699 13299755 ~ 13312652 (+)
G36062 NA non-coding upstream 419498 13108632 ~ 13108853 (+)
G35905 NA non-coding upstream 642417 12885331 ~ 12885934 (+)
G36141 NA non-coding downstream 36115 13566977 ~ 13580798 (+)
G36168 NA non-coding downstream 117064 13647926 ~ 13648538 (+)
G36191 NA non-coding downstream 189923 13720785 ~ 13721566 (+)
G36198 NA non-coding downstream 201107 13731969 ~ 13732456 (+)
G36332 NA non-coding downstream 443670 13974532 ~ 13974759 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 721000 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 823106 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 999561 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1272679 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1585241 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 453235 13984097 ~ 13985706 (+)
G36495 NA other downstream 759558 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 769181 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 802161 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 816700 14347562 ~ 14349991 (+)

Expression


Co-expression Network