taf6 (taf6,LOC103372846)


Basic Information

Item Value
gene id taf6
gene name taf6,LOC103372846
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24759478 ~ 24782648 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240635.1
TCCGGTAAATTCAAAATGGCGGATTTTCGGAAAAATGGTTCGGAGCTAAACAGGGTAGATCAAgtataaatacagaaaacaacaaacaatacatcGGATAAATTAACAGTTAGCTGTACTGATACAAAGTGAGCAGCCGTAAACAAGggatttgcttgttttattcgAGTTTTATCGTTTTAACTTTGTAGCATCCTCTTTTAAAGAGTGAGACATGGCAGAGGAGCGCAGACAGAAGCTGTGTTCGGTGATCTTGCCCACAGAATCCATGAAGGCGATGGCGGAGTCAGTGGGAGTGGGCTCCCTGCAGGAAGACAGCTGTCTGGCCCTCAGTGAAGAGGTCAGCTACAGGATCAAAGAGATCACCCAGGACGCACTGAAGTTTATGCACCACGGTAAAAGACGCAAACTTACTACAGGCGACATTGACCACGCTCTTAAACTGAAAAACGTGGAGCCTCTGTATGGATTTCAGTCTCAAGAGTTTATCCCATTTCGCTTTGCAAGTGGAGGCGGCAGAGAATTGCACTTCTATGAAGAAAAGGAAGTGGATCTTAGTGATATCATCAACACACCCCTCCCTAGAGTCCCTCTTGATGTTTCGCTCAAAGCTCACTGGTTAAGTATCGATGGTGTCCAGCCTGCGATACCAGAGAACCCACCTCCAGTTCCTAAAGAGCAGCAAAAGACAGATTCCACAGAGCCACTCAAAGCTGTCAAACCtggacaggaagaggaaggcTCTATCCAGGCCAAGGGTCAGAGTGCAAGCTCTGCTGAAGTCAAAgGAAAAGAGAAGATGCGGATGAAACCACGTAGCACACATGAGCTCTCTGTAGAGCAGCAGCTCTACTATAAAGAAATCACAGAAGCTTGTGTGGGATCCTGTGAAGCCAAAAGAGcgGAAGCACTGCAGAGCATAGCAACAGACCCAGGGCTATACCAGATGCTGCCAAGATTCAGTACCTTCATCTCTGAGGGTgtccGCGTAAATGTCGTTCAGAATAACCTGGCTCTGCTGATATACTTAATGAGGATGGTGAAGGCTTTAATGGACAATCCAACTCTATATTTAGAGAAATATCTGCATGAGTTGATTCCAGCTGTAGTGACGTGTATTGTGAGTAAGCAGCTATGTCTGAGACCTGATGTGGACAATCACTGGGCTCTGCGAGACTTTGCTGCCCGGCTGATGGCTCAGAGCTGCAAGACTTTTAGCACAACAACCAACAACATCCAGTCACGCATCACCAAGACCTTTACTAAGGCATTGTTGGATGATAAAACTCAGTGGACAACTCGTTATGGCTGCATTGCTGGGCTTGCAGAGCTTGGGCATGATGTGATAAAGACATTGATCATCCCCCGGCTATCTGTTGAAGGTGCTCGTATTAAAGCTGTGATGGATGGACCAGTGGTGTCCAACATTGATAAGATTGGAGCTGATCATGTCCAGAGTCTATTACTGAAACACTGCGCAAGTGTGGTTGCTAAAACTAGACCACTCCCAGATGTAGTGGATCAGTACAAGGCAGATTATGGTTATCTTGGCACCATGCTTTGTTCACATGTGGTAAAGGCCCGTGCACAGGCTGCTTTCCAGGCCCAAACTGTTAACAGAACCACACTTACTATCACACAGCCTCGCCCAACCCTGTCAGTGTCTCAGAGTGGATTATCAGCATCAAGTGGTTCACGCACACCCAGCATTATTAAAGTTCCTGGTTCACTAAGCCTCATTTCCACTCGCCCTGGAACACCCACCCAGCCTTCACCCCCAGCAACCAAATATATAGTCATGGCAACAAGTGCAGGAGCTGCATCCACTCAGCAGGTAATCACTCTCAGCTCCTCCCAGTCTGGCTCTCCTGTCACAAGTACAGTGCCCAGCACCCCCACTTCTTTACAGCCACTCGTCAAAATGGAGTCCGGAAACACGGGTGCTGTGAGCGGCTCGCGCCCTCTTCAGAAATACATTGTGGTGTCTTTACCATCATCGTCTTCCTCACTGGAGAACAAGGGCTCTGGTGTCCTCCCGTCCTCTACCTCACCAATCAGCATGGAGTCAGCTGTCAAGCTGGAACGCTCGGAATCACCGGCTGCGAACACGCAGTCGCCACATTGAAACTCACATTTGCTTACACCACCAAGATACAGAAGAACAATACATGTAGCTTAAGACTTGTAATCGTGCTTACACATTACTTTCAAACAAACTGACACACGTGAATTAGCAAAGCGAGCAAATAGCTATGCACACTTTGACCGTAAGACTCACTCACAGATATTTACACTGTGTACATAGAGCATATATCCagtgtgtgtaaaaacattcGTAATCAATCATGTATacacaaatactgtatatataaaaatagttgttGTGGCTGAAAGCACAGAGAAGCTGTAACAATGACAgccatacacacatacagaatgGAAATTGATTGTgggggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgatagcaCAAGTCTTCAGGGTTTAGCTGTAGCCATGCTTCATTCATGAACGTAAGGATATGGTTGTATTTATAATTGGAAAAGGAACAATAGATGTGGAATGTGTGGGGAGAAAAAATGCGAGACAAGTGGGTTCATCACTGTCTAATCTACATTTGTATACTTAAGCACATGCTTGCTTCATGTATAAAAACTGGGCATTTATAGGGTTTAATGAACCGTTTAACTGATTTActgtttcatgtttattttggatcttctataataaagatgtttttgttttttttttaaa
>XM_043240636.1
TCCGGTAAATTCAAAATGGCGGATTTTCGGAAAAATGGTTCGGAGCTAAACAGGGTAGATCAAgtataaatacagaaaacaacaaacaatacatcGGATAAATTAACAGTTAGCTGTACTGATACAAAGTGAGCAGCCGTAAACAAGggatttgcttgttttattcgAGTTTTATCGTTTTAACTTTGTAGCATCCTCTTTTAAAGTTGTGTTGCTGCTGCAGAGTGAGACATGGCAGAGGAGCGCAGACAGAAGCTGTGTTCGGTGATCTTGCCCACAGAATCCATGAAGGCGATGGCGGAGTCAGTGGGAGTGGGCTCCCTGCAGGAAGACAGCTGTCTGGCCCTCAGTGAAGAGGTCAGCTACAGGATCAAAGAGATCACCCAGGACGCACTGAAGTTTATGCACCACGGTAAAAGACGCAAACTTACTACAGGCGACATTGACCACGCTCTTAAACTGAAAAACGTGGAGCCTCTGTATGGATTTCAGTCTCAAGAGTTTATCCCATTTCGCTTTGCAAGTGGAGGCGGCAGAGAATTGCACTTCTATGAAGAAAAGGAAGTGGATCTTAGTGATATCATCAACACACCCCTCCCTAGAGTCCCTCTTGATGTTTCGCTCAAAGCTCACTGGTTAAGTATCGATGGTGTCCAGCCTGCGATACCAGAGAACCCACCTCCAGTTCCTAAAGAGCAGCAAAAGACAGATTCCACAGAGCCACTCAAAGCTGTCAAACCtggacaggaagaggaaggcTCTATCCAGGCCAAGGGTCAGAGTGCAAGCTCTGCTGAAGTCAAAgGAAAAGAGAAGATGCGGATGAAACCACGTAGCACACATGAGCTCTCTGTAGAGCAGCAGCTCTACTATAAAGAAATCACAGAAGCTTGTGTGGGATCCTGTGAAGCCAAAAGAGcgGAAGCACTGCAGAGCATAGCAACAGACCCAGGGCTATACCAGATGCTGCCAAGATTCAGTACCTTCATCTCTGAGGGTgtccGCGTAAATGTCGTTCAGAATAACCTGGCTCTGCTGATATACTTAATGAGGATGGTGAAGGCTTTAATGGACAATCCAACTCTATATTTAGAGAAATATCTGCATGAGTTGATTCCAGCTGTAGTGACGTGTATTGTGAGTAAGCAGCTATGTCTGAGACCTGATGTGGACAATCACTGGGCTCTGCGAGACTTTGCTGCCCGGCTGATGGCTCAGAGCTGCAAGACTTTTAGCACAACAACCAACAACATCCAGTCACGCATCACCAAGACCTTTACTAAGGCATTGTTGGATGATAAAACTCAGTGGACAACTCGTTATGGCTGCATTGCTGGGCTTGCAGAGCTTGGGCATGATGTGATAAAGACATTGATCATCCCCCGGCTATCTGTTGAAGGTGCTCGTATTAAAGCTGTGATGGATGGACCAGTGGTGTCCAACATTGATAAGATTGGAGCTGATCATGTCCAGAGTCTATTACTGAAACACTGCGCAAGTGTGGTTGCTAAAACTAGACCACTCCCAGATGTAGTGGATCAGTACAAGGCAGATTATGGTTATCTTGGCACCATGCTTTGTTCACATGTGGTAAAGGCCCGTGCACAGGCTGCTTTCCAGGCCCAAACTGTTAACAGAACCACACTTACTATCACACAGCCTCGCCCAACCCTGTCAGTGTCTCAGAGTGGATTATCAGCATCAAGTGGTTCACGCACACCCAGCATTATTAAAGTTCCTGGTTCACTAAGCCTCATTTCCACTCGCCCTGGAACACCCACCCAGCCTTCACCCCCAGCAACCAAATATATAGTCATGGCAACAAGTGCAGGAGCTGCATCCACTCAGCAGGTAATCACTCTCAGCTCCTCCCAGTCTGGCTCTCCTGTCACAAGTACAGTGCCCAGCACCCCCACTTCTTTACAGCCACTCGTCAAAATGGAGTCCGGAAACACGGGTGCTGTGAGCGGCTCGCGCCCTCTTCAGAAATACATTGTGGTGTCTTTACCATCATCGTCTTCCTCACTGGAGAACAAGGGCTCTGGTGTCCTCCCGTCCTCTACCTCACCAATCAGCATGGAGTCAGCTGTCAAGCTGGAACGCTCGGAATCACCGGCTGCGAACACGCAGTCGCCACATTGAAACTCACATTTGCTTACACCACCAAGATACAGAAGAACAATACATGTAGCTTAAGACTTGTAATCGTGCTTACACATTACTTTCAAACAAACTGACACACGTGAATTAGCAAAGCGAGCAAATAGCTATGCACACTTTGACCGTAAGACTCACTCACAGATATTTACACTGTGTACATAGAGCATATATCCagtgtgtgtaaaaacattcGTAATCAATCATGTATacacaaatactgtatatataaaaatagttgttGTGGCTGAAAGCACAGAGAAGCTGTAACAATGACAgccatacacacatacagaatgGAAATTGATTGTgggggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgatagcaCAAGTCTTCAGGGTTTAGCTGTAGCCATGCTTCATTCATGAACGTAAGGATATGGTTGTATTTATAATTGGAAAAGGAACAATAGATGTGGAATGTGTGGGGAGAAAAAATGCGAGACAAGTGGGTTCATCACTGTCTAATCTACATTTGTATACTTAAGCACATGCTTGCTTCATGTATAAAAACTGGGCATTTATAGGGTTTAATGAACCGTTTAACTGATTTActgtttcatgtttattttggatcttctataataaagatgtttttgttttttttttaaa

Function

symbol description
taf6 Predicted to enable transcription coactivator activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF6 (TATA-box binding protein associated factor 6).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 6-like

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03131 TAF6; transcription initiation factor TFIID subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240635.1 False 2776 mRNA 0.45 15 24759478 24782648
XM_043240636.1 True 2793 mRNA 0.45 15 24759478 24782648

Neighbor

gene id symbol gene type direction distance location
sat2b sat2,sat2b,LOC107596022 coding downstream 8196 24749282 ~ 24751282 (-)
LOC122345804 LOC107730346,LOC107595984,LOC107684368 coding downstream 35569 24714443 ~ 24723909 (-)
rangrf rangrf coding downstream 69288 24685346 ~ 24690190 (-)
bspry bspry,LOC107746480,LOC107575043,LOC107730316,LOC107684387,LOC107596025 coding downstream 97878 24656827 ~ 24661600 (-)
traf2b traf2,LOC107697985,LOC107746475,LOC107567702 coding downstream 106937 24633302 ~ 24652541 (-)
LOC122346005 LOC107727699,LOC107595976,LOC107660332 coding upstream 31961 24814609 ~ 24903289 (-)
zfpl1 zfpl1 coding upstream 448587 25231235 ~ 25263128 (-)
LOC122345796 pak3,LOC107566210,LOC107712492,LOC103475835,LOC103141826,LOC108245238,LOC107093501 coding upstream 520827 25303475 ~ 25446662 (-)
LOC122345798 dcx coding upstream 688004 25470652 ~ 25523837 (-)
hip1rb hip1r,hip1rb,LOC107571022 coding upstream 835463 25618111 ~ 25651008 (-)
G39347 NA non-coding downstream 6156 24753082 ~ 24753322 (-)
G39341 NA non-coding downstream 27403 24731639 ~ 24732075 (-)
G39337 NA non-coding downstream 29087 24730212 ~ 24730391 (-)
LOC122345299 NA non-coding downstream 134600 24623559 ~ 24624878 (-)
G39298 LOC107683704,LOC107738921,LOC107600589,LOC107595993,LOC107730350 non-coding downstream 237457 24521562 ~ 24522021 (-)
G39356 NA non-coding upstream 58097 24840745 ~ 24846363 (-)
G39357 NA non-coding upstream 79295 24861943 ~ 24863191 (-)
G39365 NA non-coding upstream 129998 24912646 ~ 24912939 (-)
trnan-guu_1 NA non-coding upstream 135172 24917820 ~ 24917893 (-)
trnak-cuu_4 NA non-coding upstream 135357 24918005 ~ 24918076 (-)
LOC122345923 NA other downstream 810 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 10868 24746672 ~ 24748610 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other downstream 165362 24587724 ~ 24594116 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other downstream 482174 24265464 ~ 24277304 (-)
G39113 NA other downstream 558982 24197705 ~ 24200496 (-)
G39413 LOC102215562 other upstream 499238 25281886 ~ 25282286 (-)
LOC122344921 NA other upstream 779326 25561974 ~ 25568686 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other upstream 2317167 27099815 ~ 27107385 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 2600273 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 3103393 27886041 ~ 27895454 (-)

Expression


Co-expression Network