rnf215 (rnf215,LOC107707831,LOC107656805,LOC107741259,LOC107672611,LOC107548928,LOC107600132)


Basic Information

Item Value
gene id rnf215
gene name rnf215,LOC107707831,LOC107656805,LOC107741259,LOC107672611,LOC107548928,LOC107600132
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5008086 ~ 5013941 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240689.1
TAGACAATAAAAGACCACGatgttatttttgcatgtgcatCAAAGTGACGGTTTTAGCACGTATATCAAACAACGTGTTGAATTTTAAGGATTTTACTTCGCAAAATGCTGTATCTAGTCGTCATTTGAAAACGGGCTGTTTTTGAAGAACCTAGGTCATCTAGCTATCGttgcattttgatatttttgaattCACGATTAGGCGTATTTTATTCGAAACGgttttaaacacaaatatatgtttatagaCAAAAGGTGTTTGCCAAATTATAGACAAGGACTGACTTTGTCAATAAagatagtaaaataaattaatcgtAATGCCAATTTTCGCGCGTAACGTTACATAactattgactttttttttacagtaacacctattataattattttaagtgtaCAAGTTAAAAGCTTAATAATGATGCAGCTAAAAATGcgatttaaaactattttactgtTTCCCACTGGGTGGCGAGCgcacgtttttatttataacggCCGTGGTGGAAATATGAAATACAGACATAGAAATCGAAATATACAGGAAATGCGTGTACAAAGACAAGGATCACTAAATGGGCGGAGCTTGGTGTGCTGTAAAGAATGATTGGACCACGCAGCGCCCCCTTACGCGCTTACGCGAGTTTACCGCCGTCTGTAAGGACAGTTTCCATTCTTGCTAGTTTCACTTTCGCAAGCGCAGGCAAGGGAAAAGCGAGCCGCAGAAGAAGAGCTCCACTCAGTTTGTTTACATCAGCAGGAGGTGACAGAACAGAGGCAGCTCTGACAGTATGGCTCAAACTTTCAGTCTATGACTTGGTGTGATTTATGCCATCGACCGACCGGGAGTCATGGGCGAGTTAGCTTGTCTTTCTGTGCTGTGCTGGCTGTGGCTTTGCCCGGTGGTGTCCGGCGAACAGGTGGCTTTTGTAGAGGTGTTTCTGGAAGACCATCGGGATGTTTTGCAGGGTGAGGTGGTCCAGGGGAGTCTGGAGGACGACCCCGTGGAAAAccacaacaaaaagaaacatgaCCTCAACGGAGACCTCGTTTTAaTAAAAAATGAAGCTATTAAAACCAACAGTGAAATCAGTGATGGGAAGGATCCAAACCCCTGGATTGGAGTGGTCCCTGTCCAGATGGAGGAAGGCACAGTTTCCAGTAACAGCAACCAGGAGTCGTTTGCTGCCTCTGTGGTCAATAAGATGAAACGTGCTCTTGTTTTGGGTGCATCAGCTCTGATCATCCTGGCTTTAAACCAGAATACTGTCCGGGAGATGGATCTCTCTCAGGTCCTCTCGAAGCCAGTCATTATCATTCAGACGTCAGAAAATGTCACTAAGCTCATTGGAGCACTCCTCAGGGGCCTTCGCGCAACAGCAAAAATCACTTACAAGTCTTTTCTACAGGACAGTCTGGGGGCCACCTTGACCCTGTGGTCCAGCTGTGGCCGTTCGAGAGGAGGGTTGTACGGGGAATGGCAAGGGGTCATCTGCACCGGGGAGACCAACTCTCAGGTCCAGAAATATCTCCAGCAGCTGTGGAACACCGTCGTTCTGGTGGCCCTGGTCCTCTCCACAGGGGTCATAGTTCATGCACGCTGGCAGTATCAGGACAACCAGTTTAATGATGACTTGGAGTCAGACCCGAAGCAAGACGTTTTAAAGAGATTATCAGCACTGAAGACAAGGATATATCGGCAGCCCAAAGCGAGATGCGACCCAACACAAGCTCAGCCGGTGGAGATGGACAGCTGTGCAGTTTGTTTGGAGCAATACAACAACCACCAGTGTTTGAGGGTGTTACCTTGCCTCCATGAATTCCACAGAGACTGTGTAGATCCCTGGCTTCTCCTTCAGCAGACCTGTCCTCTCTGCAAACGTAGCGTGCTCGGTAATTTTTATTGAGCTGGACCAGGAAGGACTCCGGATTATCGATTTGTATGAATCGGATCGACTCTCTTCCGATTCAGACTTTTCACGGCAACTAAACCCCTCCACCGTACCGTAAGGTCAGAATATCTCCGTTTGACCTTTCCAAAGACTATAAACCTTGAGCTCTTTTTCAAGAGACCCCAGGACTTGTTCCTGATCTTTGCTCAAACCACTTGAGAAGTTTCTTGAAGGCAGATCCTTGCACGTGGGATCGGTTCTTTTGCGCACAGGACTAGTGTTCGTTGAACAGGCTCAACAGTTCCAAGATACACGGATTGCGAAGACATATGCACAGCGAAAAACACAAGTAATATTTTAGTTCTCTTCAAATCAAGGACGAATCATGCACCGTCAAGGGTTTGCATAAAGTTTGGATACTTggaaggggagaaaaaaaaagaaatagtcaTTAGATTATCACTTAAAACTTTTCCTTTGATACGAGACCAGGGGCCAGTTGCATAAACTTAGTCACCATCTTCAGACTGCGTCTTAGGAACTAGTTTGACCGACTAGCAGTTGCCAAAGTGGTAATGAGTCTTACTTCTCCAGTACAATTAAGACTTTTATCGtaagtgaataaaacaaattatgacCAGTCTTGAAGAAAATGGCTAACTGTTTTGCAACCTGCCAGGGCTGGTTCCTGACCTGGCTCTTTTTCGGTTGTGACCTTGACATCTTTTGAAAacgtataaaatgtttttagaccTTTAAGCAGAAACATTatgattatgtttgtttttggacaGGTTGTGCGGTAGAGCCCCGCATGACCAAAATCTTGATCAtgatcttaaaaaatatttacagactgcaagtgcatttacatgcattttagaaGTTCGTTTTTTTAGATGGCATGTAAATGCTTCATTCTAGTCAGGTTTTTCAGTGGTTGGACTAATTGACCTTTGACCTACCGTTAATAAGTTTACCGAAtcagtttaaaaagaaatgaacccTTTTAGTCAGAATATACTGAAAACTTTATaagcattataaaatgtataatatttacagaattttaaaagatttgaaaGTTAATTTCCGAAGAGCCACGGAACATTGAATACTGGAGCAACGTCTactaaaaatgcagctttgccatcacagaccTCACATGataacacttatttttaaatgtactaaaatagaaaatattattatgaaattttgAGTAAACGTTAAAATGACAACTCAGTTGTAGCTCAGCAAGAGTTGGCCCCAAAATATGTGTTCCTAATCCTTTCCATTTGTAATTAGACATTGTGTCATAAATACTTGAATGGATAGATGAAGGCTGTAGCTCGTCTATGCAAAAACCTGCTGTAGCTTCATTATATCTCCGCGTGTTAATGTACTTAATGATACAATATCGGTATATGGAGTCTCaagacagccaatcagagcatcTCGATCTGTGGTTATGCCAAATTTCCCCTCTGTCTTGAATCCACGATATCTCAGGAGGGCGCCTTGCCAGACAGGAAGACAACCATTACGTCACATTAAACACTCACACAAAGAGGAACAATGTAGAAACACGTTCttaagaacagtatttattcttgttttatcTTTCAAAGGCTCGCTTTATGTCAAAAGCTTTCTCAAATAAGCTTTCTTTTACAAAACGCTTAGAATGTTTCCTAGCGAGCAGAAATATGTTGCTCTAAATGGCAAGGTAACGTTGCCTGTTCAAAGTCTGTAGGAGGAAAAACGATGTCTCTCTCTGCTAGAATGACAAATGCTCGCAGCCTTTGGCACAAAATGACGTGTGTGTGACTCCACAACCTCCGACAGGGAGGTTTCTCAGAAACACTGCTCCGAGGTCAAGTCTTAATAGCTTTTTGAACCCTTAAAGAACTGGAAACAGGATCTTATGAGCTGCATTTTTGCTTCGATATTGTAACGTACCACATCTTTTAAGTTCCTTCtcagatttattttagatgctACATTCACAAACCTGATGTTCCTTTATTTATTGAACTTTCTTTAACAGTGCAATAACTGTTTGTATCTCTGTTCAATAAACTCTTGTGTTACAGGGCAAAAGA

Function

symbol description
rnf215 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in Golgi to vacuole transport; protein targeting to vacuole; and ubiquitin-dependent protein catabolic process. Predicted to be part of Golgi transport complex. Predicted to be active in endosome; membrane; and trans-Golgi network. Is expressed in female organism. Orthologous to human RNF215 (ring finger protein 215).

NR:

description
RING finger protein 215 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240689.1 True 3997 mRNA 0.42 10 5008086 5013941

Neighbor

gene id symbol gene type direction distance location
zdhhc8b zdhhc8b,LOC107600124,LOC107672609,LOC107707819,LOC107741283,LOC107548914 coding downstream 7030 4949084 ~ 5001056 (-)
si:dkey-112e17.1 LOC107656819,LOC107548941,LOC107741260,LOC107672633,LOC107707820,LOC107600127 coding downstream 60133 4927327 ~ 4947953 (-)
galnt9 galnt9,LOC107600134,LOC107702212,LOC107719314,LOC103023100,LOC107570788,LOC108412666 coding downstream 450242 4487841 ~ 4557844 (-)
atad1a atad1a,LOC107702218,LOC107561272,LOC107656802,LOC107719316,LOC103469725 coding downstream 545669 4456819 ~ 4462417 (-)
LOC122346182 NA coding downstream 637608 4350227 ~ 4370478 (-)
si:dkey-215k6.1 si:dkey-215k6.1,LOC107684990,LOC107741256,LOC107672621,LOC107707847,LOC107548916,LOC107600130 coding upstream 155771 5169712 ~ 5333504 (-)
aacs aacs,LOC107672615,LOC108255473,LOC107684991 coding upstream 337505 5351446 ~ 5380269 (-)
LOC122345752 bri3bp,LOC107684981,LOC107597359,LOC107672602,LOC107595913 coding upstream 369614 5383555 ~ 5388325 (-)
poli poli coding upstream 374878 5388819 ~ 5393629 (-)
ankle2 ankle2,LOC107597302,LOC107684979,LOC107672626,LOC107741250,LOC107595914,LOC107752143 coding upstream 384953 5398894 ~ 5410494 (-)
G33310 NA non-coding downstream 92335 4913881 ~ 4915751 (-)
G33300 NA non-coding downstream 105684 4859999 ~ 4902402 (-)
LOC122345411 NA non-coding downstream 956614 4050782 ~ 4051472 (-)
LOC122345413 NA non-coding downstream 1039122 3967856 ~ 3968964 (-)
G33140 htr7c,LOC107755817,LOC107707833,LOC107656814,LOC107561270,LOC107702213,LOC107560967 non-coding downstream 1103540 3898591 ~ 3904546 (-)
G33330 NA non-coding upstream 11004 5024945 ~ 5027815 (-)
G33332 NA non-coding upstream 18622 5032563 ~ 5033954 (-)
G33333 NA non-coding upstream 20170 5034111 ~ 5053903 (-)
G33334 NA non-coding upstream 61820 5075761 ~ 5076034 (-)
LOC122345808 NA non-coding upstream 128637 5142578 ~ 5169249 (-)
G33175 NA other downstream 385028 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 815005 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 1109508 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 1255322 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 2047909 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 1810230 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 1908905 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 2368405 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 2693029 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 2704624 7718565 ~ 7721758 (-)

Expression


Co-expression Network